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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010731 ID=TCONS_00010731|Name=TCONS_00010731|organism=Clytia hemisphaerica|type=transcript|length=2095bpRun BLAST on NCBI protein sequence of TCONS_00010731-protein >TCONS_00010731-protein ID=TCONS_00010731-protein|Name=TCONS_00010731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp MANNNKLENQNEAQNQNKAQNQDESQNQNETKNQNEAQNQNEAQNQIEDQRun BLAST on NCBI transcript from alignment at sc0000109:115972..145479- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010731 ID=TCONS_00010731|Name=TCONS_00010731|organism=Clytia hemisphaerica|type=transcript|length=29508bp|location=Sequence derived from alignment at sc0000109:115972..145479- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000109:115972..145479- >TCONS_00010731 ID=TCONS_00010731|Name=TCONS_00010731|organism=Clytia hemisphaerica|type=CDS|length=20916bp|location=Sequence derived from alignment at sc0000109:115972..145479- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00010731 vs. Swiss-Prot (Human)
Match: S22A4 (Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3) HSP 1 Score: 233.802 bits (595), Expect = 2.563e-67 Identity = 163/557 (29.26%), Postives = 268/557 (48.11%), Query Frame = 2
Query: 251 DMEEILERIGPYGRMQKTFVFIFCMLAIPSTYQTMVMIFIGNSPDWKCV-----------SNN----------------------TECNMTAIF--PKTDKQRCDMDRKS----WEYTKHKSFS-IVTEWDLICSDDYISFLVNSAMFIGWAFGAIILGWISDKYGRKITLYPSFTVCILCSFLMSFANSIWWVF-VLRVFMGFAQGGIGLTLFVMASELVGPKYR-SFAGTTVWVAFTLALCLMALQTYFVQEWRSLLQITSIPYIVLLPTYFLVPESVRWLRLNGRIEEAEQILRKVAHRNKQPWPNAKLSTPATTAEVVSAKY----LFVPTKMCISTLIQVFAWFSVSLVYYGISLASDNLGGSMYRDFVLTSVVEIPANILAMFTLNIFGRRPTTCGNWVISGVSCMGVAFIPTHGVYNWIRVAFGMLGKLCVTLAFSALFVWSVELYPTVIRSQGMGLMNVVSRIGGASAPWVAQYLGNFNKYLPFLVMGSLSLISAALCYKLNETTGMALAETLEDFNQSDSKESKTMTTIIENDFTKEDEKEQKENTSV 1783
D +E++ +G +G Q+ F+ IP+ + M ++F+ +P+ +C NN T N +A+ P D ++++S WE+++ S +VTEW+L+C D++ L S F+G G+ + G +SD++GRK L+ + V SFL F+ S W +F VL V +G Q + F++ +E++G R F+ V F + L+ L YF+++WR LL ++P ++ +P ++ +PES RWL R EAE I++K A N P + + K LF + I T++ + W S+ Y+ +SL + NL G Y + L++++EIPA I A L RR G + + +P Y ++ + MLGK +T AFS L+V++ ELYPT++R+ +G+ + SR+G AP+ YLG +N+ LP++VMGSL+++ L E+ GM L ETLE + S T D E +EN V
Sbjct: 3 DYDEVIAFLGEWGPFQRLIFFLLSASIIPNGFNGMSVVFLAGTPEHRCRVPDAANLSSAWRNNSVPLRLRDGREVPHSCSRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSFVSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSIS-WEMFTVLFVIVGMGQISNYVVAFILGTEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIPESPRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFDSVEELNPLKQQKAFILDLFRTRNIAIMTIMSLLLWMLTSVGYFALSLDAPNLHGDAYLNCFLSALIEIPAYITAWLLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVD--YYFLSIGLVMLGKFGITSAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPYFV-YLGAYNRMLPYIVMGSLTVLIGILTLFFPESLGMTLPETLEQMQKVKWFRSGKKT---------RDSMETEENPKV 546 The following BLAST results are available for this feature:
BLAST of TCONS_00010731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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