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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010707 ID=TCONS_00010707|Name=TCONS_00010707|organism=Clytia hemisphaerica|type=transcript|length=1331bp
CTGGTTTCTACAGATCGTATAAAAAAATCGAACatggTTTCTCTTGGATA
TGCGTTCGTTGCCAGAAGAACCATCACAAATCCGACTTTGGAAACCATTT
ATGTTATCCATGTGAAGGACGATTGTCGATAGACAACGGAGAAAGAACGG
CGTGTGTGGATCCTTACACAAATATTTTCGTCAGCTATCAGTCAAAAGAA
TTCTACATCATTGGAGTTATCTCAATGGTTGGATCATTGACTGCCATACT
AACTTTGATAATCTTCATAATCAAAAGAAACACACCTATTGTTACGACgt
caaatttcaaagtttcaagTTTGCATATATCTATTCAGGCAGTTACAATG
ATCACCGCCCCAATTTTATACTTTATGAATCATAATTGCGTTTCGAAACC
ATTAGTTTTAACTACCTTATACACCTTTGACATTGGTATTGTTTTTATCA
AGTCACAAAAGCTTCTACAAGCATTTCTTTGCAAGGTAAAACTTACAGCC
GAAGAAGACAAACGCACAGTAATGGCTCAGATTTTGACTGTTGTCATTTT
TCTAGTCTCCGTCAACGCTGTATTCTTCGTCTGCCTTTATCAACAACAAG
TAACCATTCTTGAATTCGAGGATCCTCAGGGAATGACAAGAGAGTATGCA
TGCAATACCTATTTTCACAGCAATGCTATAATGATCGCAATTGCAGTAAT
CCAACTAATGTGCACGATACAAGCTTTTCGAGGACGGCATCTTCCGAGTG
TCATGAACGACGGTGTCGTTTTGATGTTTACCACAATCATATTGACCGCT
TCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCAAAGGCCAACGGAGAA
AGAAATTTCACAATGTATGGCGATTTTAGTCAATACCATGGTCATTACAT
TCCTCATGTACGGTCTAAAGGCTTACCGTATTCTGTTTCATCCGGAACAA
AACACAAGAGTGTATTTCCGCAATCAGTGTTTGACAGAGATGAGACAAGA
CGTCAATCAAAGAATCGAGATGAGATAGCGAACATGTTAGTTATGAAACA
CTTAAGTATTATTTAATCATTATtcctaaaaaattaattaacaaaAACGC
TTCCTAAAAACTAACGAAAAATTGGACTGAACAGTGTAGTGATGAATTGA
ATCGGATGTATGTCCCAATATGTTTAGCAGTGGAAGCAAGAGTGGCTACA
TCTTTCATTGGAACAACATTTTTTACCATATTTGAAAAATAGCTTTTTGA
GCCTACCTGGGGTCGGGGGTCATGTTCAATCAATATTTAATTATATTTAA
AAGataaaacaattttcatttCTGAAATATA Run BLAST on NCBI transcript from alignment at sc0000109:368030..370972+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010707 ID=TCONS_00010707|Name=TCONS_00010707|organism=Clytia hemisphaerica|type=transcript|length=2943bp|location=Sequence derived from alignment at sc0000109:368030..370972+ (Clytia hemisphaerica)
CTGGTTTCTACAGATCGTATAAAAAAATCGAACATGGTTTCTCTTTGATA
TGCGTTCGTTGCCAGANGGCTGAATTTTACATATCACGACACAATTCAAC
GGATGAAAGGAGTATAAAGCAACATGAAtagttttatgattttgatatta
tttgtTTTCCCCTCCATCAAACCACGGTTACAATGCGACAATGATGATCA
ATATCAATGGTATGTGATTGGTATTTATTCTGCATGCTATAATGAAACAA
ACCGAACAGAACTTCATCACCTCGCTGAAGCTTTAGACAAAAGTATCAAG
TTCATGTGGGAACATGGAATATACGACCGTCTTAACTATAAATACATTTC
AATAGATGTTTGTGATGATTTTAATAATCTTCCAAAAATCGTTGAATCTA
TATACTTGAATGAATCACTTTATTACAATACGTGGTCTGAAAAGCTGAAC
AAATCATACAGCTTATCATCGGTCATTGCAATATACGCAGAAGGACCAGC
AGAGATGATGAATTATCTGGACGCTAGTTTTCATGATGACATCAGGTTTA
CAGGAAGATACGTCTCTTACAATTCTTCTTTTGACTATGAGCAATACGAG
ATGTACGCTACTATTCTCCATTATATAATCACGCATCGTTTAGAATTGGA
CCATCTCGTTATATTTAAAGTTCAACCGTTCACGATGAAccctctttttg
aaattttaaaatataaagccCTGCAATCAAAACTTTGTATCCATTGGAAA
GAAATTGACAAGTCTTGGAATATAAATCAGGAAGATCACTTCTCTCCAAG
ATGGTTCAAGGAAAACAAACCAGCAGTGCTTACTATGGGTGATAAATATG
GACAAGTTTCAATCGCCAAACAATTAGGAATATTAatggaaaaggaaaat
ttgacaATTCCGATATTGGTTGAAGGGTTTGTGAGTAGTATTAGAAAAAA
TAGTTTGTATActccagaaaattttgattgctttaaaaatatcaactctT
CAATCATAACTATAGATTCTGAACTTTTCTATGCTTTGGAAAGCNAACTT
