TCONS_00010716 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00010716
Unique Name	TCONS_00010716
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2807

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000109:423506..426386+

transcript sequence

>TCONS_00010716 ID=TCONS_00010716|Name=TCONS_00010716|organism=Clytia hemisphaerica|type=transcript|length=2807bp
GACGGGGAGGACTTGAATGTACAATGGAATTCAGAGTGACAGTAGAACAA
AGTAGACAAGAGTTTTTCAGCTCGTGCATATTTATTTCAATCCAtccaaa
taataaagtaaagttacacacaataaacaaacaaatttaaatgTCAATGA
TTCACCTGCGTCCAGGCGTCGCCGCTCACTGCAGTTTATTGCGACTTGGG
TTTTATTGTTAACTCTGCGCGAGAACCCCATAACTCCGCAGTTTACTCCG
TTTGATTCACCACCTGTCTCACCCAGGCACTTCCCAACCTTACGGTCCAG
TCTCTAAACGACTCTGCTTCAGCATTCTTTGTGGATGCACATGGCAGTCA
GACTGGGGTCAACGGGGTCCAATTGTGGAACCAGGCTAACCTAGGTCTGA
TGGCCACGCAATCCGTGATTCCTCAATACGTCTTGTCCGGACAAACGCTT
GCTGAAGAATGTCTGAATTTCTATATCTGGTTGAGATATTTCTATCTCAT
GCATAATGCATATTTACAAACATTCAACAAACAAAATTCTATTTATAAAT
CCCTCATGACAGCAGCCGCGGGCCCAAAACGTTTGGACCCCAAACGACTA
CCCCTTACTAGTTCTAACTTtaaaataacatcaaatttttattttgacaa
aatctcACAAAAAGGGTtaatatatttcaattctacccaaatatttatat
atttatttcaTTCGACAACACACCCATCTTTACACAGAGTATCCATTTCG
TTAAATGATTTTTACTTTTGGTAGAAGACCCAAGCATCTGATCTCATTTG
AGTTCAggttacaatttttttcacgGTGTCCGTCTCTGCCACAGGTCCAA
CAGGTCAAGCCACGCTCCCTGTTACATGGGATGATTTTACAAAAGTTCTT
TTTGTGTCCAGATTCACCACATCTCCAACAAGTTAATGAAACATTCTCAT
TTGTGCCATTTTGATACTTTAATAGGTTGATTTCAATGTCATCTTCGTCG
TCATTTGCTGACTTCGGCTTTCCATTCATCATCCGTTCTATGGCATTCAG
TTTCTCCCATATCTTGGTGAGTTCCAAAGGCTTTTCTCGCTTCAAGGACT
CTTTTAGCTTGACGGCCTTCACTGCTTCGTTGTAGGTCTTAAATTGTTTA
AGACAGACAAAGTCTTGCAAGTCAGGTCTTAATCCAGCCAATAAGAAATC
GAGTTGTCGATTCTCTGGTACTTCAAGTTCAGTAAAGAGGAACTCTAATT
CCTCAAGGTAAGTAAGTAAGGACGAATCTCCCTGCTTGATGCTTGCGTCT
TCTAATAACTTTTTCCTCTGGGGCATCAAACATACTTTCAATTTCCATAA
TTGCTAAGGCAAAAGAGGTCTTGTAGGTTCCATCCATCCGGTGGAAGAAC
ATCTTTGGTCTTTTTTGTAATATGGATGGAAGAGCAGCCAGTTTTTCCTC
TTCAGTCCATTTACCAAGTTTTGTAATGTCTTCAAATTCTTTTAAGAAGG
TTTTGAATGACTTCGATCCGGTCCCATCAAAAGTAGGTAGATCTAAGTGA
GTGATCTTCGGTCGGCTGAGTTTATTTAAAGACTCTACAAACGATGTCTC
TGTTAGAAATGTCTGCTGCTGTATTGGCTTTCGGTCTTTTCGTATAAATG
GTTCACAGTTACCTCCGATTGCTCCTGCTTGATATGGAGGGGATTCAGAT
TCTAAGTGTTCAACTCGAAATCTTAGCTGTTCAATCTCCTCACTGAGCTG
TTTCCCATCGGATCGAATTCTGTCTCGTTCACTCTCCAATAGTTCTTGGT
ATTCGCATGGCGCACTCTTCCTTCTTTGGATATGTCGCTTGTCCACAAAC
GGTGGTGTAGTGCATCCATCGTAACAATTGCTACTAAACATGCTGTTCCA
AATGTCCGATTGAACACCACAGTCACTATGGTAGTGTTTCGGTGGTGTTA
GAAAGGCTCGTTACTACAGGTTCGCAGTACTTGCAGTTGATTGATCCATT
TACAACCGCAGGCAAGTAAGGCAGAACTGTTAGTAATCACTATAAGGTAT
GTTGGAAAGAGGCGTGACCTTTTTCGATGAGCTTTTCAGCTTTCTCTCCT
CATtgactttcttctcttttttttccgtTAAAATTTCTTGCATTCGGTAT
TTAGCATCATTACTTGCGTCAATGATAAATTATTCAAGAAGGTATATAAA
CGATTATTGCATCTTCTGCCTTGAATTATTGATTACTTGATGGTTCATCG
CGAGAACTTTTCGGAGTTGGCTTGATATCAATAATTCAGTTCATTAATCC
TCAGAGTGACAAATGTTTTCGATGTTTCATATGTTCGAAATGACTCAGCT
GTTTAGTCTAAATTAACGACTCATTCTCAATAATAACCATTGAAGTTCAT
GGTAAATGATAGAACGTAGATTTGAGTTTCTTTGAGTGAGTTTAATTTCA
ATAATTCATTAATCTTGGTTAGGTATTCTTGATGTTCTTGCGTGTTCGAG
CTAAGATGACTCAGATTTCGGTACCATTGAATGACTCACTTTTCAATTTA
ATCATTCAAGCTCTCAGATGAATGATCGAATCAACCACCCGTGTCCATTC
AGTGCCAATGACTAATAGTTCATTAATAATTTGATACATTGTTTATTACA
GTAAACCTTCGACGTCATTAGTTTTGTGAGTCAGCTCTTTCGACTTCAAG
AAAGTCTGTCGGATTGTATTCTGCATGtaatttaaccctattagccccaa
gcttttttgacttttgtatccccaggggggggtagaatctaccaccctcg
attattt

