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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010715 ID=TCONS_00010715|Name=TCONS_00010715|organism=Clytia hemisphaerica|type=transcript|length=3117bpRun BLAST on NCBI transcript from alignment at sc0000109:415525..456634+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010715 ID=TCONS_00010715|Name=TCONS_00010715|organism=Clytia hemisphaerica|type=transcript|length=41110bp|location=Sequence derived from alignment at sc0000109:415525..456634+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010715 vs. Swiss-Prot (Human)
Match: E2AK1 (Eukaryotic translation initiation factor 2-alpha kinase 1 OS=Homo sapiens GN=EIF2AK1 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 8.583e-34 Identity = 76/278 (27.34%), Postives = 132/278 (47.48%), Query Frame = 1
Query: 397 IASGGFGKVVKAQNKLDHKFYAIKKIPLVDTDVKKILQTLREVQIFSNLEHTNIVRYHSSWLE--HGVETFLQK--------DVHSNQEKNVRRTNIXXXXXXXXXXXXFIPVIFQQPI-QSHGVFGVGISHLVHPPS--HPPKLLGLPAG---SNDEVNKEP----SDNHIVKKRPTLRFNN---------------NAKLLKMT-------LFIQMELCSRTLRDWLHQRNN---EYNEEIGIGVVEVR---DMARQISSAVHYIHRQGMLHRDMK 1086
+ GG+G+V K +NKLD ++YAIKKI + ++ LREV++ + L+H NIV YH++W+E H ++ + +V S+QE++ + ++ ++ + +IF +P + FG + + S + L+ +G S E+ + S + IV+++ LR N+ N L T L IQM+LC +L DW+ +RN EY +E V + +++ V YIH G++HRD+K
Sbjct: 173 LGKGGYGRVYKVRNKLDGQYYAIKKILIKGATKTVCMKVLREVKVLAGLQHPNIVGYHTAWIEHVHVIQPRADRAAIELPSLEVLSDQEEDREQCGVKNDESSSSS------IIFAEPTPEKEKRFGESDTENQNNKSVKYTTNLVIRESGELESTLELQENGLAGLSASSIVEQQLPLRRNSHLEESFTSTEESSEENVNFLGQTEAQYHLMLHIQMQLCELSLWDWIVERNKRGREYVDESACPYVMANVATKIFQELVEGVFYIHNMGIVHRDLK 444 HSP 2 Score: 81.6481 bits (200), Expect = 8.583e-34 Identity = 62/186 (33.33%), Postives = 93/186 (50.00%), Query Frame = 3
Query: 1080 HEGTLPENVFLTYTAKQLTIKVGDFGLARYQPSPSNEPLSPVVDGNAPLFNFGNTE---HTIGVGTATYAAPEQLKEPFYTNKVDIWSLGIILYEMYKPFCTEMERGRSIQNLLYKRELADELSTKWQEECELILKMTSLQPRDRPEASYLLKF-FTQNPEKKSLSELEKTIKLQREIIEGLRRQL 1625
H P N+FL +Q +K+GDFGLA + ++ N N HT VGT YA+PEQL+ Y K D++SLG++L E+++PF TEMER + L +L + L + + + I +T RP A LL+ QN +L+ K I+ ++EI E L++QL
Sbjct: 440 HRDLKPRNIFLHGPDQQ--VKIGDFGLA----------CTDILQKNTDWTNRNGKRTPTHTSRVGTCLYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTG-LRTGQLPESLRKRCPVQAKYIQHLTRRNSSQRPSAIQLLQSELFQNSGNVNLTLQMKIIEQEKEIAE-LKKQL 611 The following BLAST results are available for this feature:
BLAST of TCONS_00010715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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