TCONS_00010719 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010719
Unique NameTCONS_00010719
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length941

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010719 ID=TCONS_00010719|Name=TCONS_00010719|organism=Clytia hemisphaerica|type=transcript|length=941bp
AAACTTAAAGTCATGGTCCATTCAACGTTTTCAGAGGAAAGTTTGAGTCT
GGATAACTCCAGACAACTCATGATAGCTCAAGTAAATTTGTTTAGCAAAT
GGTGAGGTGGGAAAATAATATCATCCTCCAGGATGCAATTCCAACTTTCC
ATACTTGAGTGAACCTCATAAGCTTCCAGCTATCAGAAATAGCATTATTA
ATTTATAAATAGTGCACTCGAGTTTTTATATTTTCCCTTCTACAGTACCA
GTAAGACCACTAACGACATATTTGACAGCACACCGCCTGGTTACAGGTGC
TCTTGGTGTTCGAGCAGAAATTCCTCCAAAAGAAATCtctaaagagatgg
aaaaattGGCTGATGCTAAAGCGCATTCCATTATACTTGACGCTTTGAGA
GGAGCAGGTGAGATGGGTTTGACTCTGGATACACTAGCAAGTATCATTGG
TGCTGTAAATCAAGAGAAGCTTGTCATTAAACGTCTCTACGATCTTCAAA
ACAGAGGGAAAGTTCTGAGCCTCCCAAATAACGCATGGAAAATTAAACTT
GCCTCAGATGGTTCAACCACAAAACCACCCATCATTACACCAGAAAAACC
ACTTCTCAACTTACCCGGTAATCCAAAATTCTCATCCTACAAGAACGCCT
TACAAGAATACTGTCAAAAGCGTAAAGCCCCAGTTCCAAAGTACAATTCT
ACAAAGTCGTCCACAGGCTTTATTGGTAATGTCTCTTTCCTCGATTTCAA
CTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTAGNC
GAAAAATGTGCAAATTCTAAACAAATAAAGCGCTAGATCCAATCCTTTAT
TCTAAACgcagtactcttaggtgccaaataaacgccccccccgcttgtta
atttttagatttttttccaacccccccggaccttattagga
Run BLAST on NCBI

protein sequence of TCONS_00010719-protein

>TCONS_00010719-protein ID=TCONS_00010719-protein|Name=TCONS_00010719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MEKLADAKAHSIILDALRGAGEMGLTLDTLASIIGAVNQEKLVIKRLYDL
QNRGKVLSLPNNAWKIKLASDGSTTKPPIITPEKPLLNLPGNPKFSSYKN
ALQEYCQKRKAPVPKYNSTKSSTGFIGNVSFLDFNFTAEAATDTPKDADL
XRKMCKF
Run BLAST on NCBI

transcript from alignment at sc0000109:513898..516808+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010719 ID=TCONS_00010719|Name=TCONS_00010719|organism=Clytia hemisphaerica|type=transcript|length=2911bp|location=Sequence derived from alignment at sc0000109:513898..516808+ (Clytia hemisphaerica)
AAACTTAAAGTCATGGTCCATTCAACGTTTTCAGAGGAAAGTTTGAGTCT
GGATAACTCCAGACAACTCATGATAGCTCAAGTAAATTTGTTTAGCAAAT
GGTGAGGTGGGAAAATAATATCATCCTCCAGGATGCAATTCCAACTTTCC
ATACTTGAGTGAACCTCATAAGCTTCCAGCTATCAGAAATAGCATTATTA
ATTTATAAATAGTGCACTCGAGTTTTTATATTTTCCCTTCTACAGTACCA
GTAAGACCACTAACGACATATTTGACAGCACACCGCCTGGTTACAGGTGC
TCTTGGTGTTCGAGCAGAAATTCCTCCAAAAGAAATCtctaaagagatgg
aaaaattGGCTGATGCTAAAGGTACAATTTCCAACAATTCATTAAAGAAC