AAATCTGTGGAAAAGCATTCGAAACCTATTGAAATGGCACTCTGCACATG
TTATATTGTCAGACACAAGGATACCATTAAACCAGACTTCTAGAGGCTGT
CGGAAAAGTACTATTAGGGAAGAACGTTATGGATACGTTTTAATGAGAGA
TCGGCACCATGATGCAAACCAATGTACTTATAACCAAAATAACACAGTGA
ATTTTTTATGTTGGCAAGGTGATgagactttttttttgttttttattctt
ttattttctaacATCGGGATATTTCATAGAAATTTATTACAACTAGTCCC
GGTTATTTAATGTAACTGCGCTTTAATGAGATtgttatttatgatttatt
tttaaagtcaATCGCCTGAAAGTTAGAGGAGAGGTCTTAAGGGTAAAAAG
ATCTAGtataaatattgaatttttaatTACTCTAATTAATTAATGTTATA
GGAATACCTGAGGTGGAAACCAGTCACTGTTCAGCTTTAAATTGTGCGCC
TGGTTTCTACAGATCGTATAAAAAAATCGAACATGGTTTCTCTTTGATAT
GCGTTCGTTGCCAGAAGAACCATCACAANtatgaaaaaattgaacatggT
TTCTCTTGGATATGCGTTCGTTGCCAGAAGAACCATCACAAATCCGACTT
TGGAAACCATTTATGTTATCCATGTGAAGGACGATTGTCGATAGACAACG
GAGAAAGAACGGCGTGTGTGGATCCTTACACAAATATTTTCGTCAGCTAT
CAGTCAAAAGAATTCTACATCATTGGAGTTATCTCAATGGTTGGATCATT
GACTGCCATACTAACTTTGATAATCTTCATAATCAAAAGAAACACACCTA
TTGTTACGACgtcaaatttcaaagtttcaagTTTGCATATATCTATTCAG
GCAGTTACAATGATCACCGCCCCAATTTTATACTTTATGAATCATAATTG
CGTTTCGAAACCATTAGTTTTAACTACCTTATACACCTTTGACATTGGTA
TTGTTTTTATCAAGTCACAAAAGCTTCTACAAGCATTTCTTTGCAAGGTA
AAACTTACAGCCGAAGAAGACAAACGCACAGTAATGGCTCAGATTTTGAC
TGTTGTCATTTTTCTAGTCTCCGTCAACGCTGTATTCTTCGTCTGCCTTT
ATCAACAACAAGTAACCATTCTTGAATTCGAGGATCCTCAGGGAATGACA
AGAGAGTATGCATGCAATACCTATTTTCACAGCAATGCTATAATGATCGC
AATTGCAGTAATCCAACTAATGTGCACGATACAAGCTTTTCGAGGACGGC
ATCTTCCGAGTGTCATGAACGACGGTGTCGTTTTGATGTTTACCACAATC
ATATTGACCGCTTCATTTGTTGTTTGCTTCATCATCGTTCCTTTTCAAAG
GCCAACGGAGAAAGAAATTTCACAATGTATGGCGATTTTAGTCAATACCA
TGGTCATTACATTCCTCATGTACGGTCTAAAGGCTTACCGTATTCTGTTT
CATCCGGAACAAAACACAAGAGTGTATTTCCGCAATCAGTGTTTGACAGA
GATGAGACAAGACGTCAATCAAAGAATCGAGATGAGATAGCGAACATGTT
AGTTATGAAACACTTAAGTATTATTTAATCATTATtcctaaaaaattaat
taacaaaAACGCTTCCTAAAAACTAACGAAAAATTGGACTGAACAGTGTA
GTGATGAATTGAATCGGATGTATGTCCCAATATGTTTAGCAGTGGAAGCA
AGAGTGGCTACATCTTTCATTGGAACAACATTTTTTACCATATTTGAAAA
ATAGCTTTTTGAGCCTACCTGGGGTCGGGGGTCATGTTCAATCAATATTT
AATTATATTTAAAAGataaaacaattttcatttCTGAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010707-exon-sc0000109-1491911889:368030..368062 | TCONS_00010707-exon-sc0000109-1491911889:368030..368062 | Clytia hemisphaerica | exon |
| TCONS_00010707-exon-sc0000109-1510915933:368030..368062 | TCONS_00010707-exon-sc0000109-1510915933:368030..368062 | Clytia hemisphaerica | exon |
| TCONS_00010707-exon-sc0000109-1575043694:368030..368062 | TCONS_00010707-exon-sc0000109-1575043694:368030..368062 | Clytia hemisphaerica | exon |
| TCONS_00010707-exon-sc0000109-1491911889:369675..370972 | TCONS_00010707-exon-sc0000109-1491911889:369675..370972 | Clytia hemisphaerica | exon |
| TCONS_00010707-exon-sc0000109-1510915933:369675..370972 | TCONS_00010707-exon-sc0000109-1510915933:369675..370972 | Clytia hemisphaerica | exon |
| TCONS_00010707-exon-sc0000109-1575043694:369675..370972 | TCONS_00010707-exon-sc0000109-1575043694:369675..370972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:368030..370972 + |
Blast
The following BLAST results are available for this feature:
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