TCONS_00010723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010723
Unique NameTCONS_00010723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010723 ID=TCONS_00010723|Name=TCONS_00010723|organism=Clytia hemisphaerica|type=transcript|length=1481bp
TTTAAACTTTTACTAAATTCGTGGAAATCGAAAagttctaaacaaaatgg
cggacGAAATCGAAACAACATTTGATATCGATATAAATTCAATCACTGAT
TTTGATCAAATCAAGAAGCTTCACGGTACTCTACAAAAGCAAGAGTGTTT
GCTTGATGAAGAATTAGATACAATATTGGAAAATCATCATGAAATCGACT
GCAAGATACAATCTATACAAAAGCTTTTGCCAAACCTTTCAGTGCTGACG
AAAGAAGCTAGCCATCTTTCAGATGTGATTGAAAGAACAAGTTCTTTGGC
TGAGAAAGTTAGCAGCAAAGTCCGAGAGCTTGATATTGCAAAgGGACGGG
TTCAAGAAGCCATTAAACGAGTAGATGATATTCTTGATTTGAAGtctTGT
GTGGATGGGGTACAAGATTCACTTAAAGATGAGCAGTATGAAACGGCTGC
AATTTACATCAGTCGATACTTGAGTTTGGATGAGAGAGCAATGAGGGAGA
TTCTACCAGTCGATACAGAAGaaGCGGATTTGAATGCTTCGTTCACCTAT
TTGCATCAAGCACAAGAAAAATTACAGAATGTTGTTAAACTGAAGTTTGA
TGAAGCTATCAATAGAAGGAATGAAGGACAAGTAGCTAGGTTTTTGAAGT
TGTTTCCAATGGTTGGTATCCAAGATGTTGGTCtgagtaaattttcaaaa
tatctacGAAGCCAGATAGCAGAAGCAGCTGATTTGAGAATTGACGCAGC
ACTTAAAATTCCTTCTGGAGATCGCAAATCAAACATCATCTTTGCAGAGA
CTTTGACAAAACTGTTCGAGAATATAGCAAGGATGATTGAGGATCATCAA
CCACTTGTCGATACTTACTACGGACCTGGGAAAATGCTGACAGTCCTTCG
AGAGTTGCAGGCAGAATGTGATTCTCAAGCTAAACATATCATACAAGAAT
TTTTAACTTccagaaagtttgaaaaagtgAAAGAGGACATCAATAGAAGT
TTGAAATCTGTTCCCAAATCTCAAAGAAGCACGGAAGTCAAGGAAAAGTT
CGATCCAAAAGAGTTGGACATTTTACTGGGAGAAATTGTGCTATTGAGTG
CGAGGACTGAATTATATCAGAATTTCTTGAAAAAGAGGATACagAGTGAT
CTTGAATCAATCCCAGAAGATGAAAGGCCGGAAGACATTTTGTTATCAAA
CTGTGGGTTGAGCCGTAAACTACAGACTGTGATGGGGGACTATGTTGAGA
TGGAAGGATATTTCATGAAAGAAATGCTATTAAAAGCTATTTCAATGGAT
GCGAGTGACGAAGATTCCTTGACTTCCAGCATGGTAGACGATGCTTTCTT
CATCTTGCAAAAGTCTCTCAGgaGAACTTTATCCACATCCAACCTTGATA
TCATGTGTGCAGTTTTGAATAATGCgagCTCGATAATCACGACGAACTAC
CAGTCTTATTTCAAAGGCAAAGTCAAGTCAC
Run BLAST on NCBI

transcript from alignment at sc0000109:535109..550292+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010723 ID=TCONS_00010723|Name=TCONS_00010723|organism=Clytia hemisphaerica|type=transcript|length=15184bp|location=Sequence derived from alignment at sc0000109:535109..550292+ (Clytia hemisphaerica)
TTTAAACTTTTACTAAATTCGTGGAAATCGAAAagttctaaacaaaatgg
cggacGAAATCGAAACAACATTTGATATCGATATAAATTCAATCACTGAT
TTTGATCAAATCAAGAAGCTTCACGGTACTCTACAAAAGCAAGAGGTAAG
CAAAGAATTTCATGAATTTCATCATATATCCTCAGTATTTCTTGAAAACA
TGCTCACACTTGCCAAAAGATCTTCCATATCATCAAGACGATAAAAATGT
tttccagacccgatcaattgaacttgtcgaaccaatcgatcGCACAATCA
AACTactcgaactccatcgaacgattaaagttcgattaaaaaaattaatc
gaactctaagattctttaaaagattgtgagttttcgattaagttcgatca
atgggtttcggttcgatcagttcgataaaccaattttgttcgacaagttt
gtgctgctccgccaccgtatattagcttcttttcaaagccaaattcggaa
tgtaaatcgggaaattacttccgatagcggattacacacttttcctgtat
ccttatAGCGCCAGAGGCGGGGGTTTGTTtgggcgtagtattccgccact
cagccgcgcgcgaaatcgcaacagagggggctacggactttattcaggat
agacaaatatccgggtacaataaacgtcaagctgttaaTTCCGGGAGCTG
TCGAAATGGCAACcgccaggacaaagtttttgcaagcgagggaagatata
aTTATGaagatttaatatcatcgaactaatcgaactttttactgaccgaa
ctaatcgaactgctattgcttcaaaaattgtgagtgttcgattaggttcg
attaatttttttaatcgatttttaatcgttcgatggagttcgattagttc
gattgttcgattggttcgacaagttcgattgatcgggtctggtgtTTTGT
TGAAAATTGGGTGGTTTAATCAAGTTATAGTCTGTTACCCCCCTGTGGAC
GACATGGATGGATTTTCCGTAAcaatttatcttttgaaaaacttcaggat
tTCTGTAACATTCAAGATTTTGTTATAGGAAAATCTTGGATTTTCCGATA
TATACTTGGCAAGAAAATGagcaaattttataaaaaaataaataccgtga
agtcgggtaacttgcccTAGTGGAGGCTaagatgcatagccctcaaatga