CATTTCTCAACACCGTTTTGGTTTTCGTTTGCCTAGATATCCATACTAAG
TGTGATACAGTTTTAGTGTAGCAATTTGGATAAGCGAGACATGAAAACTG
TCGGTAATTGATCCAAAAAGGCAAATGAAATCTCTTCTGGGTTGAGGAAT
GGTTCTTACTACATGGTTAATTATATTTGACTTCTTTTCTCTTCCAGCGC
ATTCCATTATACTTGACGCTTTGAGAGGAGCAGGTGAGATGGGTTTGACT
CTGGATACACTAGCAAGTATCATTGGTGCTGTAAATCAAGAGAAGCTTGT
CATTAAACGTCTCTACGATCTTCAAAACAGAGGGAAAGTTCTGAGCCTCC
CAAATAACGCATGGAAAATTAAACTTGCCTCAGGTATGTTATGTAGTGTT
TCAGAGTGTTTTCTTATCATAAATAAACAGTTTTCACATTTCTAGGGCAT
ATTTTTCACAGTTCTTGCTCACATATTTAttattgttttatattttttac
ttattGACTGGGTATCTTTTTGATGTAGTGTCTCTTGACTTGTTCTATCC
TCGAGTTTAATGCGAAGGAATTTATAAATATATTATGACCTCATATACCT
ATTATCTAAATTCCATATATCAATTTCTGAACCTTTTCGTTTAACAGATG
GTTCAACCACAAAACCACCCATCATTACACCAGGTATGATCATTTTGTTA
TGTCCCAATGAATCATGAATGGTTAAACAATTTTCTTCTCTCAAATGATT
TCCaaataagatcacaaaaatatcattttgataCAACGAAAACtgcagaa
aaaaactttttttctgtaaagatGATTTTTCCATAGAAATAAGTTTTGAT
GTGACTCACCAAAACCATTTACTGATAAGTATGATACATTTTCAAGCAGA
GTTATTTCTTCACCTCGTTGCTTAGCCTGGCTTAACGTATAAATGAGTTT
CTATGACAATCTATTCACAAGGGATCGATATAACCGATTCCTTTAAGATT
TGGTGTGTTCGGGTTTAACCATTCATCTTCCTTGTGACCTTTATAAAATG
ATCATGTTgttacaaaacaataaaattcatGATCAAATGTTTTTCGTGTT
CCTATATATGTTTCGATGaggtttgtattttattatGATTGTTGATCTGG
GGTATTaagcaaaatgggtgccgggtatgtgcgagccataagggtccctg
gTCCTGTTGGATTAAGCGCTTTTCTATCAAACTTGAGAATTTCAGAGGCA
TGTATGATTCATCATAAATAAGGGGATTAGGAGGATACAAAATACCAGGA
AGATTCCAATAATTTGTTCATGAAATACCCACCCACAAAGACATTTCAAA
TACCAGTCAAAAAGTGCAAAACATTTCACATCGAGGTCTGGAATGTTGGC
TTTTCAATGCCGGAATACCGGTAAAGTCCCTCATGAAAGTGTCACTTGTC
ATGAAAGATAACAACATTATATTTTTAAATCCATGCTAGAACTCATGAAA
ACACTTAGTGCATTTAAACCACTATTTTGTCACCATGAATTAAAAAGGGT
TGTAGTAAATTGTAAGCTAACACTACCAGCGATACAGCCAATTCTTTAGT
CATGTGTTCTTTAGAGGCATTTATAGAAACTACCGTGTGAAGTTTTATAT
CTTGAAACCTTAATGGCAGGTAATAAGTTGTTTGTCAGGTCCCAAAAGCA
ACTTAGTTTTGTCATCTTTGTGTTAAAAGGGTTACTACAGTCTTAGGTAA
CGGCCTATAATGGATGAACACAATTTCAAATCTCATAATGGCCTCTACCT
ATTTAAGAAAGATGTTGAAATAAGCATGTATAAAGAAACTGGCTAAAAGT
GGATGGGTTTTTCTTTAGATTACTCCTTTTCAACNAATGTATAAAGAAAC
TGGCTAAAAATGGATGGGTTTTTCTTTAGATTACTCCTTTTCACCTCTCC
TTTTCACCTTCACTTTGATTAGTCCTGTTATGGACTTTTTATTGCAAGGT
TTTGGTAAAACAACGCTGTTGAAATAATCTTTTCagtgaattttaaaaaa
gaGGGGTCTTTAGAGTCTAGCCCATTTCAGCAAGAGGGTTACTATTAACT
AAGCCTATTTTAGAAACACTGATTCAGAAACCCATGAAAATTCTTTGTTA
TAAATTTGTTTAGAAAAACCACTTCTCAACTTACCCGGTAATCCAAAATT
CTCATCCTACAAGAACGCCTTACAAGAATACTGTCAAAAGCGTAAAGCCC
CAGTTCCAAAGTACAATTCTACAAAGTCGTCCACAGGCTTTATTGGTAAT
