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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010739 ID=TCONS_00010739|Name=TCONS_00010739|organism=Clytia hemisphaerica|type=transcript|length=2331bpRun BLAST on NCBI transcript from alignment at sc0000109:177818..201817- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010739 ID=TCONS_00010739|Name=TCONS_00010739|organism=Clytia hemisphaerica|type=transcript|length=24000bp|location=Sequence derived from alignment at sc0000109:177818..201817- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010739 vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4) HSP 1 Score: 333.954 bits (855), Expect = 2.121e-97 Identity = 233/723 (32.23%), Postives = 380/723 (52.56%), Query Frame = 1
Query: 262 TNSFGECHFLGATRKAKGKFIRIAHDTSMKNTFSLLTEHWMIDVPQLLISVTGGAKSFHMDPRLKQQFASGLVKVANTPGAWVITGGTNTGVMKHVGEALQG-ATK-----CLIGIATYGIVTNKDHLLESERNHFGGKFKYNVASSLVEQGAFLDHNHTHFLLVDNGTTGKFGVEIPFRSALEEYIVKEK---------------------------------VPSVLLVLEGGVGTIGTVLGSLK--SGVPAVIIKDSGRAADLLGYGLNTFTEEKIDKICSNFDHQNKALREK----IEQTFPEVNNPRKSAEEIEEGFKKAYENVALCLKERKLIRVFEMG--GSSDLDEAILTALL---DTTEPEKQLNLTLLWDRADVAENKILSQIGRRWTDDQLHYAMLMALAEDRVDFVRLFLSYGVSVPKVVDQKTLEFLYAYRSEQSTLRF----DLRSTN------ASFTEV-------------TNPLVKRF--CQENDVDLRVITMDRILMFIDELTSNIRHG---TPMLSSDVSVE-NDPYLH--------LFLWAVLNGQHQMALYLWEFGEEGLAKSLVAIEINEKLAAKAARISNLPDEVASDLNDYSAEFRTLSHDLLDKCYLDCERKTLKLITEQSEQFNKRTSINMAVSMMHLEFVSHSCVQALLNDVWTGYIKDSDITTRDFLLTMLFPPYLTTFDFRTENEMKDMIQMAE 2169
T++FG F G K ++R++ DT L+T+ W +++P+LLISV GG ++F + P+LKQ F GL+K A T GAW+ TGG NTGV++HVG+AL+ A+K C IGIA +GIV N++ L+ + Y S+ + + L+ H+HF+L DNGTTGK+G E+ R LE++I +K VP V L++EGG I VL L+ VP V+ SGRA+D+L +G + ++EE N++LR++ I++TF R A+ + + + C+K+++LI VF MG G D+D AILTALL + + P+ QL+L L W+R D+A ++I G++W L AML AL DRVDFV+L + GVS+ + + LE LY R S + D++ N S ++ N KRF N + ++L D++ +R G T +V ++ +DP ++ L +WAVL + +MAL+ W+ GEE +AK+LVA ++ + +A +A+ +++ D+++ +LN S +F L+ +LLD+ Y E+ +KL+T + + ++ T + +AV+ H +F++H+C Q LL D+W G ++ + +L +L PP + + +F+ +++M M Q E
Sbjct: 136 TDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVR-----PYQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRCLPFFSLDSRLFYSFWGSCQLDSVGIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFG-HKYSEEG--------GLINESLRDQLLVTIQKTF---TYTRTQAQHL-------FIILMECMKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPD-QLSLALAWNRVDIARSQIFI-YGQQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIP--LRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASE-NDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGILLPPSILSLEFKNKDDMPYMSQAQE 829 The following BLAST results are available for this feature:
BLAST of TCONS_00010739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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