ctgaccaatcaaagcagcaaaattccaaaacaaataaactacgcagcttc
gctcgcagctctactctaccatttttgttttgatttaactttgtatttta
aagatcacagtgtttcaaccggtattccaacgaagccatattttggtttg
tacagaaattttgcccgaaattttagaccaatgaaaacgcttcatttccc
cggattaaagttgtgtctacactaacacgcgggaattagctagaaaaaga
gagaaaaaaccggggggtcaaattaaatgtttctcccttcttgcggcaaa
cataaaagactttaagaggccatttatttaagaaaggggtgttatatcat
aactaaattatgtaagtaagtgatattttaagtaacaagtgcattaacaa
tttaacaagtttgtttttaaatacaAAACCCCCAATAGatgataatttca
atttcttaacTTATtgacccatttggaagtattactacaaaaaactttca
aattttttatcggTATTTTTATTGGGCCGATAAGGGGCTGGGAGGGTCCA
ACTATATACTGATTAAAAAACAAGTATTGAGACAAAAatcttttcagcca
atttctttctgatttcgtccacaaactccactgCTGAAAGCATGcaattt
cacttgctttcacAGGGTTGCCACGTCTGCCGAAAATGTCTGGAATTTAG
CAAAAGTCTGGAAATGTCTGGAAAAAGTCTGGAAATAGCATACCTGTCTG
GAAAAAGTCTGGAAATAGAGAAACATACATACTGGGAATAATCTTTGTTA
AAGACAACCTTAGAATTTTGGtttttgcacgtttttttactTGTATATAC
TTTGTCacttatataaaaaagtctgGAAAATATTGGTGTTTTTTACCTAA
AGTCTGGAAAAATTTGgcgattttaagcaaaaatatctggaaaaaattga
ggtttttgggcaaaagtctggaattttgaaagtttcctaCCCGTGGCAAC
CCTGTTTCACCTTCGCACACAAACTCGcaactttaaaagtacagttttga
attAGCTTTGATAAGAAACTCTTTTTTTCATTGGCAAGCGCGCTGCCTTT
TCCTTTAAAATGTGGCAACTTCATtgcatcttttttcttttgtattgaTT
CACAATATCAATGGGGTtatgaacaaactcaatgttggtgcaaatagaca
aaaattcaacaatgacgGGTGGGAAGGCGAGATCAACGCGATggcgcaat
cgaacacaattgaatattttacccaggaatcagccgtaagaaataattga
aaaaaagaagaactgtaaatcttcattttgattttgaataattGGTGCAA
AAGAGTGAAACATGGAcaagtttcaatttttattggttcaattgaaatag
gggatttgggaatttttctatgtttagttttttgcacaaacccctgtaac
tatggacTAGCAActcgttgctaagatgttggcttgaaatcgaaagtgag
accactgaaaatgaaagtaaaatcagcccgcactccaaatcccgtaatcg
tgatataggagtttaagcttagactgcACATTGAAACCATTGCAAAAGTG
TTGCGCAGCACAATATCGCAAAATATTCAtacacaagaaaaaacaaacac
taaaatcgaatgtttttcttctctctgattggctgatcAAAAATAAATGA
GCTAATAAACCAAAAGGAGTTTatatcatggaattttgagCCGTGAGCGT
TTTTCAGCATTCAAAAAGAGCTGGAGGAATACAGccttaatttgaaaaaa
atagcttaacTTCTCTAAAGACTacaactagtcatagctttacTAAATGC
CACTGTTTTAATAGctttttataaattaaaatgatGATATTGTATGTAAT
CCCTTGTTTACTCTGTAAgaacaaaattatcaaaaggTATACAATTTCCT
CACAAAATGCCATCATCATACTACAGTTGTTGTCCAGCccctttttgggg
aaaatttgtcattcaagaTCTCAAGGGAGGGTTGCTGAAAAGAgtttgta
caattttttttggaatagtcAATTGGCAGATAAGCTTTAGACCCCCTCCA
CCCCTTGGCCTTATCAgccaaaatctttcaaaacaaagttttacctttga
aaatataattgtCTCTAATCATGTCTGCCATTGCAAAGGTTGGGCACATT
CCACAAGTGCTACGTGTAAACCAAATCGCgtaaatcaaaaattcaaaatg
gaggcTGACAATAACAAAAATCTTCAACTTTCAATCAGCTACTGTAGCTG
ATTTAATTTTCAACCAGCTATTGTTGTAGCTGATCCAGTCTAAGAAAtca
aagtaaacaaactttgAACCTTTTAAAGAACCCAAACAAATAAAATGGTT
TATCGGAAGTGGTGGTTACATTTCATGATGTATTTGTATTATAAAAGtct
tttcttaaataaatggtgTTTTAAAGTCTTTTGTATCTGTCGCAagaagg
aaaatattttaatttgacCCCCAGTTTTTTACTCTCTTTTACTAACTTTT
CCCGTATGTttgtgtagacacaactttaatctgGGCAAAAGAAAcgattt
cattggtctaaaattttGCATGGTCAcgtaatcaaaatttttatcaggga
aatgccgtggtcgtaatgttttgatttaatgaGACTGACCATTTTGTTGA
CCAAATGACGTTTTGATGCACAAAGTGATGAAAAAAAGTGATATGAAACG
ATAGAACATAGTCAAGGTTCAAATAATCATACCATCAACTGAAATATCAT
TTAATGGCCTTTAAAAAATCTGTTTATGTTCTTGGAGATGTGAAAATCTT
TGCAATTACATTTTCTTTGTAGTGTTTGCTTGATGAAGAATTAGATACAA
TATTGGAAAATCATCATGAAATCGACTGCAAGATACAATCTATACAAAAG
CTTTTGTAAGTTTTCTTTTGCATATTATGGAAGATCAAAATGTATCTTCT
AAATTATAAGGATGTTCCATTGTCGAATCAGACCTTTTAGTCATTGTTTT
GGACAAAGGATGTAAATTCAATTTTCCTGAAAGGCAGAAcagatttgatg
attttttgtatTATTCTCTGTCCAATGGATCAATATTGTTATACTGTTAT
AGTAAATCTTTAATACATTTTGTTATTTATAGGTTTTACAAAATCAAACA
