TCONS_00010717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010717
Unique NameTCONS_00010717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010717 ID=TCONS_00010717|Name=TCONS_00010717|organism=Clytia hemisphaerica|type=transcript|length=1188bp
ATAAATATAGTATTgagcaaaataattttgatattaTTGGTCTGGAGAAT
ACACTTCACTAAAAACAAACATGGTAGCtgtgaaatcgaaagtgtttttt
aaattttatattttgaacgCAAAGGAAGACCAAACGATAATTTTGATCAG
ATCTGATTGTCTGAGGTTTTTTAATGTAATGTCAAACTTACCAACCCCAG
CATTCAAAAGTTTGACTCAAGaagatttggaaaaagtttATGAACCAGCT
GAAGATACGTTTCTGTTGATCGACTCTCTTGAAAGAGATAGATTGTTAAT
CCAAAATAAAAgACCTTGTATTGCTTTGGAGCTTGGTCCAGGATCTGGTA
TTGTGATTACATTTCTTGCAAAACATATCACTCCCGGAATTTGTTGTTTt
GCTAGTGACATCAATTTCCATGCATCATACTGTACACGAAAGACGTCACT
TGAAAACAAGGTTACCGTTGAGGTGACTACTGATTATTTAGTTGGTAGTT
TTTGCAAGAGAATGCGCAAGAATATTGATGTTTTGATATTCAATCCACCC
TACGTTGTCACCCCTTCGTCTGAGgtAGGCAGCAAGGATTTGTTAGCTTC
TTGGGCTGGTGGTGTCGATGGCAGAGAGGTTATCGACAAGTTCTTGCCAA
TAGTACCAGAATTGTTATCAGAAGAAGGCTGTTTTTATCTGTTGCTACTT
GAGCAAAATAAACCAGACGAGATCGTTGAAGTGATGAAAGACAAGTATAA
TCTACAAGCAAGCCTCGTATTGGAACGGAAGACTGGACCCGAGTATCTGA
AAGTGTTTCGTTTCGAATTCATAACGTGAAGAAAACTTATTACTTTGATA
AAAGGAGGAGAGTTGGAACCGATTGCTATATTCattatatgcaccattgc
atGAGATTTGAAAGGGTATTTTTTTTAATGGTACAGAAAATGTTTACCTG
CGAAACTttccgaagctcatttttcaaatatccgtagttctggtcttttt
ccgctagaaaagtggcaTTGGAAACTAAGTGCAGGCAGTAGAATGTTATG
CAAAACGCCGATACAATACGAGTCAGAACATGCATTGTCTTACCGACAAA
ATGTTACATAGTCAATTTGGACAATATTGACTATATTCTTGAAACCtaaa
aaaattttagtttattgTGTTGTACGTgaagtcaatca
Run BLAST on NCBI

protein sequence of TCONS_00010717-protein

>TCONS_00010717-protein ID=TCONS_00010717-protein|Name=TCONS_00010717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MVAVKSKVFFKFYILNAKEDQTIILIRSDCLRFFNVMSNLPTPAFKSLTQ
EDLEKVYEPAEDTFLLIDSLERDRLLIQNKRPCIALELGPGSGIVITFLA
KHITPGICCFASDINFHASYCTRKTSLENKVTVEVTTDYLVGSFCKRMRK
NIDVLIFNPPYVVTPSSEVGSKDLLASWAGGVDGREVIDKFLPIVPELLS
EEGCFYLLLLEQNKPDEIVEVMKDKYNLQASLVLERKTGPEYLKVFRFEF
IT
Run BLAST on NCBI

transcript from alignment at sc0000109:468000..485263+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010717 ID=TCONS_00010717|Name=TCONS_00010717|organism=Clytia hemisphaerica|type=transcript|length=17264bp|location=Sequence derived from alignment at sc0000109:468000..485263+ (Clytia hemisphaerica)
ATAAATATAGTATTgagcaaaataattttgatattaTTGGTCTGGAGAAT
ACACTTCACTAAAAACAAACATGGTAGCtgtgaaatcgaaagtgtttttt
aaattttatattttgaacgCAAAGGAAGACCAAACGATAATTTTGATCAG
ATCTGATTGTCTGAGGTTTTTTAATGTAATGTCAAACTTACCAACCCCAG
CATTCAAAAGTTTGACTCAAGaagatttggaaaaagtttATGAACCAGCT
GAAGATACGTTTCTGTTGATCGACTCTCTTGAAAGAGATAGATTGTTAAT
CCAAAATAAAAggtaaaaattttattattttcacaaaagtttattcttta
cactttcgttttcaaaatctgttGAACATGGATTTTGGCTTGTGAAGATT
ACCTTGAGTAACATCTGTGATGACATTTATAATAGGCAATGCCAATGGCC
AGCATCCCTCAgctcaatagaccttttcgcctttccatccgccatattga
attgtatgcaaaaattatggtggccgaattgccgtggtgaaattccctta
gaaagtatgcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aacttacatgcataattggcattatattaaagtgtaatcttgtagaaaaa
agattaaatttgcttctcttgaaaactaaaaacaaattatattcactcat
ctcttagaacaagtgacaagcacttcaaaagaccataacattagacagaa
