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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010708 ID=TCONS_00010708|Name=TCONS_00010708|organism=Clytia hemisphaerica|type=transcript|length=1600bp
CTTAAATCTGTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCAC
ATGTTATATTGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGC
TGTCGGAAAAGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAG
AGATCGGCACCATGATGCAAACCAATGTACTTATAACCAAAATAACACAG
TGAATTTTTTATGTTGGCAAGGAATACCTGAGGTGGAAACCAGTCACTGT
TCAGCTTTAAATTGTGCGCCTGGTTTCTACAGATCGTATAAAAAAATCGA
ACatggTTTCTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAAT
CCGACTTTGGAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATA
GACAACGGAGAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGT
CAGCTATCAGTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTG
GATCATTGACTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAAC
ACACCTATTGTTACGACgtcaaatttcaaagtttcaagTTTGCATATATC
TATTCAGGCAGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATC
ATAATTGCGTTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGAC
ATTGGTATTGTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTG
CAAGGTAAAACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGA
TTTTGACTGTTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTC
TGCCTTTATCAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGG
AATGACAAGAGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAA
TGATCGCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGA
GGACGGCATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTAC
CACAATCATATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTT
TTCAAAGGCCAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTC
AATACCATGGTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTAT
TCTGTTTCATCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTT
TGACAGAGATGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAGCGA
ACATGTTAGTTATGAAACACTTAAGTATTATTTAATCATTATtcctaaaa
aattaattaacaaaAACGCTTCCTAAAAACTAACGAAAAATTGGACTGAA
CAGTGTAGTGATGAATTGAATCGGATGTATGTCCCAATATGTTTAGCAGT
GGAAGCAAGAGTGGCTACATCTTTCATTGGAACAACATTTTTTACCATAT
TTGAAAAATAGCTTTTTGAGCCTACCTGGGGTCGGGGGTCATGTTCAATC
AATATTTAATTATATTTAAAAGataaaacaattttcatttCTGAAATATA Run BLAST on NCBI protein sequence of TCONS_00010708-protein >TCONS_00010708-protein ID=TCONS_00010708-protein|Name=TCONS_00010708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
LNLWKSIRNLLKWHSAHVILSDTRIPLNQTSRGCRKSTIREERYGYVLMR
DRHHDANQCTYNQNNTVNFLCWQGIPEVETSHCSALNCAPGFYRSYKKIE
HGFSWICVRCQKNHHKSDFGNHLCYPCEGRLSIDNGERTACVDPYTNIFV
SYQSKEFYIIGVISMVGSLTAILTLIIFIIKRNTPIVTTSNFKVSSLHIS
IQAVTMITAPILYFMNHNCVSKPLVLTTLYTFDIGIVFIKSQKLLQAFLC
KVKLTAEEDKRTVMAQILTVVIFLVSVNAVFFVCLYQQQVTILEFEDPQG
MTREYACNTYFHSNAIMIAIAVIQLMCTIQAFRGRHLPSVMNDGVVLMFT
TIILTASFVVCFIIVPFQRPTEKEISQCMAILVNTMVITFLMYGLKAYRI
LFHPEQNTRVYFRNQCLTEMRQDVNQRIEMR Run BLAST on NCBI transcript from alignment at sc0000109:369077..370972+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010708 ID=TCONS_00010708|Name=TCONS_00010708|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at sc0000109:369077..370972+ (Clytia hemisphaerica)
CTTAAATCTGTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCAC
ATGTTATATTGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGC
TGTCGGAAAAGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAG
AGATCGGCACCATGATGCAAACCAATGTACTTATAACCAAAATAACACAG
TGAATTTTTTATGTTGGCAAGGTGATgagactttttttttgttttttatt
cttttattttctaacATCGGGATATTTCATAGAAATTTATTACAACTAGT
CCCGGTTATTTAATGTAACTGCGCTTTAATGAGATtgttatttatgattt
atttttaaagtcaATCGCCTGAAAGTTAGAGGAGAGGTCTTAAGGGTAAA
AAGATCTAGtataaatattgaatttttaatTACTCTAATTAATTAATGTT
ATAGGAATACCTGAGGTGGAAACCAGTCACTGTTCAGCTTTAAATTGTGC
GCCTGGTTTCTACAGATCGTATAAAAAAATCGAACATGGTTTCTCTTTGA
TATGCGTTCGTTGCCAGAAGAACCATCACAANtatgaaaaaattgaacat
ggTTTCTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAATCCGA
CTTTGGAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATAGACA
ACGGAGAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGTCAGC
TATCAGTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTGGATC
ATTGACTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAACACAC
CTATTGTTACGACgtcaaatttcaaagtttcaagTTTGCATATATCTATT
CAGGCAGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATCATAA
TTGCGTTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGACATTG
GTATTGTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTGCAAG
GTAAAACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGATTTT
GACTGTTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTCTGCC
TTTATCAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGGAATG
ACAAGAGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAATGAT
CGCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGAC
GGCATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCACA
ATCATATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCA
AAGGCCAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTCAATA
CCATGGTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTATTCTG
TTTCATCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTTTGAC
AGAGATGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAGCGAACAT
GTTAGTTATGAAACACTTAAGTATTATTTAATCATTATtcctaaaaaatt
aattaacaaaAACGCTTCCTAAAAACTAACGAAAAATTGGACTGAACAGT
GTAGTGATGAATTGAATCGGATGTATGTCCCAATATGTTTAGCAGTGGAA
GCAAGAGTGGCTACATCTTTCATTGGAACAACATTTTTTACCATATTTGA
AAAATAGCTTTTTGAGCCTACCTGGGGTCGGGGGTCATGTTCAATCAATA
TTTAATTATATTTAAAAGataaaacaattttcatttCTGAAATATA Coding sequence (CDS) from alignment at sc0000109:369077..370972+ >TCONS_00010708 ID=TCONS_00010708|Name=TCONS_00010708|organism=Clytia hemisphaerica|type=CDS|length=3888bp|location=Sequence derived from alignment at sc0000109:369077..370972+ (Clytia hemisphaerica)
TTAAATCTGTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCACA
TGTTATATTGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGCT
GTCGGAAAAGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAGA
GATCGGCACCATGATGCAAACCAATGTACTTATAACCAAAATAACACAGT
GAATTTTTTATGTTGGCAAGGAATACCTGAGGTGGAAACCAGTCACTGTT
CAGCTTTAAATTGTGCGCCTGGTTTCTACAGATCGTATAAAAAAATCGAA
CatggTTTCTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAATC
CGACTTTGGAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATAG
ACAACGGAGAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGTC
AGCTATCAGTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTGG
ATCATTGACTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAACA
CACCTATTGTTACGACgtcaaatttcaaagtttcaagTTTGCATATATCT
ATTCAGGCAGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATCA
TAATTGCGTTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGACA
TTGGTATTGTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTGC
AAGGTAAAACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGAT
TTTGACTGTTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTCT
GCCTTTATCAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGGA
ATGACAAGAGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAAT
GATCGCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAG
GACGGCATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACC
ACAATCATATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTTT
TCAAAGGCCAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTCA
ATACCATGGTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTATT
CTGTTTCATCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTTT
GACAGAGATGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAGTTAA
ATCTGTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCACATGTT
ATATTGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGCTGTCG
GAAAAGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAGAGATC
GGCACCATGATGCAAACCAATGTACTTATAACCAAAATAACACAGTGAAT
TTTTTATGTTGGCAAGGAATACCTGAGGTGGAAACCAGTCACTGTTCAGC
TTTAAATTGTGCGCCTGGTTTCTACAGATCGTATAAAAAAATCGAACatg
gTTTCTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAATCCGAC
TTTGGAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATAGACAA
CGGAGAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGTCAGCT
ATCAGTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTGGATCA
TTGACTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAACACACC
TATTGTTACGACgtcaaatttcaaagtttcaagTTTGCATATATCTATTC
AGGCAGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATCATAAT
TGCGTTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGACATTGG
TATTGTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTGCAAGG
TAAAACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGATTTTG
ACTGTTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTCTGCCT
TTATCAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGGAATGA
CAAGAGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAATGATC
GCAATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGACG
GCATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCACAA
TCATATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCAA
AGGCCAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTCAATAC
CATGGTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTATTCTGT
TTCATCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTTTGACA
GAGATGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAGTTAAATCT
GTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCACATGTTATAT
TGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGCTGTCGGAAA
AGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAGAGATCGGCA
CCATGATGCAAACCAATGTACTTATAACCAAAATAACACAGTGAATTTTT
TATGTTGGCAAGGAATACCTGAGGTGGAAACCAGTCACTGTTCAGCTTTA
AATTGTGCGCCTGGTTTCTACAGATCGTATAAAAAAATCGAACatggTTT
CTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAATCCGACTTTG
GAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATAGACAACGGA
GAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGTCAGCTATCA
GTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTGGATCATTGA
CTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAACACACCTATT
GTTACGACgtcaaatttcaaagtttcaagTTTGCATATATCTATTCAGGC
AGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATCATAATTGCG
TTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGACATTGGTATT
GTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTGCAAGGTAAA
ACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGATTTTGACTG
TTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTCTGCCTTTAT
CAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGGAATGACAAG
AGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAATGATCGCAA
TTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGACGGCAT
CTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCACAATCAT
ATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCAAAGGC
CAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTCAATACCATG
GTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTATTCTGTTTCA
TCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTTTGACAGAGA
TGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010708-exon-sc0000109-1491911889:369077..369297 | TCONS_00010708-exon-sc0000109-1491911889:369077..369297 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1510915933:369077..369297 | TCONS_00010708-exon-sc0000109-1510915933:369077..369297 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1575043694:369077..369297 | TCONS_00010708-exon-sc0000109-1575043694:369077..369297 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1491911889:369531..369611 | TCONS_00010708-exon-sc0000109-1491911889:369531..369611 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1510915933:369531..369611 | TCONS_00010708-exon-sc0000109-1510915933:369531..369611 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1575043694:369531..369611 | TCONS_00010708-exon-sc0000109-1575043694:369531..369611 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1491911889:369675..370972 | TCONS_00010708-exon-sc0000109-1491911889:369675..370972 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1510915933:369675..370972 | TCONS_00010708-exon-sc0000109-1510915933:369675..370972 | Clytia hemisphaerica | exon |
| TCONS_00010708-exon-sc0000109-1575043694:369675..370972 | TCONS_00010708-exon-sc0000109-1575043694:369675..370972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:369077..370972 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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