TTGAAAAATACATTACaattttttgtgtattttaatttgtatctttttta
aatAGGCCAAACCTTTCAGTGCTGACGAAAGAAGCTAGCCATCTTTCAGA
TGTGATTGAAAGAACAAGTTCTTTGGCTGAGAAAGTTAGCAGCAAAGTCC
GAGAGCTTGATATTGCAAAggtatttttcactttattttcataTATTCCG
TAGGGAATTTCCCTTCTGTCCACTATTTCTCTCAGtttgaaccacaagtg
attttgtgGTTTAGAGATGCTGGCTAAATCGATCTAGTcagccagggtgc
agtatgcagtgctgacgagtcccaataaggacgaaatgcatatgctgctc
tgccacccaaatctcctgagtgaatatagttggacagaaattcatatttc
ttcacatatataaattgtgaagatatgtaatatctgtcattttagaaagg
aaaagtattgatatataaataactcaaactgataaaaacgaaaaaaagtt
aagaatatttttgttaattatgtatatttacaatgttttgtattcttaat
ttttaaaatcattccgaaacagagggtaatttagcaaaaagttaaaggga
atttaaataatggtatgtgaaagaaaaacctaatccaaatcaACATAAAA
GAAAAGTActagtggagaaacaatgaattgcaaaattttttttttgataa
acacacttctgtacaatcatttacacaagttcatcaaaatacatacaaaa
tggggacaaatacaaaagcaaacacatcaaatacatcaaaaaacatacaa
acacaaaacaaaacccgaagtcccagacttgtgactggcatagtgacttt
ccacgtgtttatCTTTCTTTCTCGTGATTTTGAGATATTGTTGTTATCTT
ACCTCATTATATTTTTAGGGACGGGTTCAAGAAGCCATTAAACGAGTAGA
TGATATTCTTGATTTGAAGGTAAAATTCCTTATGGCTACAGAACCTCAAA
GATCAAAGTGTGGATTCCAAAAAGCAAGGATACTGTTTAAGGGAAAAGTT
TTTTGGGGCAAAATATGACCCAATTATGGACATTTGGACTGGAATAATGG
CCTGGCATATGTTAGCTATGAGTGCCTTTggatttttatttacttttctt
attcagaaaaatatttttctaataataaaaactttttttagtctTGTGTG
GATGGGGTACAAGATTCACTTAAAGATGAGCAGTATGAAACGGTAGGTTT
TTATCGCCGCTtccactttttttatataagaacaattttataagaacaat
gaggctcaaaattgccgaaaataaatatataaataagaacaggataagaa
caatttgaggctcaaagtgccaaaaaaataagaacagccgagcctcagaa
aaatttactggttcttataaaaaaagtgtatctcTGTTGAAAACCAGATT
CAATTTTGTAGTAGGAACACCATACAGAATGTTGATAGTAAAAGGAGATC
CATCATTCTTAATGATCACGATAATATTTTGAAGTTGACATTTTTGTTCA
GGCTGCAATTTACATCAGTCGATACTTGAGTTTGGATGAGAGAGCAATGA
GGGAGATTCTACCAGTCGATACAGAAGGTAATTTTAATCACCATACTATA
TCATTTGGATTGTGTTGAGTTGTACTAAATTTTATCGGCTGTCTTTTATT
TTCACAATCTTATCACCTTTTAAAGtgtttattttgtatattttacCCAC
TCTATCAtcatagttcttataaaaaggccTGGTCTGGAAGGTTAGAGTTC
AGTACACAAGTAGGTTTGTTTTGCATATAGTTTTTGATTATGTGACTaga
aaataaaccaatcccaagagtcAAAAATGGtaatgtgatcaaaaagtatg
caaatcgcaacttgcctTTTATTTACAGCTAAAGAAATTTGACAataagc
taaaacaatacaataCTAGACCATGCTAATGACTATGCTACGTATTATAA
TCCATCTTTGGATAACATAAGTCACCCTAACACAAAACAGACTCTctgaa
aagtgtttttatagTCTCCAAATTTGATGAACTTTGGTATCAACaatttg
tttcaataaaaattattttttacagaaGCGGATTTGAATGCTTCGTTCAC
CTATTTGCATCAAGCACAAGAAAAATTACAGAATGTTGTTAAACTGAAGT
TTGATGAAGCTATCAATAGAAGGAATGAAGGACAAGTAGCTAGGTGAGAA
AAtgcatttgaaataaaaagatttttagtACAAAGGAACCatgcgaaaaa
ggccaaaatttgtcaaaatgaaaaaaaatattaatccactttttaattta
atcccCTTTAAGTTTCATTTTGGTTTATTCTATGGATGATTTCATCCATT
GTAATTAGTTATACcggtatatttttttttatttattatttataatATTG
TGATTTGATATTTTACATTTTGGTGTGTTTTAGGTTTTTGAAGTTGTTTC
CAATGGTTGGTATCCAAGATGTTGGTCtgagtaaattttcaaaatatcta
cGAAGCCAGGTACAAACACAATGAAAATCCTTCAATTCGTTTTATAACAA
AagtttattgtttttaaaaattgaaaagctTCCCTACAAAGAAACCCCAG
GCACCCTGCTTAAATTATTCTAGCTATACTCACAAAATTACCGACCAACG
AAAATTTCCTTCTTTGCAGCACAAGAAGATTGATCTTCAGTCTCTCATAT
TTACAACAATAATTTACCTGGTATCTTCCTGTCCTTTTCATTATTAGATA
GCAGAAGCAGCTGATTTGAGAATTGACGCAGCACTTAAAATTCCTTCTGG
AGGTATTAATTTCTTACGGCAAAACCAATTTAATTAGTTGTTTTACAGGC
Ccaaccgaccctgaaattccaagaagcgaaataaaaatgaaaatgatttt
agtattaaatttttattccattggcattgctttacagactgcccaatttt
caaattttcgtcagtttttccaaagttttgaaaattttaagttaaacttt
ttatttatccatgaatttgagctttttgtgtcttttcattttctatttcg
catttttgtcaggatgtagtagtttttgctgcctttttaagggagtttat
aggtgaaattctactaTATTTTTTACAGTTTGAATCAGGAAAATGCGTTT
TAAAGTGAATCTTTTAGATTGTTGCTTTCCTTCCCTCCTTCATAGATCGC
