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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010736 ID=TCONS_00010736|Name=TCONS_00010736|organism=Clytia hemisphaerica|type=transcript|length=3352bpRun BLAST on NCBI protein sequence of TCONS_00010736-protein >TCONS_00010736-protein ID=TCONS_00010736-protein|Name=TCONS_00010736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=719bp LNVRKEDATMTKRRRCKGCTAKSKMPKFGKVYRKLSEDRSAKGMDETDFSRun BLAST on NCBI transcript from alignment at sc0000109:157676..201813- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010736 ID=TCONS_00010736|Name=TCONS_00010736|organism=Clytia hemisphaerica|type=transcript|length=44138bp|location=Sequence derived from alignment at sc0000109:157676..201813- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000109:157676..201813- >TCONS_00010736 ID=TCONS_00010736|Name=TCONS_00010736|organism=Clytia hemisphaerica|type=CDS|length=30240bp|location=Sequence derived from alignment at sc0000109:157676..201813- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010736 vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4) HSP 1 Score: 318.161 bits (814), Expect = 1.765e-89 Identity = 225/684 (32.89%), Postives = 359/684 (52.49%), Query Frame = 3
Query: 258 TNSFGECHFLGATRKAKGKFIRIAHDTSMKNTFSLLTEHWMIDVPQLLISVTGGAKSFHMDPRLKQQFASGLVKVANTPGAWVITGGTNTGVMKHVGEALQG-ATK-----CLIGIATYGIVTNKDHLLESERNHFGGKFKYNVASSLVEQGAFLDHNHTHFLLVDNGTTGKFGVEIPFRSALEEYIVKEK---------------------------------VPSVLLVLEGGVGTIGTVLGSLK--SGVPAVIIKDSGRAADLLGYGLNTFTEEKIDKICSNFDHQNKALREK----IEQTFPEVNNPRKSAEEIEEGFKKAYENVALCLKERKLIRVFEMG--GSSDLDEAILTALL---DTTEPEKQLNLTLLWDRADVAENKILSQIGRRWTDDQLHYAMLMALAEDRVDFVRLFLSYGVSVPKVVDQKTLEFLYAYRSEQSTLRF----DLRSTN------ASFTEV-------------TNPLVKRF--CQENDVDLRVITMDRILMFIDELTSNIRHG---TPMLSSDVSVE-NDP--------YLHLFLWAVLNGQHQMALYLWEFGEEGLAKSLVAIEINEKLAAKAARISNLPDEVASDLNDYSAEFRTLSHDLLDKCYLDCERKTLKLITEQSEQFNKRTSINMAVSMMHLEFVSHSCVQALLNDVWTGVL 2048
T++FG F G K ++R++ DT L+T+ W +++P+LLISV GG ++F + P+LKQ F GL+K A T GAW+ TGG NTGV++HVG+AL+ A+K C IGIA +GIV N++ L+ + Y S+ + + L+ H+HF+L DNGTTGK+G E+ R LE++I +K VP V L++EGG I VL L+ VP V+ SGRA+D+L +G + ++EE N++LR++ I++TF R A+ + + + C+K+++LI VF MG G D+D AILTALL + + P+ QL+L L W+R D+A ++I G++W L AML AL DRVDFV+L + GVS+ + + LE LY R S + D++ N S ++ N KRF N + ++L D++ +R G T +V ++ +DP + L +WAVL + +MAL+ W+ GEE +AK+LVA ++ + +A +A+ +++ D+++ +LN S +F L+ +LLD+ Y E+ +KL+T + + ++ T + +AV+ H +F++H+C Q LL D+W G L
Sbjct: 136 TDAFGTIEFQGGGHSNKAMYVRVSFDTKPDLLLHLMTKEWQLELPKLLISVHGGLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGVIRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVR-----PYQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRCLPFFSLDSRLFYSFWGSCQLDSVGIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFG-HKYSEEG--------GLINESLRDQLLVTIQKTF---TYTRTQAQHL-------FIILMECMKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPD-QLSLALAWNRVDIARSQIFI-YGQQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIP--LRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASE-NDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRL 790 HSP 2 Score: 172.17 bits (435), Expect = 3.190e-43 Identity = 119/360 (33.06%), Postives = 208/360 (57.78%), Query Frame = 1
Query: 2041 VSYIAFLCIYAYVAIKEKVPGSTPSVTEYIVLAFVVSFTTEEIHQLVQTEYSTFRAKIEDYLSNYWNLVDIVAIITYFIGFALRWFSST-TNVGHLILALNAGIWILRLLHVFYMHRIMGPYVVMIYRMFIDMMYFLTILFVFMVAYGVCSTAILVP-QKASWKMFIDVIFHPYYNIYGELFIDR-DPEDSQT-TRFGTDVIN-SYAEPISWVMXXXXXX---XXXXXXXXXXXXXFGDTFSSVKDNSAQIWKYQRYGLIREYAARSALIPPFILFVH---IYLFLRWIWDXXXXXXHEEGGGVRLTTKLDEYEKEEMNEFESDSVASYVRSVRSQAND--NTTENESVQELLERVKHLT 3081
++YI +L ++ Y+ + + PS E+IV++++ + E++ +++ +E K++ +L YWN+ D++AI+ + +G LR + G +I +N W +RLL +F +++ +GPYV+MI +M IDMMYF+ I+ V ++++GV AIL P ++ SWK+ ++ + PY+ IYGE+F D+ DP Q TR +I + +W++ A+ +AN+LL+NLLIA+F +TF VK S Q+WK+QRY LI + R L PP I+F H I+ L W E G++L DE +K +++FE + Y R + +D N++ +E ++ ERV++++
Sbjct: 903 LAYIGYLMLFNYIVLVKM--ERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSDGRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKIIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHLCCRWRKHESDPDERDYGLKLFITDDELKK--VHDFEEQCIEEYFR----EKDDRFNSSNDERIRVTSERVENMS 1254 The following BLAST results are available for this feature:
BLAST of TCONS_00010736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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