actcaaactgaaaaatcacccgcgaaggtaaaaaataatccttattcggc
tgacggcaaattattctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNagaaagtttgatgtgtgtactccg
tcttcgtggaatttcttaatggcatgaaaacagaatatgcaatgtcttta
agaacaaattcctaaaaggcttttgttgttctgtaaatatttccttttgg
gtTAAGAAATTGCaacttttattgttctaatgattataatatttatttat
tcaacCCAATGCAAACATTCCAGTAGTGAATAGCTTTGCATTTTTTAACA
TACAAGGGCTTTGTCCACAAACAGTACCCAGCAAAGTTCCCTTTATTAAA
GATAATGTTTGTAATGAAAACCAACTTTTTGTTGGATTGTCAGAAACTTG
GTTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNTTTCAAAGTTAGAAACCGTACCAAATATCATTTTTGGAG
GTGATTTCAACCTTCCAAAAGCAACTTGGCCTGAGGGCCTTCCAAAATCA
GGATGTACTATCAATGACCGTCTTATTCTAAACTCTTTGAATCAGTTTTG
CAACGAATTCTTCATGTCACAATATATCGATTTGCCAACACACAAGGACG
GATATACATTAGACCTTGTTTTCACTAACAACGAACAAATAATACACAGC
TACACAACAGTACCTGTATTGCAAAGCACATCACATCACGAAATTGTACT
AGTATCAACAACTCTGAAAGTTCAAAACTCCTTTCTGGACGATGATAAAA
CAAGAGCCACGCACAAAATTCAACACACTGAATTATTTTGCTGATGACAT
TGATTGGGAAACTATTAAAGATGATCTCAAATATGTCAACTGGCCAAGTG
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ACAAATCATTGGTTATTCCAGTCATTGAATATTGCTCAGTCCTATGGAGT
CCAAGTGCTGTCAGTTCTACCCAAAGATTAgaagaaatccaaaaatcaTT
TCTCACTTCAAAGAAGAAGGGAGAGATATCGGATCCTGTGTACATGGAAA
ATAGCTGAAAATCTGGTTCCAAACATCAAcaataaatttcaattcaagGA
ACTCCCAAGATTGGGAAGGATGTGTGTTCGCACCCATAGTTCAAAACTAC
ATGATACCACGCTTGTTGTGCAAGGTGCTAAGTTATTCAATTCAATGCCC
AAGAGTATTagagatatgaagaatgttacaatcgaaaagttcaaaaactc
TCTAGACAGACACCTCAGTTCGATCCCAGACGAGCCACAGATCCATGGTT
ACACAGGGTGCAGGAGAGCCGACTCTAACTCCATTCTTGACATGAAAAAT
GTTTAGTTGCCGACATCCTTCCTTTACAGGTTTGATGGATGCAGCATTTT
GGTGTGAAGCAGAAAGTTTCTTGCCAGAGCATGAAGCTCGAAGACAACCA
AAagtataagatgctttgttgtctttttaatctttgtgtaaacttgcata
tgttttgcatattttccaactaaatccaaccacggcattttcgttcctgt
atttttgcatacaattcaagatggcagacggaaaggcgaaaaggtctatg
ctCAAAACGTTTGACTTCCTGTGCGAAAAAGCATTGTATTGATAATTGAG
CTTTACCTAAAACGTAGTGGTCTAAGAAAacggctattcttttttagaat
caaccttacaatctagtttttatatttataaaaactagattgctgacgtg
tggaaaggaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTTTGCGCCTGCGTTTGGtgactgacagtttc
agtttcagtttcactactttcactttcactttcagccagcgagtgagcga
gcGATTCTTTGTAAGAGAAATAACAGattttgtaataagaaattatgttt
tgtatgagaagcaattattgttatttggtttaattggttcagtgtatcaa
atctctcagtttagttgacactttggtatcttcattgcgtcacagcgaaa
ggtttgtttttattttagtttgtatctttgaaagaccccattggatttag
gcagggctgtcggatttaggaccactcacggtacccTGGCATACCCTGAC
AAAACGTAATATTTCATTTGTTCTTCTATTTTGAAGCGGTTGCACTTCAG
TGTTTAACTTTATCACGTCAGATTTTTTAACGACTCTTCTTTTAAAAGGG
GGAAATCAGGGTAGTCTCTGCTAAAGCCTAAAAAATATGGTTGGCAGATG
ATATCATCCACCAGAAtgcaaaatgaaatttttcaatctgcagACCTAGA
CGGAGGTtcattatcagttagggttaaaAGGTTGGAGCTGGAGAGTCACA
ATATGAGGCCGAAGGCCTTCCTAGGGGCATTCGTACCCTGAGACTGCTCA
GATTTGGTCGTTCTAGCCAGGAGCCCatttcaccggtacgggcaaatttc
agaaaaatacttagaaaaacagttagaaacaccaggaaacacttgagaaa
gtcagacaatcaggatagaagatagaaaagtagaaaatagggggaaataA
AAGTAGGGGGGATGctattttgcaaaaatggcaTAAATTCTTAGtccatt
tgtcaaaagttgcctttgggtataaaaagaagaaaaaatcatgtTAATTC
CCTGTGGTACCCTTTTCAAGGTTGCCACAGGCAGGGTGCCACCGTCGCTC
cgccagcaaaatcgaaatttcaaaaattttcaaaacatNCAAGGTTGCCA
CAGGCAGGGTGCCACCGTCGCTCcgccagcaaaatcgaaatttcaaaaat
tttcaataatagtgaagtgacccctcatttgaaaggtattttcatgctga