AAATCAAACATCATCTTTGCAGAGACTTTGACAAAACTGTTCGAGAATAT
AGCAAGGATGATTGAGGATCATCAACCACTTGTCGATACTTACTACGGTT
ATTCATCTGagttcaattttgaaaaaagtatccATAAGTggggctggact
taaaaaaattcttggtTTGTCGTCACCCATCCCTAGATCACGTTTTTTTT
ACGAAGTTTGGCCGTTTTTTTGCAGAAATTAGTCCTcgggaaaaatttga
aatcccaaaaatggccaaacccctaggaaaatgaaagaaatccaGTAGAA
AAGAGGATGATTCGCTAAATTTTATCCAAATTTTAGATtcttgattttcc
aaaaaaagttaaaagttggCTAGAATGTAACAGGTTGTAACCGGTACAGC
AAATGACTGgctttcatcttttttttaGTTATGTGgcaactaattttttt
taatcttttggtCTTTTTCCATATTTAGGACCTGGGAAAATGCTGACAGT
CCTTCGAGAGTTGCAGGTTACTATTGTCTTTTTTTATAGACATTTAAAGG
GTTTAGTTTCACATACacttttgttataagaacatacaaatttttgaagc
cttcggatgttcttaacgttCTGAGTTTTATGGcaaaatatgttcttatt
tttaccattttgtgagtatttttgtccatattcctaagaaattgggtgtt
ttaagtCGGCAAAGCCATGAAATGTTCTTTAATAGTTCTTagtattttag
ccatcgaagccttatgtttttattatagtttgttcttataaaaaaacgtg
taagtgttcctgtttcatatcagacacatatcaGATATCAGGTCATATAT
GTTTGTTATAggagataataaaaaaaaagtttttctattcCTCTTTGCAA
CCAATCTTGCTCCGTTCAGCCTGTTTTGTTGTTACTTTTTATTCAATCCC
TTCCTTGAAATCATACacaggttttttataagaatacaaaaatccaaaaa
ctgaTTTGGAGATACTTAGGGGCAAATTGTTTCGCTTAcacttttgccac
ttttgccctTGTTCCCACTTCTGCCACCATcatgttgaaacatttttaaa
aagtgtgatAAGTGGCTCCTTCAGCTAACTTGTGTCAGGCAATGTGTAAA
AACGAGACCACGTTCCTTCAAATACGGGCCAGAAACAGTGGTCCTTCTAG
GTAAAATTCCGACGGCAACAGAGCCTTATTCCAGGTCTTTATATTACATT
TTCAATCGGTACAACATAAATTATGCCTTCTGCCATCTTTGAATAAATTT
ATTCTCTAGTTACATAGCGACGGAAAATTAATGCAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACAATTT
GGAACCTGGTGGCACTTGGGGCAAAGATGTGAAAAATAGCAGCGAAACAA
TTTGCCCCTTACACCAAAACAAtgacaaggctgaaaaatgcttgaagaaT
GTTTATATCCTAAGCAAAACTTTAGAGAAATTCCGAAAATTCATTAAATC
TCAGTCAAAACAGCTTAAATCGGGGAATGTAGGCTCATGTTATGTAATAC
ATgtaatgcttagcatatgcttaaatttttaccatatctgagcctagata
ttcttataaaaaagatatatcttccTTTGATTGATACTTTGTAAAACTTC
TATTTTAGGCAGAATGTGATTCTCAAGCTAAACATATCATACAAGAATTT
TTAACTTccagaaagtttgaaaaagtggTAAGACCTCTCccccaaatttt
gaaattctttctcCATCAATATCACAAAAAGTAAGAACGTTTAGTACTGT
ATGTTACGAATTTGATATagttaattgtaatttttacaaaaacgaTCTGA
ACTTTAACTAAGGCTTTTccttttacaaagacaaactGAATTAAGGCTTT
TCCTTTTACAAAAAAGACCTGAACTAAGGCTTTTCTTCTTACAAAAACGA
CCTGAactaagattttttcttttaaaaagactAGCTGAACtaagactttt
tcctaaatttgtTGTAAATAATTGACCTGGTCTACTCCCTATTGTGTTTA
GAAAGAGGACATCAATAGAAGTTTGAAATCTGTTCCCAAATCTCAAAGAA
GCACGGAAGTCAAGGAAAAGTAAGTCTTATCATCAATTTGTATTGAGATG
TCTTTGATTTTGTGTAATCTTTTAGAAATTGGTTTGCTATTAGTATTgtc
ttaaaaaatatatataaatatgaaatattatttGAGACACTATTGATACA
GCTTGTCACATCCAATTTCAAAGATGTTAACAAACGTATGAGAGGATATT
ATGTGCTACATTGTAGCAAATTTGCGTGAACATATAAAAGGACTTATTTG
ATTGTGATAATACATGCAAATTGAATGATTGAATCGAAAGTAATTAACCC
TTTGATAATCTGTAATTGGGGCAATCTAGGAAGAAAGAGcggtgccctcc
cctaccttggggtagatagctatcgaaagagtaGCCTCGGGTCGCCTCTT
ACTGCGGTTGCAAACTTACGAGGGGTCTCTAGTTTGTTTATTGGAATTCA
TTCTTGTAATCTGCTTATccttttcattgtttttcagGTTCGATCCAAAA
GAGTTGGACATTTTACTGGGAGAAATTGTGCTATTGAGTGCGAGGACTGA
ATTATATCAGAATTTCTTGAAAAAGAGGATACaggtaattagttcttaaa
aagtaaacaagggatggagCACAATatgagtatatttatttttcttataa
gcatatcatttataagaataaaatcaataactTGGTTTGAAGCGAGCGAA
ATTTCGATTGAAGTCCTGGTTACATGTTCAACTGAAATATATGTACAATA
ATAAACTGAAGCTGTTTGATTTCATTGCAATGATTTGATGTAAAACGTAA
TCATGATAAATAAAATGAAGATTTGGAAAGTTCCAAGAAGATTTCTTCTT
GGAATGACTCAATTTTGGGTTTGAGGCCGTTGCATGTatagcatccagct
acggtgcacaAGGTCATGGGTTCAATCTCTGTCATTCCAATGGTACTAAG
GAAAGGGTCAAGGGTAAgtagagcaatccagggagaaataGTGGCACCTT
CCCCTACCTTTAGGTAGATAACTAtgtatcgaaagaggagccttccaCTC
CTCTCTGACTCTGATCGTAGACTCTACTTACATAGGTTTGTCAGAATTCA
