TCONS_00010725 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010725
Unique Name	TCONS_00010725
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2373

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000109:4455..7025-

transcript sequence

>TCONS_00010725 ID=TCONS_00010725|Name=TCONS_00010725|organism=Clytia hemisphaerica|type=transcript|length=2373bp
CTCTATCAGTTTGGTCTGCCGTGGCAACAGGTGTAATTGTTTCTTTAGTT
GGTAGATTATATTTCTGGAGCATGTTCATCACCATTCTTTGAATCTCATC
TTTTTGTTGAGATGGAACAGATTCTGCAATATTGGTGTTAGCTTGTGAAA
CTGCTAACTGGCTCATGATCTGCTGAACAATTTCGTTCTTCAATGTTTCT
TCATTAGGAAGGGTAGGTTGGTTCTCTTTAGCAATGGAAAGGTCTGCTTC
AGCAATAGCTTGAGAGACCAAAGAACTTGCTTGTTCCTCAACAAACGAAG
AAACGTCTACAGGCAGTGTCTCTTTAGTGAAGGTCTTTTCCATAGTTTTC
GACGTCTTTGTGGGCTCTTCTACGAGAAGAGTTTCTTTAGTGAAGTTCAT
TTCCAACGTTTTTGACGTCTTCTCCATCTTTGAGGGCTCTTCAACGACAA
AAGTTTTGTTTGTAATTGGCACCTCGTTTGCTCCAGACTNTTCCAACGTT
TTTGACGTCTTCTCCATCTTTGAGGGCTCTTCAACGACAAAAGTTTTGTT
TGTAACTGGCACCTCGTTTGCTCCAGACTGTATAAACTGGTCATCAATAT
TTTCAGCAGATCCAGGAGTCTCAAGCGATTGACTGGTGTGATTTTGGGTT
GCTTTTTGCTTAGTCTCAGTGACAACAAATGTCTCATTGGATGTGGTCTC
CTTAGTCGATAGTGGAGGAGCTTTTGGTGTGTTTTCAGTTGACACCAAGC
CATCTGAAGGAAAAACCATCATTGAACTATTAGCAATGGGTGGTTTAAAC
ACAAGAGTTTGTTCAAAGTTGGTTGAATCATCAATGCATTTTTCGTTGCC
AGCCAGAATCACATCTTGGATTGTCAACCTTCGGTCTTTGCTCAGAGTGT
ACGTTTTTCTGCGATTCTGTGGATCCTTCTTCTCATCAGCGACTTTGAAT
TGGCTTTGTGGGTTAGTATCCTTATTTTGAATTGAAGATATGGTGTCTGT
GTTGAGTATCTGAGGTGGTGATCCTCCAGGCAATGTGTTGATAGGGAGAG
GTTTGGTCAGAGACGAGAGCTTGGTCTGGACTGATGTGTTTGTATCCTCT
TTTTGTTCCATCAGCAATTTAAGAGGGTTGACTTTTAGTGTGGCAGTTGT
CGGGATACAAAGTTGTGGTGATTGACTGCTTGCCACCAGCCATTGGCTGG
AAGGTGCTATTGAGTTTTTCTTGGGAGACGTTTGGTTAAGCCTTGGAAGT
ATGGTTGACACTGAGGGTAGTTTGACCGGTTCAGCCTCATTTGATAACTT
TATCCTTTTCATGGGTACAGATGCGAAAGCGGAGGTTTCACCTAACGAAA
TTCCAGTCGACTTGGCTTCACTGACCGGTGCTGTTTCTGGTCTTTTCTTT
GAAACGCTTCGTTTTGGTGTTACCAAGATGACATTTTGTGATTGTGAAAT
TGAGTTGATGTCTTCATTAGGGGCAAGCTTATCATGTGATAAAGATGGTG
TTTCATTTGATATGGATGTGGCAGTCTCCTTGGCGTTTCTTCTGGGTGTG
ACCAAGATAGGAGTCTGAGTTGCTGGAATAGAGATTGTTTTAGTTGGTGA
ATCACCAAGTGCGATTTTAGTTATATTGCTGATGTTTGGTGATTTTCCAA
AAGTTGAACAATAGTCTCTGTAGCTGCTTACTGGAGTTGCGGAGAATCCT
TTTTGTATTTGAGCTTCCAAgctattttttgttttactgGATGGGCTGAT
AGCAGCAGACATGTTGAGTTGATTTAACATCAGTTCTCTTTGGTTCTCAT
CATCTGTAATATTCATTGAAGCTTCGCTTAATATGGTAATGTTATTAAGT
TCAAGAGCGATCGCCCCTGGAGGTGGGTCATCGCTTTCTGATGGTGTCTT
ATGACTTATGAGCTTTGCAAGAAAGTCTTTACCAGAGACTAAGGAGGATT
CCGGTGGTTTATTACTCTGAAGGTAATTGTCTTTGGTTGATTTAAAATTG
CTCAAGAAGTCAGCAGAAGAGATTTTGGTTTCTTTTTCAGCTGTGGTACG
GTCTAGAGGGAAAGTCACAAATGTTTCAGAAGCCTCGTCCATAACGTCAT
AGTTATTGAGGATAGTTTTATTGTTGTTTACATGTGGTGATTCACTGTGT
AGAGATGGCATCCCAAGAGTCGTGTCCATTCCATTTTTTGTAGTTGGCTT
GTCATcagaaaataatttaaagaaattttgaattttttgagtttCATTCA
AATCATCCCCACTGGGTGAAAGTTCTGTTAGTCTGGTTAGGTCCATGTCG
TGTTCAGCGTGAGACGTCTTATCCAAGAATTCAGTCTATGAGAAAAAACA
ATAATAAGGAGATAAAAATGAAC