Run BLAST on NCBI

transcript from alignment at sc0000109:423506..426386+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00010716 ID=TCONS_00010716|Name=TCONS_00010716|organism=Clytia hemisphaerica|type=transcript|length=2881bp|location=Sequence derived from alignment at sc0000109:423506..426386+ (Clytia hemisphaerica)
GACGGGGAGGACTTGAATGTACAATGGAATTCAGAGTGACAGTAGAACAA
AGTAGACAAGAGTTTTTCAGCTCGTGCATATTTATTTCAATCCAtccaaa
taataaagtaaagttacacacaataaacaaacaaatttaaatgTCAATGA
TTCACCTGCGTCCAGGCGTCGCCGCTCACTGCAGTTTATTGCGACTTGGG
TTTTATTGTTAACTCTGCGCGAGAACCCCATAACTCCGCAGTTTACTCCG
TTTGATTCACCACCTGTCTCACCCAGGCACTTCCCAACCTTACGGTCCAG
TCTCTAAACGACTCTGCTTCAGCATTCTTTGTGGATGCACATGGCAGTCA
GACTGGGGTCAACGGGGTCCAATTGTGGAACCAGGCTAACCTAGGTCTGA
TGGCCACGCAATCCGTGATTCCTCAATACGTCTTGTCCGGACAAACGCTT
GCTGAAGAATGTCTGAATTTCTATATCTGGTTGAGATATTTCTATCTCAT
GCATAATGCATATTTACAAACATTCAACAAACAAAATTCTATTTATAAAT
CCCTCATGACAGCAGCCGCGGGCCCAAAACGTTTGGACCCCAAACGACTA
CCCCTTACTAGTTCTAACTTtaaaataacatcaaatttttattttgacaa
aatctcACAAAAAGGGTtaatatatttcaattctacccaaatatttatat
atttatttcaTTCGACAACACACCCATCTTTACACAGAGTATCCATTTCG
TTAAATGATTTTTACTTTTGGTAGAAGACCCAAGCATCTGATCTCATTTG
AGTTCAggttacaatttttttcacgGTGTCCGTCTCTGCCACAGGTCCAA
CAGGTCAAGCCACGCTCCCTGTTACATGGGATGATTTTACAAAAGTTCTT
TTTGTGTCCAGATTCACCACATCTCCAACAAGTTAATGAAACATTCTCAT
TTGTGCCATTTTGATACTTTAATAGGTTGATTTCAATGTCATCTTCGTCG
TCATTTGCTGACTTCGGCTTTCCATTCATCATCCGTTCTATGGCATTCAG
TTTCTCCCATATCTTGGTGAGTTCCAAAGGCTTTTCTCGCTTCAAGGACT
CTTTTAGCTTGACGGCCTTCACTGCTTCGTTGTAGGTCTTAAATTGTTTA
AGACAGACAAAGTCTTGCAAGTCAGGTCTTAATCCAGCCAATAAGAAATC
GAGTTGTCGATTCTCTGGTACTTCAAGTTCAGTAAAGAGGAACTCTAATT
CCTCAAGGTAAGTAAGTAAGGACGAATCTCCCTGCTTGATGCTTGCGTCT
TCTAATAACTTTTTCCTCTGGGGCATCAAACATACTTTCAATTTCCATAA
TTGCTAAGGCAAAAGAGGTCTTGTAGGTTCCATCCATCCGGTGGAAGAAC
ATCTTTGGTCTTTTTTGTAATATGGATGGAAGAGCAGCCAGTTTTTCCTC
TTCAGTCCATTTACCAAGTTTTGTAATGTCTTCAAATTCTTTTAAGAAGG
TTTTGAATGACTTCGATCCGGTCCCATCAAAAGTAGGTAGATCTAAGTGA
GTGATCTTCGGTCGGCTGAGTTTATTTAAAGACTCTACAAACGATGTCTC
TGTTAGAAATGTCTGCTGCTGTATTGGCTTTCGGTCTTTTCGTATAAATG
GTTCACAGTTACCTCCGATTGCTCCTGCTTGATATGGAGGGGATTCAGAT
TCTAAGTGTTCAACTCGAAATCTTAGCTGTTCAATCTCCTCACTGAGCTG
TTTCCCATCGGATCGAATTCTGTCTCGTTCACTCTCCAATAGTTCTTGGT
ATTCGCATGGCGCACTCTTCCTTCTTTGGATATGTCGCTTGTCCACAAAC
GGTGGTGTAGTGCATCCATCGTAACAATTGCTACTAAACATGCTGTTCCA
AATGTCCGATTGAACACCACAGTCACTATGGTAGTGATTGGTGGTGTNTA
ATTGCTACAAAACATGCTGTTCCAAATGTCCGATTGAACACCACAGTCAC