ATTTACATTCTCTAACTTTTTCAGAGTGATCTTGAATCAATCCCAGAAGA
TGAAAGGCCGGAAGGTAAAAACAATAGTGTTTGCGTTTCCATCGAATTTT
TGAaccgcaatggactgtgtttGAATCCCGATCCCTTTCAGGCAGCGTGT
TAGGGTAGCATTATGATATccatccagggggtctttattTTTGGATAGGC
CATAGTGGTGACTTAGTAATGATAAACTTCCACTTTGATCCTGAATACGA
TCCAAAATATTCCCAACAAATCCAATTCATCAAAAAAGGATGAATCAaga
ttattcatgatatgcaccaatgtcttccacgaacccaacagctgatttgt
tgaaagtgacatattgactgattttatgtcacttacaaccaatcagctgt
tgggaccgtgatgtaatgtcagaagatatTGCAATGGCGCATATAATGAA
taaaaggccggtctccacttgtgcgcgctccgatcgcactttttcgaaca
atacttccacgctattggtcaaaagaaaaatgaagtaattccattggcgc
gatctgacggttgaaaaaagttgaaatgtgctcAACTTTTCTTTCgagcg
cgctacatttttattacataatcttttttccaaccaAAAAGGATTGAAAC
CAAAAAGTGCGATAACAGCGCGCGTCAGTGGAGACCGgcttttattcatg
atatgcaccattgcaatgtcttccatgaacccaacagctgattggttgaa
agtgacgtattgactgattttacgtcacttacaaccaataagctgttggg
tccgtggaaaacattgcaatggcgcatatcatgaataagcgaacgaattt
ttttattcatcacAGCTGATCCGGATAAACTGAAAGACATTTTGTTATCA
AACTGTGGGTTGAGCCGTAAACTACAGACTGTGATGGGGGACTATGTTGA
GATGGAAGGATATTTCATGAAAGAAATGCTATTAAAAGTAGGTGTAAATT
CAATTTGCAATGCCCTGTTTGGCTTGGTAAAATACATTTCTTAAGGTTGA
TCTCTGCATGGCTATAAAAAtagatttgaatttgaattcgAATTGaaaat
accgtattactttgaataaacgcccggggcgtttattaaatttttaagat
tttaggagGGCGTTTATTCGATATAATATTAGGTAAATAATAATACTTAT
ATTCATATTTTATTTCCTTGTGTAAAAACATgaagtatgttttaaaaaaa
tgatagtAGTTTTTCAAGATTCTTTAGATTACTCtgatattcgaatattt
ctctaattcgaagaaaattttgggtcccttgaagatcgaattagagagcg
agATAGTCAACTGTACTCTTGTCTGAGAGGTATTTTTAGTGCATTGATGT
ATGCTaataaagtgaagaaaaaaatttctcatcatcattttcaaattttt
aaaagattcacCAAATCTTACGTCAATGCACTTAAAATTGTTTTTCCAAC
GGGGTATTACTTTACTTTTCCTCCCTCAAGAACAATgcttaaaaataacg
gactgtcAGTTTTTTCGGAACAGGCTTAATTCATATTTTGTCGTGAACTA
GTGAATCTAAAAATTCAACCCACcaacataaaaatcaaattatctGACTT
GCCTTTGGCAATACCTTGATTTTGTACACAGGCTATTTCAATGGATGCGA
GTGACGAAGATTCCTTGACTTCCAGCATGGTAGACGATGCTTTCTTCATC
TTGCAAAAGTCTCTCAGGTATTGTTTATCGATTGAACTGCCGAATCGACT
GGAGAGAGTCCATTATCATTTGAAGATTCTCTACTTTATAATCTCTCTAG
GGATGGAACCATAGTAACCTCGTATAATAAATGCAATTGGAAAGGAAGGA
AGGGAAATGCAATtttcttattcatgatatgcaccatttcTTACACCAGA
GTCTTATGAGAacttccacccaatacgtcactttttctattgtttaagtg
acgtattgggtggaaaatttttaaagttctctgaagactctccagtggtg
catatcatgaataagcaATGAAAAGCGTTATTGTGTNagttctcagaaga
ctctccggtggtgcatatcatggataGGAGATGAAAAGCGTTATTGTGTA
TTTTATAGACCATTGCTAGAAGAGATCGTAATCCATTGGAGTAAAATTAT
ATCAtgtctaattttctttttccaggaGAACTTTATCCACATCCAACCTT
GATATCATGTGTGCAGTTTTGAATAATGCgaggtaacttttattttgtac
TCTTTCTTTCTCTTTTAAATTCTATTTCAAGGATTTTCTTCGAAGTTTAT
GCCCTTTTCTAACTGAAGGGAGTGACGTTCCAGCTTGAATTACAAAAAAT
AAgcaagtatattcatctggtggctgtctgTCGATGTGAGAGGGTCTATC
CTCTCTTCTTTTTGCGCTAGATTTGGGaggtcgaatgctgaggtggagcc
ccacgcctactctcagctcccacaCCTAGATTGAATCAAATCTAGGCTAC
TCATTCGCCGAATTGTCGGTGACCGAGGATCGAATCCACAACCCTTGGAC
CATGTTCAGGAATTACGGTTTCGTATCGTTCCGGCATGGTTTcgagtgtt
catattggttttaAAACGTTTCGGAACAAGAAatcggagcagttccgttc
cgatgaaaatagtagcgagattatgtatcggagatattctacgactacgg
ttgcggggctgcctgTACGGGTCGTCAACAAAGGCGatatgtcgttgtct
actttgctctgtacgggaaaaacaccaaaacaccgtataagcaaagtcga
cataatgccgtacgtcaaatatcgaacttgctttcacNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCTCGCCActttagcc
gtagccgtagagaattccagatacataatctcgctagtGTGAGCGAAAcg
gtttcgatctgttttgctttgggacgtcttctttttgacgtttcgaattt
tgacgttaaCACTTGATTCGGAACCGTTTTGTTTCGGAACGATACGGCCC
CTTAACGTATGAATATGTCTTAGTTTGTAATGCCAAttctctaccgactg
agctacctgGCATgaagattcaaataaaatagGATGGAATCGGATGCACT