ttaagaaagtCTATATAATGAGGTTGAATAACACTGTCACAAAACGTAAT
TTCCGACAGTTggcaaaattttgaggattttgctaaaaacgcaatttttt
gatcgtttttctTAAGTTACTTCTTGTTAGAGTGTTTTTCACCCTtacaa
tattgattttcttaatcagcatgaaaatacctttcaaatgaggggtcact
tcactatgttttaaaaatatttgaaattgcGATTTTGCTGGCGGAGCGGC
GGTGGCACCCTACCCgtggcaaccttgaaaaaagtGCCAAAgggttttta
catgaatttttcttctttttatacccaaaggcaacttttgacaaatgggc
ttaaaaaattagtCCTAACATCCCCCCCTAATTTTTGTGCGCTTAAAGTA
ATTGATCtggtaattaaaaaaaaaaattttcaacattatttcCTTGATCT
CCNTTAGTCCTAACATCCCCCccctaataaaatagaatgcatcctggtgg
atgatatcgtttgccaaccaaaAAATACACAGGGACGAGGTTGGCCTTTT
TGCTTTTAGGCAACCATCAATAATATGTTCTGTTCGGCCTGACCAACTCA
CTTTCGAAACATAAATCCCAAGTCAGCCCAGTCGCAATaatgtcagaaaa
ttttttccatagCTAAGCCCTTTTCTACATCACCATTTGCTTCACCAGTT
TTAAGGTCAACACGTCATTTCACTGGATctattttagtaaatttgaaCAG
GGTGGCAAGCGATTCTGTTTTTTGTCAACTAGATTCTTTCGGATTTACTA
AATTTAAAACATCCGACAATATTTGCTACCAACAGATCGACTGGATTTGG
GGATGTTTTGTGACCCGAACGGAACATATTATTGATATACCCCTAGGCTT
GTAAACAAACACAGACACAACGCACCAGGTgcggcaatttttttaaaaaa
aagccaaaattttcCTCTATGTCGGTAAAATTGCTTCTATTAATGATTTA
ATTAATGATTTGCGCTTGTTGCCTTTCCAAAAAGACTAAAAAATCATGTT
TACAGTACTGAGTGGtgttcaaaatccaaaaagtcctataccataagttg
gtctaatgtcgacatccctcatctaattcccaCACCCTTTTCAGAGCTAG
GAAAAATAGGAAagtcggaatcactgattgaaaaagataaattttccCCT
CTGACCACTacacaaagaaataaaatttaaaacaggGATTCCAAGAGGAT
ACTTAATTGTCATTTATTAAAGTTTCACGCACATGGTGATTTTGAAGCTA
CGTTGTAACTTTTCCTTTTTGTTTATATGAATTTGAATTGATTGTTGAAG
GTAAATTAGCTAACTACCGTTTATCTTGTTTATTGATAGACCTTGTATTG
CTTTGGAGCTTGGTCCAGGATCTGGTATTGTGATTACATTTCTTGCAAAA
CATATCACTCCCGGAATTTGTTGTTTGtaagtttattttcttatcttttg
AGTCTTAAAAGTTAGTTCAAGCCCAATCAATTTTCAGAGAGGGCTTATAA
GTTGAACCTGAAAATTATAAGAAAGCAGTTTATCCTTAAAATACACATGA
TCACTGATTCGTTTTTGGACAAATCAATTAACATACAATATCTGTGTCAC
GAAGTCAAATATTCATCTAATacctttttttcgaaattttagttGGGtga
ttgagaattttggttagaTTTTGTCTTGATAGATTGACTGGAATTCCCTT
CAGGTGACTATTTTGaataattgattttttattattagtGCTAGTGACAT
CAATTTCCATGCATCATACTGTACACGAAAGACGTCACTTGAAAACAAGG
TTACCGTTGAGGTGACTACTGATTATTTAGTAAGTGAAATTTTACTCCTA
CAAATTGTGTGCGGACTTGCGTGTCTTTCTGTCTGATATTGGTTTTTGGG
GCCTGGTAATAGTTTTTAGCCAAAACGAGGCTATAACTTTGGGGCAccct
ggagacttaaaaaatggtaagatttgttttttttcattttttgaaatctt
gatttttttggccTGGGGACGAGTCCTTCGCCAAAACAAGAGCAAAactt
ttggggcagcctggagatttcaaaaaaggtcggatttggctgaagtTTGG
CGCACTTGTTCCTGGAGTGAATATCTGGGGAGTTTTGAATTTTAGGGGAT
AAGCATCAGGCACtagtttgttttgtttgctTTGGTACAATAGGGTCTAT
AAAATTttaagccactgaagttgagacCAGTGCGTTGCACACGTTTGACT
ATGTATACAAACTtgtcaaataaaaatgaagtaaTCTTTAAATATTCAGG
TTGGTAGTTTTTGCAAGAGAATGCGCAAGAATATTGATGTTTTGATATTC
AATCCACCCTACGTTGTCACCCCTTCGTCTGAGGTAcacattttataaga
ataaaactATATAAggacataaggcttcaatgctCACCTGATTTATAtgg
gaaatggacaaaaatgctcacaagatggtgaaaatgagaacaattCTAGG
TTTGAAACTCAGAAAGTtaggaacatccgaaggcttcaaaaatttggatg
ctctcataaaaaaacgtgtatcctaCTTTGGTCTAATTTATTGTCAATTT
TAAGGGACTACAAAAGACTACAAAAAAGCCCCAATCACTCAATCATATAA
ACCATTAGAAGTCTCAGTGAAGGCAGGTCGTTTCTTCGCTTTCGAATCAT
TATTTCTAGTCCAGAcaataaaaataattctttaatagacgatatcggct
ttccgaattctccccgaatgattacccatgatgcattgcgcaaaaaattc
ACGGATAGTCAATATCTTCCGTGAATtcttttgcgcaatgcatcatgggt
aatcattcgaggagaatttggaaagccgatatcgtctattgtatGAATCG