Run BLAST on NCBI

transcript from alignment at sc0000109:4455..7025-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010725 ID=TCONS_00010725|Name=TCONS_00010725|organism=Clytia hemisphaerica|type=transcript|length=2571bp|location=Sequence derived from alignment at sc0000109:4455..7025- (Clytia hemisphaerica)
CTCTATCAGTTTGGTCTGCCGTGGCAACAGGTGTAATTGTTTCTTTAGTT
GGTAGATTATATTTCTGGAGCATGTTCATCACCATTCTTTGAATCTCATC
TTTTTGTTGAGATGGAACAGATTCTGCAATATTGGTGTTAGCTTGTGAAA
CTGCTAACTGGCTCATGATCTGCTGAACAATTTCGTTCTTCAATGTTTCT
TCATTAGGAAGGGTAGGTTGGTTCTCTTTAGCAATGGAAAGGTCTGCTTC
AGCAATAGCTTGAGAGACCAAAGAACTTGCTTGTTCCTCAACAAACGAAG
AAACGTCTACAGGCAGTGTCTCTTTAGTGAAGGTCTTTTCCATAGTTTTC
GACGTCTTTGTGGGCTCTTCTACGAGAAGAGTTTCTTTAGTGAAGTTCAT
TTCCAACGTTTTTGACGTCTTCTCCATCTTTGAGGGCTCTTCAACGACAA
AAGTTTTGTTTGTAATTGGCACCTCGTTTGCTCCAGACTNTTCCAACGTT
TTTGACGTCTTCTCCATCTTTGAGGGCTCTTCAACGACAAAAGTTTTGTT
TGTAACTGGCACCTCGTTTGCTCCAGACTGTATAAACTGGTCATCAATAT
TTTCAGCAGATCCAGGAGTCTCAAGCGATTGACTGGTGTGATTTTGGGTT
GCTTTTTGCTTAGTCTCAGTGACAACAAATGTCTCATTGGATGTGGTCTC
CTTAGTCGATAGTGGAGGAGCTTTTGGTGTGTTTTCAGTTGACACCAAGC
CATCTGAAGGAAAAACCATCATTGAACTATTAGCAATGGGTGGTTTAAAC
ACAAGAGTTTGTTCAAAGTTGGTTGAATCATCAATGCATTTTTCGTTGCC
AGCCAGAATCACATCTTGGATTGTCAACCTTCGGTCTTTGCTCAGAGTGT
ACGTTTTTCTGCGATTCTGTGGATCCTTCTTCTCATCAGCGACTTTGAAT
TGGCTTTGTGGGTTAGTATCCTTATTTTGAATTGAAGATATGGTGTCTGT
GTTGAGTATCTGAGGTGGTGATCCTCCAGGCAATGTGTTGATAGGGAGAG
GTTTGGTCAGAGACGAGAGCTTGGTCTGGACTGATGTGTTTGTATCCTCT
TTTTGTTCCATCAGCAATTTAAGAGGGTTGACTTTTAGTGTGGCAGTTGT
CGGGATACAAAGTTGTGGTGATTGACTGCTTGCCACCAGCCATTGGCTGG
AAGGTGCTATTGAGTTTTTCTTGGNAGGTAGATTTGATGAAAATTGTTTT
GGAGGAGACGCCATTTTGATATCATTGATTGTTGGATTTTCATCCTCTTT
TTGTTCCATCAGCAATTTAAGAGGGTTGGCTTTTGGTGTGGCAGTTGTCG
GGATACAAAGTTGTGGTGATTGACTGCTTGCCACCAGCTCTTGGCTGGAA
GGTGCTATTGAGTTTTTCTTGGGAGACGTTTGGTTAAGCCTTGGAAGTAT
GGTTGACACTGAGGGTAGTTTGACCGGTTCAGCCTCATTTGATAACTTTA
TCCTTTTCATGGGTACAGATGCGAAAGCGGAGGTTTCACCTAACGAAATT
CCAGTCGACTTGGCTTCACTGACCGGTGCTGTTTCTGGTCTTTTCTTTGA
AACGCTTCGTTTTGGTGTTACCAAGATGACATTTTGTGATTGTGAAATTG
AGTTGATGTCTTCATTAGGGGCAAGCTTATCATGTGATAAAGATGGTGTT
TCATTTGATATGGATGTGGCAGTCTCCTTGGCGTTTCTTCTGGGTGTGAC
CAAGATAGGAGTCTGAGTTGCTGGAATAGAGATTGTTTTAGTTGGTGAAT