TGGTGTTTGTTCAATTAGTGAGTGATGAATGATTAGGTTTTCATATAAGC
TCCCCAATCATTTCCGTATCAAGCATCCAATACTTGAGGGTCATGAGAAA
ATTGAAACTTCCTATAATggacagttgactctcgctaattcgaactcgat
cgaactcgaacgggtgatcttatttgttcaaattatagatagattcaaat
tacagaaagtattttaagagggtttttCATTGACGGGGACTTATATTAAT
TATTCGTAAATTAGAAGTTAGTAATAAGCGAGAGTTTACTATACCCGCTC
GCCAGTTTTACCTTTGCCTTTTCTACTCCAGCTCGATAATCACGACGAAC
TACCAGTCTTATTTCAAAGGCAAAGTCAAGTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006011XLOC_006011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010723-exon-sc0000109-1491911889:535109..535253TCONS_00010723-exon-sc0000109-1491911889:535109..535253Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:535109..535253TCONS_00010723-exon-sc0000109-1510915933:535109..535253Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:535109..535253TCONS_00010723-exon-sc0000109-1575043694:535109..535253Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:539181..539263TCONS_00010723-exon-sc0000109-1491911889:539181..539263Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:539181..539263TCONS_00010723-exon-sc0000109-1510915933:539181..539263Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:539181..539263TCONS_00010723-exon-sc0000109-1575043694:539181..539263Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:539564..539678TCONS_00010723-exon-sc0000109-1491911889:539564..539678Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:539564..539678TCONS_00010723-exon-sc0000109-1510915933:539564..539678Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:539564..539678TCONS_00010723-exon-sc0000109-1575043694:539564..539678Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:540427..540477TCONS_00010723-exon-sc0000109-1491911889:540427..540477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:540427..540477TCONS_00010723-exon-sc0000109-1510915933:540427..540477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:540427..540477TCONS_00010723-exon-sc0000109-1575043694:540427..540477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:540700..540750TCONS_00010723-exon-sc0000109-1491911889:540700..540750Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:540700..540750TCONS_00010723-exon-sc0000109-1510915933:540700..540750Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:540700..540750TCONS_00010723-exon-sc0000109-1575043694:540700..540750Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:541060..541135TCONS_00010723-exon-sc0000109-1491911889:541060..541135Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:541060..541135TCONS_00010723-exon-sc0000109-1510915933:541060..541135Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:541060..541135TCONS_00010723-exon-sc0000109-1575043694:541060..541135Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:541634..541751TCONS_00010723-exon-sc0000109-1491911889:541634..541751Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:541634..541751TCONS_00010723-exon-sc0000109-1510915933:541634..541751Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:541634..541751TCONS_00010723-exon-sc0000109-1575043694:541634..541751Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:541992..542067TCONS_00010723-exon-sc0000109-1491911889:541992..542067Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:541992..542067TCONS_00010723-exon-sc0000109-1510915933:541992..542067Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:541992..542067TCONS_00010723-exon-sc0000109-1575043694:541992..542067Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:542306..542360TCONS_00010723-exon-sc0000109-1491911889:542306..542360Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:542306..542360TCONS_00010723-exon-sc0000109-1510915933:542306..542360Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:542306..542360TCONS_00010723-exon-sc0000109-1575043694:542306..542360Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:542754..542855TCONS_00010723-exon-sc0000109-1491911889:542754..542855Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:542754..542855TCONS_00010723-exon-sc0000109-1510915933:542754..542855Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:542754..542855TCONS_00010723-exon-sc0000109-1575043694:542754..542855Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:543237..543274TCONS_00010723-exon-sc0000109-1491911889:543237..543274Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:543237..543274TCONS_00010723-exon-sc0000109-1510915933:543237..543274Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:543237..543274TCONS_00010723-exon-sc0000109-1575043694:543237..543274Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:545017..545085TCONS_00010723-exon-sc0000109-1491911889:545017..545085Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:545017..545085TCONS_00010723-exon-sc0000109-1510915933:545017..545085Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:545017..545085TCONS_00010723-exon-sc0000109-1575043694:545017..545085Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:545410..545477TCONS_00010723-exon-sc0000109-1491911889:545410..545477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:545410..545477TCONS_00010723-exon-sc0000109-1510915933:545410..545477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:545410..545477TCONS_00010723-exon-sc0000109-1575043694:545410..545477Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:545946..546042TCONS_00010723-exon-sc0000109-1491911889:545946..546042Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:545946..546042TCONS_00010723-exon-sc0000109-1510915933:545946..546042Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:545946..546042TCONS_00010723-exon-sc0000109-1575043694:545946..546042Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:546583..546622TCONS_00010723-exon-sc0000109-1491911889:546583..546622Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:546583..546622TCONS_00010723-exon-sc0000109-1510915933:546583..546622Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:546583..546622TCONS_00010723-exon-sc0000109-1575043694:546583..546622Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:547445..547545TCONS_00010723-exon-sc0000109-1491911889:547445..547545Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:547445..547545TCONS_00010723-exon-sc0000109-1510915933:547445..547545Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:547445..547545TCONS_00010723-exon-sc0000109-1575043694:547445..547545Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:548240..548325TCONS_00010723-exon-sc0000109-1491911889:548240..548325Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:548240..548325TCONS_00010723-exon-sc0000109