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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010702 ID=TCONS_00010702|Name=TCONS_00010702|organism=Clytia hemisphaerica|type=transcript|length=584bp
TCTTCAATCatcaatttctgaaatctgaagAACTTGACAATCTCAAAACA
ACAAGATGAAGTGTATCATTGCTTTCGCTCTTATCGCTGCTGCTGCAGCC
ATCACCAACCCACCCATCACTGGAACCACACCACCAGCTGTCCCATGCCC
AGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACTTCT
ATGGCCAATACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCT
TACTGTCAAGCTTGCTTTCCTCTTTCCTTGGAATTCAGTCAAACTTGCAA
CCAATGTTTGTACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGC
CCCCAGCCACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCA
CACTTCAGTGGAAACGTTGAAGACCCAAGCAATGACCGTCAATACGTTGC
TTGCTGGAAGGGAGTCACTGTCGGATGTATTGCTTGCCCAGGAAACTTGA
AATTCAACCAAAAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTCACC
GAGCCATCTCATTAAAcgatgaaaaactgaaaac Run BLAST on NCBI protein sequence of TCONS_00010702-protein >TCONS_00010702-protein ID=TCONS_00010702-protein|Name=TCONS_00010702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MKCIIAFALIAAAAAITNPPITGTTPPAVPCPDSLCKGKADGNFEYYFYG
QYRRNYFVQCSNGLAYCQACFPLSLEFSQTCNQCLYSKNDDCVTTQKWPP
ATTFSCPDKCPHYGPHFSGNVEDPSNDRQYVACWKGVTVGCIACPGNLKF
NQKENACLYEGKYLTEPSH Run BLAST on NCBI transcript from alignment at sc0000109:241465..246791+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010702 ID=TCONS_00010702|Name=TCONS_00010702|organism=Clytia hemisphaerica|type=transcript|length=5327bp|location=Sequence derived from alignment at sc0000109:241465..246791+ (Clytia hemisphaerica)
TCTTCAATCatcaatttctgaaatctgaagAACTTGACAATCTCAAAACA
ACAAGATGAAGTGTATCATTGCTTTCGCTCTTATCGCTGGTAAGTTTTAT
TGCAATGCTTCAATGTTTACAACGattgtcattttgaaatcattttcaat
ttcttcaacTTCACCTCACGAAAATCAGTCcaacaatcaaacaaagttgC
TTGCCGAGATTTTTTAAGACCTTTATagaactttcaaataaaaacagaaG
ATGATCTATATTTTTAAACAttcattttatttcaatcttttaGCTGCTGC
AGCCATCACCAACCCACCCATTACTGGAACTACACCACCAGCTGTCCCAT
GCCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTAC
TTCTATGGCCAATACAGACGTAACTACTTTGTCCAATGCTCAAACGGATT
AGCTTACTGTCAAGCTTGCTTCCCTCTCTCTTTGGAATTCAGTCAAACTT
GCAACCAATGTTTGTACAACAAAAACGATGACTGTGTCACCACACAAAAA
TGGCACCCAGCCACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGG
ACCACACTTCAGTGGAAACGTTGAAGACCCAAGCAATGACCGTCAATACG
TTGCTTGCTGGAAGGGAGTCACTGTCGGATGTATTGCTTGCCCAGGAAAC
TTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAAGGCAAATACCT
CACCGAGCCATCTCATTAAAcgatgaaaaactgaaaacaatcgaaccaaa