TGCGTGAATAATGCGTTTGTTCGAAATTTTCCTTCTTCCATTTCAAGTCA
TTAGATATGAATGTTCTCTCCTGCTACCCTTACATTTTTATTGCAATTAA
TTTAACGATGAGTGTGTACTCTTTTTTATGACACGAAAAGAAAGAGTGCA
CACCAAACGTGAatatatatagctataaactcattgtttttgttgttttt
tttaattaggtAGGCAGCAAGGATTTGTTAGCTTCTTGGGCTGGTGGTGT
CGATGGCAGAGAGGTGAAgaataaatttataaaatatttcacacACTTCC
TTTTACCAATAGCTTTTGTGGAGACTGGTAACGAAAATACATGGAAAATT
CTTTTCGACGACGATATCGAAAACACAGGAGCGCTCATGCTAAAATCCTT
CCATtaaattactttaatgggattaattttcgcgggtattAAATTTCTCG
GCTTGCACTATTGggtgacaatattttcacgactTTATGCCTTTTACCAT
CAAACcgtgcatgttggttgttgaaatacacattattagcgcctctttga
tgccagtaaacattcaaaaagtatttatttgacattatttgagttttgtt
tagaaatattttgcggATAAGGCTTTCCAATTTTCCATTTggaattaagg
gctctgaccatagtgaattttgatatttttcatgtacaaaatataaattt
ctgcctgatgtagctaacaaaactttgacatgttatacattttctgttaa
gcCAACTTTCCTTCagtctcaaaatttaagaatcgcaaagaaaaaatttg
acgaagaaTAAAATGAGAACTTTTGCgacgaagagtatttcaactttgaa
gagcttattttggtcgaagaagaaatattttgagaaaaaaattgggtaga
tggtgtatcttttaccgaactaagAATATAATTCtggaaagtttttctaa
aagcttgCTTGTCTCAAGATCTTGAaaaaagtgctttttgaccaattttt
catcccaattgttcaaagaaaaacagctattacttttgatacatcaattt
agaaaattttcccgaaatatttaaaacagttcaattctttgcggacagtt
tgaaaaaatttcgaaacaaaaaggttaattaccgattaaaactttttata
aaagagggtgatgcaacattattaacgtctttttaaagttcataacgtca
tttttgtaattaaattcttacttatttttaagggatttgatcaaaaagca
atttgtaaaggcaactctttgttaaaagtgtaacAGGACctgaaacataa
cttttatgctcaaataccaaaatcaatttttgactatggtcagagccctt
aaattcgcggatgacacccaaatccgcgaaatctgcgaaatttaaATCCA
cgtgaaagtttatcccattaaagtaataaAGTTGATCTATTCGAAGCTAA
AATTAATATCCACTCCATGTACtaatttttcgcgtgtatttcatttcgcg
agtttttaagcaaaatttcgcgaaatttagtactgtttaaatttttaaaa
gcataaaatcGCGAAATAAAATATGtgggaaatttttcaaaataggcGAA
AACCgcgattttttaaattgaagagagaataaaatttaataagggatcaa
agatattttgttacaattttgaTACTATATTTGGAACTTAGTATGTTATG
TTTCAAGTTAAATCACTCTTTTCTTGTTTTAAcacttttctttaaaaata
tcctATTTATTgtatcgcgaaatttaatacaggcgaaaaattacaaaaag
tggTACTCGCGAAACACGTTTCTCAGCAAATTTAGTACccagaaaaatat
atataagaaTTGTTAATTTCTTTCTAGGTTATCGACAAGTTCTTGCCAAT
AGTACCAGAATTGTTATCAGAAGAAGGCTGTTTTTATCTGTTGCTACTTG
AGCAAAATAAACCAGGTataattaaatttattttacagTACTTTATGCTA
ATTGTTATCCCATGCCTGCAATATATATTGTAAAATCCgggaggggtact
taggcaaaataggTACTGGATATGTGCAAGCCATAAGGATCCCTATTTCA
CACTctcgaaagtccctcaaaggggtacaaaaaccattaaaaatcaattg
agtctctgaaagggttccaaaattacgaaaatcaaaaatcaattctctca
aagggtcataaattcttgaaatttggactaaagtttgaaagttttgagtg
aaatttgggaaaagaaaatctctaagggttacaaaaacgtcaaaaaatgg
acaacattttcgaaattcaatctctctaagggttgattTCCAAACTTTGG
CAAACCTCGTCTCGTACCCCCGGATAAAATGTTTGTTAAGTAGAAACCCT
CCTATTCTAACCCTCCTATTATAGTTTTTCAAAGATATACCCTTTGAATT
TCAATTGCAACCCTCTGGATTTTCAGAGACACTTTTGaactggcggattt
aagacaatagagcaagtacgtcggaaacatgcgaaggagagcaacgctcg
ttaaaagacaatgaaactACAATTATAAATCTCTtcatctgataagttcg
acatagGCTAAAACCCCtcgttttttggacctaccccggtggaggtccta
taaattaacctgtgttagtccgttcgtccgttcgttcaaGTTCCTTGgtt
cgttagttcgttcgttcgttcgtctgttaccaacttttctcaggattgaa
tcataggaatcttttgatttttggtacaaaggtgcaaaatggtagtggcc
aaaatNNNNNNNNNNNNNNNNNNNNNNNNNtgttaccaacttttctcagg
attgaatcatatgaatcttttgatttttggtacaaaggtgcaaaatggtg
gtggccaaaatgtgacggagcccgatcttcgaagaaaaaaaattttggcc
aaattttggccaaaaaacggctaaaaaactggttttttagactttgtgaa