-1510915933:548240..548325Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:548240..548325TCONS_00010723-exon-sc0000109-1575043694:548240..548325Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:548784..548840TCONS_00010723-exon-sc0000109-1491911889:548784..548840Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:548784..548840TCONS_00010723-exon-sc0000109-1510915933:548784..548840Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:548784..548840TCONS_00010723-exon-sc0000109-1575043694:548784..548840Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1491911889:550240..550292TCONS_00010723-exon-sc0000109-1491911889:550240..550292Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1510915933:550240..550292TCONS_00010723-exon-sc0000109-1510915933:550240..550292Clytia hemisphaericaexon
TCONS_00010723-exon-sc0000109-1575043694:550240..550292TCONS_00010723-exon-sc0000109-1575043694:550240..550292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:535109..550292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.00114	0	2.01304	1.54077	1.51605	0.504125	2.45149	2.02046	1.31459	0	1.95088	2.52872	1.65479	1.30853	0.421888	1.9361	2.7457	2.10951	0	0.782605	0	0.783917	1.18064	0.351887	0.997524	1.77336
Blast
[Close]
BLAST of TCONS_00010723 vs. Swiss-Prot (Human)
Match: COG4 (Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens GN=COG4 PE=1 SV=3)

HSP 1 Score: 363.614 bits (932), Expect = 5.024e-116
Identity = 190/474 (40.08%), Postives = 310/474 (65.40%), Query Frame = 2 
Query:   83 INSITDFDQIKKLHGTLQKQECLLDEELDTILENHHEIDCKIQSIQKLLPNLSVLTKEASHLSDVIERTSSLAEKVSSKVRELDIAKGRVQEAIKRVDDILDLKSCVDGVQDSLKDEQYETAAIYISRYLSLDERAMREILPVDTEEADLNASFTYLHQAQEKLQNVVKLKFDEAINRRNEGQVARFLKLFPMVGIQDVGLSKFSKYLRSQIAEAADLRIDAALKIPSGDRKSNIIFAETLTKLFENIARMIEDHQPLVDTYYGPGKMLTVLRELQAECDSQAKHIIQEFLTSRKFEKVKEDINRSLKSVPKSQRSTEVKEKFDPKELDILLGEIVLLSARTELYQNFLKKRIQSDLE---SIPEDERPE------DILLSNCGLSRKLQTVMGDYVEMEGYFMKEMLLKAISMDASDEDSLTSSMVDDAFFILQKSLRRTLSTSNLDIMCAVLNNASSIITTNYQSYFKGKVK 1477
            I S+T+  +++ ++  L  +E +++ ELD +LE  + I+ K+ ++ ++ PNL ++  +A  L+ +I  T +LAE VSSKVR+LD+AK R+ +AI+R DDILDLK C+DGVQ +L+ E YE AA +  RYL LD +++ E+     E + ++A+   L +A+++L+ +V  KF  A    +  QV RF K+FP++G+ + GL KFS+YL  Q+A  A+  +   L     DR++ +IFA+TLT LFE IAR++E HQP+V+TYYGPG++ T+++ LQ ECD Q + ++ +F+  R       D ++  + V  +       EK +P+ELD +L E+ L++AR+ELY  FLKKRI SD E   S+  +E  +      D LL+NC LS  +Q ++G YV ME YFM+E + KA+++D  ++  LTSSMVDD F+I++K + R LS+S++D +CA++N A++ + ++++     K++
Sbjct:   33 IRSLTELQELEAVYERLCGEEKVVERELDALLEQQNTIESKMVTLHRMGPNLQLIEGDAKQLAGMITFTCNLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCMDGVQTALRSEDYEQAAAHTHRYLCLD-KSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIVAEKFAIATKEGDLPQVERFFKIFPLLGLHEEGLRKFSEYLCKQVASKAEENLLMVLGTDMSDRRAAVIFADTLTLLFEGIARIVETHQPIVETYYGPGRLYTLIKYLQVECDRQVEKVVDKFIKQR-------DYHQQFRHVQNNLMRNSTTEKIEPRELDPILTEVTLMNARSELYLRFLKKRISSDFEVGDSMASEEVKQEHQKCLDKLLNNCLLSCTMQELIGLYVTMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSSSSIDCLCAMINLATTELESDFRDVLCNKLR 498
The following BLAST results are available for this feature:
BLAST of TCONS_00010723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COG45.024e-11640.08Conserved oligomeric Golgi complex subunit 4 OS=Ho... [more]
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