aacgaaaaacaaacTTTGTAATTTAATTTACTTATTTCATAGGGGAATCC
TTTATTTAAGAATTTATTAATACAATACACTATATCAAGCTTACGCTTGA
CACTGAATCCATATTTGTCCATACTTTTCCACCACAAACTCCAAATCTGG
CTTCTGTTGTATCTCAGAGTTTTCTATTCCTTTAAATGAATTTATACATA
TATAAGAAATTGGCCTCTATGACGGGAAAGTTTAAAAGCTCGCCAAATTA
CAGTACTCATCAAAATCAAGACAATTCGTTCATCACATAAATATAGCGAA
AAATCACACATTTACTCAATCTCCAGAAAACCTGGATCACGCAAAATAAA
TTGCAATCACACCACCTTTAGAGTAATTACAAGAGAGGCCTCATAAAACT
ATTTGCCAGAAAATCTCATTGGTGAACTAGAAACTCAAAATTGTTGACTT
TTCGTCTTTTGGATTTGTCTCTACTACTCAGCTTTATAAACACTGGACAA
AGTTTCTCAATATCGGTCAACCAAAATATTTGATCACAGTTATTTTGATA
GTGGTACACTAATGGTAACACTACTCGGTAGCGGTGTACATGTATCGAAA
GCGCTAGCTCTACTTTTCCcgaaatacttttgatgatgtaccGTCTCGTT
AAACATTAATATTAAACATTGCAATGTCTTGAGGGAACTACTCATTGAGT
TTGAGGCATCAAAGGGACTAGAggtgaatcttcaacctttctcaggcaat
aaaaagtgaagccttaaggtTTGCAACGTAATTAGAATGACGGGTTAaat
ctagcactttctttgttttgaagcAGCATATTTTTCGATGatgcttcatt
tcccatccaggagatGGGATTCACAAAGCGCTTTTTCAAAGGAAGTAATA
ACAGAAGGCTTGTATGtacttaaagtctattcacgataagtgtgcactct
ttaattttcttttacctataacttttaaaggaattcttcaatcttttctt
cttcgttttcatcttcatttttagaattttttaaaagattttttgattcc
aaattgttccactcactgctatctttccaatgataccaaatttctaaaga
ttgaagaattccttcaaaagttataggtaaaagaaaaaagagtgcacact
tatcgtgaatagactttaataacCAATTATTTTGCCATGCTTGCGTTTAT
CTTTTTCAGTGTTGCTACCAGGTAAGGCAGCGGAGGTTGTTGCTTTgacc
ccccaataatttttgtgaaaagtgcttttttctttttttatcagattggt
ttttcatgtattttcctcaaaaaaattCGTTTTGAGTACATTTTTCCGGA
CATCTTAAACttaataacacccctgtctcacagccccgatggaACTTTTT
CTCCCAGTTTGgataaaaaatttctattgaaatccaaATAGGGATATAAA
TTATGTTGTTCCAAACTCGAAAATTCCAGGGGGTATGGCTTTGGAGAGCA
ATTTTTAACAATGAATTTCAAATTGGGGATCTCACTGGGACGAAATCTTG
ATCAAATTTTGGATTGAAGTAGGGGCCAAACCAGAAATGTGACAAAGGAG
TGTTTAATGAGAAGGTGAGGAGGGTGATCAATTGGTCTTACTCCAGTATT
ATTATATTCAGCAGAACTTGTTTGAATCGATTCGGAGCTTGTAGCTCACA
ACCTTTATTATATTGAGCAGAACGTGTTTGAATCGATTCGGAGCTTGTAG
CTCACAACTTTTATTATCATATTGAGGAGAACGTGTTTGGATCGATTCTG
AGCTTGAAGCTCACAAAGTTATCAATATTGAGCGGAATGCATTTGAATCA
ATTTGGAGTTTGTAGCACGAACTGCTTAATGTAGAATACAAGTGAAATGA
AAGTGCACAGTAAGAAATTTAATAATTATCTTTACCCTACGATTctgctt
tcaaaataaaaactgcAGTTATTTAGGAAATCCTTGATGGGACTGGTCtc
attaaattttgttaaaatgtttCATTAGCCCTTATGAAAACATTATCTTT
ACAAATGATATTGCTTTACAAAAAAACTAGGATTCCGCAACTCTTTGAAT
ATTCTAAATCTGTCTAGACTTGTTATCTTGGTGTTAGGTGCGGTAAGATC
CACCAGAAATCCAGCAATAAAGAATGCCGCTTCCTTCTACTCTTAATCCA
TGAAGATCATCTGAAGTAATTATCAGATTTTAAACAAAGTGTAATGAAGT
CGAGATGAATTTCAGAAATGATCAATACGAGAGATACAATATGATTGTTG
AAGGATATAAAATCGGAACCATCCTTTTCTCAGTCAGAGACGGTTTGAAA
TAGACATCCCAGTTGGGAATAGACTGTTACATTTTATTCTTTATTGCAAA