GTCTCTTTCCTCGATTTCAACTTTACCGCCGAAGCTGCTACAGACACTCC
TAAAGATGCAGACCTTAGNCGAAAAATGTGCAAATTCTAAACAAATAAAG
CGCTAGATCCAATCCTTTATTCTAAACgcagtactcttaggtgccaaata
aacgccccccccgcttgttaatttttagatttttttccaacccccccgga
ccttattagga

Coding sequence (CDS) from alignment at sc0000109:513898..516808+

>TCONS_00010719 ID=TCONS_00010719|Name=TCONS_00010719|organism=Clytia hemisphaerica|type=CDS|length=1896bp|location=Sequence derived from alignment at sc0000109:513898..516808+ (Clytia hemisphaerica)
atggaaaaattGGCTGATGCTAAAGCGCATTCCATTATACTTGACGCTTT
GAGAGGAGCAGGTGAGATGGGTTTGACTCTGGATACACTAGCAAGTATCA
TTGGTGCTGTAAATCAAGAGAAGCTTGTCATTAAACGTCTCTACGATCTT
CAAAACAGAGGGAAAGTTCTGAGCCTCCCAAATAACGCATGGAAAATTAA
ACTTGCCTCAGATGGTTCAACCACAAAACCACCCATCATTACACCAGAAA
AACCACTTCTCAACTTACCCGGTAATCCAAAATTCTCATCCTACAAGAAC
GCCTTACAAGAATACTGTCAAAAGCGTAAAGCCCCAGTTCCAAAGTACAA
TTCTACAAAGTCGTCCACAGGCTTTATTGGTAATGTCTCTTTCCTCGATT
TCAACTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTT
AGNCGAAAAATGTGCAAATTCTAAatggaaaaattGGCTGATGCTAAAGC
GCATTCCATTATACTTGACGCTTTGAGAGGAGCAGGTGAGATGGGTTTGA
CTCTGGATACACTAGCAAGTATCATTGGTGCTGTAAATCAAGAGAAGCTT
GTCATTAAACGTCTCTACGATCTTCAAAACAGAGGGAAAGTTCTGAGCCT
CCCAAATAACGCATGGAAAATTAAACTTGCCTCAGATGGTTCAACCACAA
AACCACCCATCATTACACCAGAAAAACCACTTCTCAACTTACCCGGTAAT
CCAAAATTCTCATCCTACAAGAACGCCTTACAAGAATACTGTCAAAAGCG
TAAAGCCCCAGTTCCAAAGTACAATTCTACAAAGTCGTCCACAGGCTTTA
TTGGTAATGTCTCTTTCCTCGATTTCAACTTTACCGCCGAAGCTGCTACA
GACACTCCTAAAGATGCAGACCTTAGNCGAAAAATGTGCAAATTCTAAat
ggaaaaattGGCTGATGCTAAAGCGCATTCCATTATACTTGACGCTTTGA
GAGGAGCAGGTGAGATGGGTTTGACTCTGGATACACTAGCAAGTATCATT
GGTGCTGTAAATCAAGAGAAGCTTGTCATTAAACGTCTCTACGATCTTCA
AAACAGAGGGAAAGTTCTGAGCCTCCCAAATAACGCATGGAAAATTAAAC
TTGCCTCAGATGGTTCAACCACAAAACCACCCATCATTACACCAGAAAAA
CCACTTCTCAACTTACCCGGTAATCCAAAATTCTCATCCTACAAGAACGC
CTTACAAGAATACTGTCAAAAGCGTAAAGCCCCAGTTCCAAAGTACAATT
CTACAAAGTCGTCCACAGGCTTTATTGGTAATGTCTCTTTCCTCGATTTC
AACTTTACCGCCGAAGCTGCTACAGACACTCCTAAAGATGCAGACCTTAG
NCGAAAAATGTGCAAATTCTAAatggaaaaattGGCTGATGCTAAAGCGC
ATTCCATTATACTTGACGCTTTGAGAGGAGCAGGTGAGATGGGTTTGACT
CTGGATACACTAGCAAGTATCATTGGTGCTGTAAATCAAGAGAAGCTTGT
CATTAAACGTCTCTACGATCTTCAAAACAGAGGGAAAGTTCTGAGCCTCC
CAAATAACGCATGGAAAATTAAACTTGCCTCAGATGGTTCAACCACAAAA
CCACCCATCATTACACCAGAAAAACCACTTCTCAACTTACCCGGTAATCC
AAAATTCTCATCCTACAAGAACGCCTTACAAGAATACTGTCAAAAGCGTA
AAGCCCCAGTTCCAAAGTACAATTCTACAAAGTCGTCCACAGGCTTTATT