aaattgggtcattaattttttctgattttttgtatgaaagtagggtacca
tcataggtaaaaaatgactcaagcagatttttgcaaaaaaattctgttgg
ctcaaaaaacgcatgtttatctataagaatcactattaataagcatacat
caatgttcttagtcaaattactcaatttttttatgagatagNaatcacta
ttaataagcatacatcaatgttcttagtcaaattgctcaatttttttatg
cgatagatgttttttttcctcatgagggcttacttttagagaTTATGTGT
Gtaaagacatgaaattttggttgcttagcgtgtttttatagaaaaactgg
ccaaattcgatattttgttataagcacattatcaattacttaggtattag
cttttctcgagattggctctttcattctttattattttttgcacaaagat
gcataactttaaacccttaagtaaatgtgacggagcccgattttcgaaaa
aaaatgtttttgggcaaatttgggccaaaaaatggctaaaaaaagggttt
tttggactttgtgaaacatttgatcattgtttttttctgattttttacat
gaaagtaggtaaaagatggctcaagcagtttttgtaaaaaaagaattttt
cagctaaaaaaacgcatctttatttataagaatcactattaataaaagCA
TACATccatgttcttagccaaattactcaattttttaatgaaaaagatgt
tttttttgctcacgaagtcttgaatatgaaagattatttcaagagcatga
aattttggtttcttaacgtttttttataagaaacaaacgactaattttga
tcgatcgtcactatttgtgttctgtttaacggtcatgctcacatagatat
caattatatttgttaatggcataaccaggtaggtccataaaagtatcact
tgttttacaTCCATTTGATACTGTATTCAAAACCTCAACAagctcaaaaa
aaaagaaagaaaaagctttaaaaatataacatttttattTAGACGAGATC
GTTGAAGTGATGAAAGACAAGTATAATCTACAAGCAAGCCTCGTATTGGA
ACGGAAGACTGGACCCGAGTATCTGAAAGTGTTTCGTTTCGAATTCATAA
CGTGAAGAAAACTTATTACTTTGATAAAAGGAGGAGAGTTGGAACCGATT
GCTATATTCattatatgcaccattgcatGAGATTTGAAAGGGTATTTTTT
TTAATGGTACAGAAAATGTTTACCTGCGAAACTttccgaagctcattttt
caaatatccgtagttctggtctttttccgctagaaaagtggcaTTGGAAA
CTAAGTGCAGGCAGTAGAATGTTATGCAAAACGCCGATACAATACGAGTC
AGAACATGCATTGTCTTACCGACAAAATGTTACATAGTCAATTTGGACAA
TATTGACTATATTCTTGAAACCtaaaaaaattttagtttattgTGTTGTA
CGTgaagtcaatca

Coding sequence (CDS) from alignment at sc0000109:468000..485263+

>TCONS_00010717 ID=TCONS_00010717|Name=TCONS_00010717|organism=Clytia hemisphaerica|type=CDS|length=5313bp|location=Sequence derived from alignment at sc0000109:468000..485263+ (Clytia hemisphaerica)
ATGGTAGCtgtgaaatcgaaagtgttttttaaattttatattttgaacgC
AAAGGAAGACCAAACGATAATTTTGATCAGATCTGATTGTCTGAGGTTTT
TTAATGTAATGTCAAACTTACCAACCCCAGCATTCAAAAGTTTGACTCAA
GaagatttggaaaaagtttATGAACCAGCTGAAGATACGTTTCTGTTGAT
CGACTCTCTTGAAAGAGATAGATTGTTAATCCAAAATAAAAgACCTTGTA
TTGCTTTGGAGCTTGGTCCAGGATCTGGTATTGTGATTACATTTCTTGCA
AAACATATCACTCCCGGAATTTGTTGTTTtGCTAGTGACATCAATTTCCA
TGCATCATACTGTACACGAAAGACGTCACTTGAAAACAAGGTTACCGTTG
AGGTGACTACTGATTATTTAGTTGGTAGTTTTTGCAAGAGAATGCGCAAG
AATATTGATGTTTTGATATTCAATCCACCCTACGTTGTCACCCCTTCGTC
TGAGgtAGGCAGCAAGGATTTGTTAGCTTCTTGGGCTGGTGGTGTCGATG
GCAGAGAGGTTATCGACAAGTTCTTGCCAATAGTACCAGAATTGTTATCA
GAAGAAGGCTGTTTTTATCTGTTGCTACTTGAGCAAAATAAACCAGACGA
GATCGTTGAAGTGATGAAAGACAAGTATAATCTACAAGCAAGCCTCGTAT
TGGAACGGAAGACTGGACCCGAGTATCTGAAAGTGTTTCGTTTCGAATTC
ATAACGTGAATGGTAGCtgtgaaatcgaaagtgttttttaaattttatat
tttgaacgCAAAGGAAGACCAAACGATAATTTTGATCAGATCTGATTGTC
TGAGGTTTTTTAATGTAATGTCAAACTTACCAACCCCAGCATTCAAAAGT
TTGACTCAAGaagatttggaaaaagtttATGAACCAGCTGAAGATACGTT
TCTGTTGATCGACTCTCTTGAAAGAGATAGATTGTTAATCCAAAATAAAA
gACCTTGTATTGCTTTGGAGCTTGGTCCAGGATCTGGTATTGTGATTACA
TTTCTTGCAAAACATATCACTCCCGGAATTTGTTGTTTtGCTAGTGACAT
CAATTTCCATGCATCATACTGTACACGAAAGACGTCACTTGAAAACAAGG