TATGGTAGTGTTTCGGTGGTGTTAGAAAGGCTCGTTACTACAGGTTCGCA
GTACTTGCAGTTGATTGATCCATTTACAACCGCAGGCAAGTAAGGCAGAA
CTGTTAGTAATCACTATAAGGTATGTTGGAAAGAGGCGTGACCTTTTTCG
ATGAGCTTTTCAGCTTTCTCTCCTCATtgactttcttctcttttttttcc
gtTAAAATTTCTTGCATTCGGTATTTAGCATCATTACTTGCGTCAATGAT
AAATTATTCAAGAAGGTATATAAACGATTATTGCATCTTCTGCCTTGAAT
TATTGATTACTTGATGGTTCATCGCGAGAACTTTTCGGAGTTGGCTTGAT
ATCAATAATTCAGTTCATTAATCCTCAGAGTGACAAATGTTTTCGATGTT
TCATATGTTCGAAATGACTCAGCTGTTTAGTCTAAATTAACGACTCATTC
TCAATAATAACCATTGAAGTTCATGGTAAATGATAGAACGTAGATTTGAG
TTTCTTTGAGTGAGTTTAATTTCAATAATTCATTAATCTTGGTTAGGTAT
TCTTGATGTTCTTGCGTGTTCGAGCTAAGATGACTCAGATTTCGGTACCA
TTGAATGACTCACTTTTCAATTTAATCATTCAAGCTCTCAGATGAATGAT
CGAATCAACCACCCGTGTCCATTCAGTGCCAATGACTAATAGTTCATTAA
TAATTTGATACATTGTTTATTACAGTAAACCTTCGACGTCATTAGTTTTG
TGAGTCAGCTCTTTCGACTTCAAGAAAGTCTGTCGGATTGTATTCTGCAT
Gtaatttaaccctattagccccaagcttttttgacttttgtatccccagg
ggggggtagaatctaccaccctcgattattt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006007	XLOC_006007	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00010716-exon-sc0000109-1491911889:423506..425394	TCONS_00010716-exon-sc0000109-1491911889:423506..425394	Clytia hemisphaerica	exon
TCONS_00010716-exon-sc0000109-1510915933:423506..425394	TCONS_00010716-exon-sc0000109-1510915933:423506..425394	Clytia hemisphaerica	exon
TCONS_00010716-exon-sc0000109-1575043694:423506..425394	TCONS_00010716-exon-sc0000109-1575043694:423506..425394	Clytia hemisphaerica	exon
TCONS_00010716-exon-sc0000109-1491911889:425469..426386	TCONS_00010716-exon-sc0000109-1491911889:425469..426386	Clytia hemisphaerica	exon
TCONS_00010716-exon-sc0000109-1510915933:425469..426386	TCONS_00010716-exon-sc0000109-1510915933:425469..426386	Clytia hemisphaerica	exon
TCONS_00010716-exon-sc0000109-1575043694:425469..426386	TCONS_00010716-exon-sc0000109-1575043694:425469..426386	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000109	supercontig	sc0000109:423506..426386 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249165	0.232005	0.340159	0.534067	1.66666	1.33031	2.02786	2.7926	2.55368	2.02624	2.05489	2.10752	55.157	48.3022	6.58047	5.35201	1.76323	2.18441	4.44715	10.4743	4.16712	4.32076	1.8714	2.21529	3.3264	12.9704	3.11883	2.66609	1.47551	1.48247

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00010716 vs. Swiss-Prot (Human)

BLAST of TCONS_00010716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00010716 (transcript) - C. hemisphaerica