GGTAATGTCTCTTTCCTCGATTTCAACTTTACCGCCGAAGCTGCTACAGA
CACTCCTAAAGATGCAGACCTTAGNCGAAAAATGTGCAAATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006009XLOC_006009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010719-exon-sc0000109-1491911889:513898..514268TCONS_00010719-exon-sc0000109-1491911889:513898..514268Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1510915933:513898..514268TCONS_00010719-exon-sc0000109-1510915933:513898..514268Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1575043694:513898..514268TCONS_00010719-exon-sc0000109-1575043694:513898..514268Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1491911889:514495..514680TCONS_00010719-exon-sc0000109-1491911889:514495..514680Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1510915933:514495..514680TCONS_00010719-exon-sc0000109-1510915933:514495..514680Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1575043694:514495..514680TCONS_00010719-exon-sc0000109-1575043694:514495..514680Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1491911889:514945..514980TCONS_00010719-exon-sc0000109-1491911889:514945..514980Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1510915933:514945..514980TCONS_00010719-exon-sc0000109-1510915933:514945..514980Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1575043694:514945..514980TCONS_00010719-exon-sc0000109-1575043694:514945..514980Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1491911889:516461..516808TCONS_00010719-exon-sc0000109-1491911889:516461..516808Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1510915933:516461..516808TCONS_00010719-exon-sc0000109-1510915933:516461..516808Clytia hemisphaericaexon
TCONS_00010719-exon-sc0000109-1575043694:516461..516808TCONS_00010719-exon-sc0000109-1575043694:516461..516808Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010719-proteinTCONS_00010719-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:513898..516808 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.70335	0.601776	2.31125	0.745068	2.51198	2.69793	2.36746	2.5547	0.571867	2.43063	1.42087	1.96573	1.42642	3.09749	2.41644	1.64961	2.39899	2.06029	0.60365	0.630552	0.849951	1.44091	1.18713	1.02598	2.59233	2.11272	0.39346	0.687999	0.491838	0.647351
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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