TTACCGTTGAGGTGACTACTGATTATTTAGTTGGTAGTTTTTGCAAGAGA
ATGCGCAAGAATATTGATGTTTTGATATTCAATCCACCCTACGTTGTCAC
CCCTTCGTCTGAGgtAGGCAGCAAGGATTTGTTAGCTTCTTGGGCTGGTG
GTGTCGATGGCAGAGAGGTTATCGACAAGTTCTTGCCAATAGTACCAGAA
TTGTTATCAGAAGAAGGCTGTTTTTATCTGTTGCTACTTGAGCAAAATAA
ACCAGACGAGATCGTTGAAGTGATGAAAGACAAGTATAATCTACAAGCAA
GCCTCGTATTGGAACGGAAGACTGGACCCGAGTATCTGAAAGTGTTTCGT
TTCGAATTCATAACGTGAATGGTAGCtgtgaaatcgaaagtgttttttaa
attttatattttgaacgCAAAGGAAGACCAAACGATAATTTTGATCAGAT
CTGATTGTCTGAGGTTTTTTAATGTAATGTCAAACTTACCAACCCCAGCA
TTCAAAAGTTTGACTCAAGaagatttggaaaaagtttATGAACCAGCTGA
AGATACGTTTCTGTTGATCGACTCTCTTGAAAGAGATAGATTGTTAATCC
AAAATAAAAgACCTTGTATTGCTTTGGAGCTTGGTCCAGGATCTGGTATT
GTGATTACATTTCTTGCAAAACATATCACTCCCGGAATTTGTTGTTTtGC
TAGTGACATCAATTTCCATGCATCATACTGTACACGAAAGACGTCACTTG
AAAACAAGGTTACCGTTGAGGTGACTACTGATTATTTAGTTGGTAGTTTT
TGCAAGAGAATGCGCAAGAATATTGATGTTTTGATATTCAATCCACCCTA
CGTTGTCACCCCTTCGTCTGAGgtAGGCAGCAAGGATTTGTTAGCTTCTT
GGGCTGGTGGTGTCGATGGCAGAGAGGTTATCGACAAGTTCTTGCCAATA
GTACCAGAATTGTTATCAGAAGAAGGCTGTTTTTATCTGTTGCTACTTGA
GCAAAATAAACCAGACGAGATCGTTGAAGTGATGAAAGACAAGTATAATC
TACAAGCAAGCCTCGTATTGGAACGGAAGACTGGACCCGAGTATCTGAAA
GTGTTTCGTTTCGAATTCATAACGTGAATGGTAGCtgtgaaatcgaaagt
gttttttaaattttatattttgaacgCAAAGGAAGACCAAACGATAATTT
TGATCAGATCTGATTGTCTGAGGTTTTTTAATGTAATGTCAAACTTACCA
ACCCCAGCATTCAAAAGTTTGACTCAAGaagatttggaaaaagtttATGA
ACCAGCTGAAGATACGTTTCTGTTGATCGACTCTCTTGAAAGAGATAGAT
TGTTAATCCAAAATAAAAgACCTTGTATTGCTTTGGAGCTTGGTCCAGGA
TCTGGTATTGTGATTACATTTCTTGCAAAACATATCACTCCCGGAATTTG
TTGTTTtGCTAGTGACATCAATTTCCATGCATCATACTGTACACGAAAGA
CGTCACTTGAAAACAAGGTTACCGTTGAGGTGACTACTGATTATTTAGTT
GGTAGTTTTTGCAAGAGAATGCGCAAGAATATTGATGTTTTGATATTCAA
TCCACCCTACGTTGTCACCCCTTCGTCTGAGgtAGGCAGCAAGGATTTGT
TAGCTTCTTGGGCTGGTGGTGTCGATGGCAGAGAGGTTATCGACAAGTTC
TTGCCAATAGTACCAGAATTGTTATCAGAAGAAGGCTGTTTTTATCTGTT
GCTACTTGAGCAAAATAAACCAGACGAGATCGTTGAAGTGATGAAAGACA
AGTATAATCTACAAGCAAGCCTCGTATTGGAACGGAAGACTGGACCCGAG
TATCTGAAAGTGTTTCGTTTCGAATTCATAACGTGAATGGTAGCtgtgaa
atcgaaagtgttttttaaattttatattttgaacgCAAAGGAAGACCAAA
CGATAATTTTGATCAGATCTGATTGTCTGAGGTTTTTTAATGTAATGTCA
AACTTACCAACCCCAGCATTCAAAAGTTTGACTCAAGaagatttggaaaa
agtttATGAACCAGCTGAAGATACGTTTCTGTTGATCGACTCTCTTGAAA
GAGATAGATTGTTAATCCAAAATAAAAgACCTTGTATTGCTTTGGAGCTT
GGTCCAGGATCTGGTATTGTGATTACATTTCTTGCAAAACATATCACTCC
CGGAATTTGTTGTTTtGCTAGTGACATCAATTTCCATGCATCATACTGTA
CACGAAAGACGTCACTTGAAAACAAGGTTACCGTTGAGGTGACTACTGAT
TATTTAGTTGGTAGTTTTTGCAAGAGAATGCGCAAGAATATTGATGTTTT
GATATTCAATCCACCCTACGTTGTCACCCCTTCGTCTGAGgtAGGCAGCA
AGGATTTGTTAGCTTCTTGGGCTGGTGGTGTCGATGGCAGAGAGGTTATC
GACAAGTTCTTGCCAATAGTACCAGAATTGTTATCAGAAGAAGGCTGTTT
TTATCTGTTGCTACTTGAGCAAAATAAACCAGACGAGATCGTTGAAGTGA
TGAAAGACAAGTATAATCTACAAGCAAGCCTCGTATTGGAACGGAAGACT
GGACCCGAGTATCTGAAAGTGTTTCGTTTCGAATTCATAACGTGAATGGT
AGCtgtgaaatcgaaagtgttttttaaattttatattttgaacgCAAAGG
AAGACCAAACGATAATTTTGATCAGATCTGATTGTCTGAGGTTTTTTAAT
GTAATGTCAAACTTACCAACCCCAGCATTCAAAAGTTTGACTCAAGaaga
tttggaaaaagtttATGAACCAGCTGAAGATACGTTTCTGTTGATCGACT
CTCTTGAAAGAGATAGATTGTTAATCCAAAATAAAAgACCTTGTATTGCT
TTGGAGCTTGGTCCAGGATCTGGTATTGTGATTACATTTCTTGCAAAACA
TATCACTCCCGGAATTTGTTGTTTtGCTAGTGACATCAATTTCCATGCAT