CACCAAGTGCGATTTTAGTTATATTGCTGATGTTTGGTGATTTTCCAAAA
GTTGAACAATAGTCTCTGTAGCTGCTTACTGGAGTTGCGGAGAATCCTTT
TTGTATTTGAGCTTCCAAGCTATTTTTTGTTTTACTGGATGGGCTGATAG
CAGCAGACATGTTGAGTTGATTTAACATCAGTTCTCTTTGGTTCTCATCA
TCTGTAATATTCATTGAAGCTTCGCTTAATATGGTAATGTTATTAAGTTC
AAGAGCGATCGCCCCTGGAGGTGGGTCATCGCTTTCTGATGGTGTCTTAT
GACTTATGAGCTTTGCAAGAAAGTCTTTACCAGAGACTAAGGAGGATTCC
GGTGGTTTATTACTCTGAAGGTAATTGTCTTTGGTTGATTTAAAATTGCT
CAAGAAGTCAGCAGAAGAGATTTTGGTTTCTTTTTCAGCTGTGGTACGGT
CTAGAGGGAAAGTCACAAATGTTTCAGAAGCCTCGTCCATAACGTCATAG
TTATTGAGGATAGTTTTATTGTTGTTTACATGTGGTGATTCACTGTGTAG
AGATGGCATCCCAAGAGTCGTGTCCATTCCATTTTTTGTAGTTGGCTTGT
CATCAGAAAATAATTTAAAGAAATTTTGAATTTTTTGAGTTTCATTCAAA
TCATCCCCACTGGGTGAAAGTTCTGTTAGTCTGGTTAGGTCCATGTCGTG
TTCAGCGTGAGACGTCTTATCCAAGAATTCAGTCTATGAGAAAAAACAAT
AATAAGGAGATAAAAATGAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006012	XLOC_006012	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010725-exon-sc0000109-1575043694:5823..7025	TCONS_00010725-exon-sc0000109-1575043694:5823..7025	Clytia hemisphaerica	exon
TCONS_00010725-exon-sc0000109-1575043694:4455..5624	TCONS_00010725-exon-sc0000109-1575043694:4455..5624	Clytia hemisphaerica	exon
TCONS_00010725-exon-sc0000109-1510915933:5823..7025	TCONS_00010725-exon-sc0000109-1510915933:5823..7025	Clytia hemisphaerica	exon
TCONS_00010725-exon-sc0000109-1510915933:4455..5624	TCONS_00010725-exon-sc0000109-1510915933:4455..5624	Clytia hemisphaerica	exon
TCONS_00010725-exon-sc0000109-1491911889:5823..7025	TCONS_00010725-exon-sc0000109-1491911889:5823..7025	Clytia hemisphaerica	exon
TCONS_00010725-exon-sc0000109-1491911889:4455..5624	TCONS_00010725-exon-sc0000109-1491911889:4455..5624	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000109	supercontig	sc0000109:4455..7025 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.132446	0	9.30483	8.46612	4.45809	8.12008	2.29094	3.2275	2.37107	1.41167	0.0114439	1.31438	0	0	0	0	0	0	0	0	0	0	10.8328	12.4315	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00010725 vs. Swiss-Prot (Human)

BLAST of TCONS_00010725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00010725 (transcript) - C. hemisphaerica