CATACTGTACACGAAAGACGTCACTTGAAAACAAGGTTACCGTTGAGGTG
ACTACTGATTATTTAGTTGGTAGTTTTTGCAAGAGAATGCGCAAGAATAT
TGATGTTTTGATATTCAATCCACCCTACGTTGTCACCCCTTCGTCTGAGg
tAGGCAGCAAGGATTTGTTAGCTTCTTGGGCTGGTGGTGTCGATGGCAGA
GAGGTTATCGACAAGTTCTTGCCAATAGTACCAGAATTGTTATCAGAAGA
AGGCTGTTTTTATCTGTTGCTACTTGAGCAAAATAAACCAGACGAGATCG
TTGAAGTGATGAAAGACAAGTATAATCTACAAGCAAGCCTCGTATTGGAA
CGGAAGACTGGACCCGAGTATCTGAAAGTGTTTCGTTTCGAATTCATAAC
GTGAATGGTAGCtgtgaaatcgaaagtgttttttaaattttatattttga
acgCAAAGGAAGACCAAACGATAATTTTGATCAGATCTGATTGTCTGAGG
TTTTTTAATGTAATGTCAAACTTACCAACCCCAGCATTCAAAAGTTTGAC
TCAAGaagatttggaaaaagtttATGAACCAGCTGAAGATACGTTTCTGT
TGATCGACTCTCTTGAAAGAGATAGATTGTTAATCCAAAATAAAAgACCT
TGTATTGCTTTGGAGCTTGGTCCAGGATCTGGTATTGTGATTACATTTCT
TGCAAAACATATCACTCCCGGAATTTGTTGTTTtGCTAGTGACATCAATT
TCCATGCATCATACTGTACACGAAAGACGTCACTTGAAAACAAGGTTACC
GTTGAGGTGACTACTGATTATTTAGTTGGTAGTTTTTGCAAGAGAATGCG
CAAGAATATTGATGTTTTGATATTCAATCCACCCTACGTTGTCACCCCTT
CGTCTGAGgtAGGCAGCAAGGATTTGTTAGCTTCTTGGGCTGGTGGTGTC
GATGGCAGAGAGGTTATCGACAAGTTCTTGCCAATAGTACCAGAATTGTT
ATCAGAAGAAGGCTGTTTTTATCTGTTGCTACTTGAGCAAAATAAACCAG
ACGAGATCGTTGAAGTGATGAAAGACAAGTATAATCTACAAGCAAGCCTC
GTATTGGAACGGAAGACTGGACCCGAGTATCTGAAAGTGTTTCGTTTCGA
ATTCATAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006008XLOC_006008Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010717-proteinTCONS_00010717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010717-exon-sc0000109-1491911889:468000..468311TCONS_00010717-exon-sc0000109-1491911889:468000..468311Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:468000..468311TCONS_00010717-exon-sc0000109-1510915933:468000..468311Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:468000..468311TCONS_00010717-exon-sc0000109-1575043694:468000..468311Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:479189..479275TCONS_00010717-exon-sc0000109-1491911889:479189..479275Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:479189..479275TCONS_00010717-exon-sc0000109-1510915933:479189..479275Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:479189..479275TCONS_00010717-exon-sc0000109-1575043694:479189..479275Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:479588..479678TCONS_00010717-exon-sc0000109-1491911889:479588..479678Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:479588..479678TCONS_00010717-exon-sc0000109-1510915933:479588..479678Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:479588..479678TCONS_00010717-exon-sc0000109-1575043694:479588..479678Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:480149..480232TCONS_00010717-exon-sc0000109-1491911889:480149..480232Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:480149..480232TCONS_00010717-exon-sc0000109-1510915933:480149..480232Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:480149..480232TCONS_00010717-exon-sc0000109-1575043694:480149..480232Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:480959..481012TCONS_00010717-exon-sc0000109-1491911889:480959..481012Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:480959..481012TCONS_00010717-exon-sc0000109-1510915933:480959..481012Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:480959..481012TCONS_00010717-exon-sc0000109-1575043694:480959..481012Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:482627..482714TCONS_00010717-exon-sc0000109-1491911889:482627..482714Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:482627..482714TCONS_00010717-exon-sc0000109-1510915933:482627..482714Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:482627..482714TCONS_00010717-exon-sc0000109-1575043694:482627..482714Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1491911889:484792..485263TCONS_00010717-exon-sc0000109-1491911889:484792..485263Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1510915933:484792..485263TCONS_00010717-exon-sc0000109-1510915933:484792..485263Clytia hemisphaericaexon
TCONS_00010717-exon-sc0000109-1575043694:484792..485263TCONS_00010717-exon-sc0000109-1575043694:484792..485263Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:468000..485263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16746	4.91205	3.03632	2.28814	3.66525	2.85771	2.84203	3.05323	4.88603	5.5604	6.20479	4.24773	3.08496	2.65312	2.79855	2.95911	5.22323	4.34983	1.65647	2.70085	4.34467	3.94783	7.18826	6.9507	3.89079	3.68079	2.38515	2.49246	3.94177	3.31938
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004557PrmC-related
IPR007848Small_mtfrase_dom
IPR002052DNA_methylase_N6_adenine_CS
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008276protein methyltransferase activity
GO:0008168methyltransferase activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0032259methylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008276 protein methyltransferase activity
Blast
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BLAST of TCONS_00010717 vs. Swiss-Prot (Human)
Match: HEMK2 (HemK methyltransferase family member 2 OS=Homo sapiens GN=N6AMT1 PE=1 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 1.772e-50
Identity = 95/210 (45.24%), Postives = 131/210 (62.38%), Query Frame = 2 
Query:  185 NLPTPAFKSLTQEDLEKVYEPAEDTFLLIDSLERDRLLIQNKRPCIALELGPGSGIVITFLAKHITPGICCFASDINFHASYCTRKTSLENKVTVEVTTDYLVGSFCKRMRKNIDVLIFNPPYVVTPSSEVGSKDLLASWAGGVDGREVIDKFLPIVPELLSEEGCFYLLLLEQNKPDEIVEVMKDKYNLQASLVLERKTGPEYLKVFRF 814
            N  TP    + +     VYEPAEDTFLL+D+LE     +     C  LE+G GSG+V  FLA  I P      +DIN  A+ CT +T+  NKV ++     LV     R+ + +D+L+FNPPYVVTP  EVGS  + A+WAGG +GREV+D+F P+VP+LLS  G FYL+ +++N P+EI+++MK K  LQ +  L R+ G E L V +F
Sbjct:    5 NFATPFHGHVGRGAFSDVYEPAEDTFLLLDALEAAAAELAGVEIC--LEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQPVITDLVKGLLPRLTEKVDLLVFNPPYVVTPPQEVGSHGIEAAWAGGRNGREVMDRFFPLVPDLLSPRGLFYLVTIKENNPEEILKIMKTK-GLQGTTALSRQAGQETLSVLKF 211
The following BLAST results are available for this feature:
BLAST of TCONS_00010717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HEMK21.772e-5045.24HemK methyltransferase family member 2 OS=Homo sap... [more]
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