AGTACATCAAAAACTtgtcttttggaaattttctgaaCTTTGAAGCAGAG
CCTCAACTTGCACTGTAATTTATTTTACCCTGTTTGATTATTCATATAGG
CTCTGACTCCATATACATaccttttgaaatactttcttaATGTTATGGCG
ATGAAAAATACTTGGAATTTAAATTATTATATAAAGCCAGATCAAAGAAC
GAGGATATCATTCTTTTCTCAGGCACTAGATTTATAAATTTCGTTTCTTG
TGGTTGAAACCCAACAAAAgaagggggcgtacggggtttgcgatttcagA
AATACCGaataaatttgccaaaatttccgaaattcctttaaaaaaatact
tgcaattctgATACCAATTTTTTGGGGCATTTTTCCTCGTTCTGActgat
ttttcatcaaatttgatttttcatgtatgaattccgaaaataggggataa
aaacttaataataccgaaatttcgaagcaaaaattcatggatttccaata
ccaaaacaatttcaaatatCCGCAATACGGAAGGAATTTTgtctgatttc
cgaaattccgaagaaaaaagggtcgatttccgctaTTCCGAAAAACCGTA
CGCCCTTCACAAAAGAACTATACCAAGTTTATGTCATAAAGGTgtgcagt
gtttttattttaattttacaaGAGGTTCATTTCTTTTACTTTCTTGGACg
aattttaaaaaacaaatcagAGGAAAAATATTCGcgtaaatatctttcca
acaacgATACAAAACTTTTTATCTTACGTACAACTAATTATTGGTCAAAA
ATAAAAGCACTGCGCACCTTCTTGAAACTGGCTTTAGTCAAAGAACTTTT
TTCGCTTCTTCATTGATTTACGACTTTATTATCACTTTAAGCAGAGAGAC
GTGTTATTATGAAACATAGAAGAAGTAATTTCCCTTCTTTATAATCACAT
AAAAAGTTAAGAGgaaaattctataaaaagacAAAAGCTTTTCATTATGA
CAATCATAAAAAAGGAAATCTAAATACAtcacaaaacattaaaaaaaaca
aaatgttgaTATCTTCAAATGGAATGAATCCAGCTTTAAAAACATTCTTT
CAGAATTATAGGTAAATCACGAAAGCAATATCAATTAAAAATTGTAACTA
CGGAAGTTGCTGATGACCAGCAGGTTGCAACAAATCTGATTGTTTGTTGT
ATGCAAAAAATAACAAGCTAATTAGATATCAAGTCACTTCCTTAAAAATT
CTTTAGAACAATAGACAGTGTTACAAACACTAATTACAATGGCATTTTAA
TAAGAAAGGGTTTGACTATAAAAGGTGGGGCATGAGACATCTTCAATCat
caatttctgaaatctgaagAACTTGACAATCTCAAAACAACAAGATGAAG
TGTATCATTGCTTTCGCTCTTATTGCTGGTAAGTTTTATTGCAATGCTAT
AATGTTTACAACgattgtcattttgaaattattttcaatttcttcaacTT
GACTTCACGAAAAGCAGTCcaacaatcaaacaaagttgCTTGCCGAGATT
TCTTGAGAACTTTCTagaactttcaaataaaatcagAAGATGATCAATAT
TTCTAAACATTcattttcattcaatcttttaGCTGCTGCAGCCATCACCA
ACCCACCCATCACTGGAACCACACCACCAGCTGTCCCATGCCCAGACTCC
CTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACTTCTATGGCCA
ATACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCTTACTGTC
AAGCTTGCTTTCCTCTTTCCTTGGAATTCAGTCAAACTTGCAACCAATGT
TTGTACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCCCCCAGC
CACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCACACTTCA
GTGGAAACGTTGAAGACCCAAGCAATGACCGTCAATACGTTGCTTGCTGG
AAGGGAGTCACTGTCGGATGTATTGCTTGCCCAGGAAACTTGAAATTCAA
CCAAAAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCCAT
CTCATTAAAcgatgaaaaactgaaaac Coding sequence (CDS) from alignment at sc0000109:241465..246791+ >TCONS_00010702 ID=TCONS_00010702|Name=TCONS_00010702|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0000109:241465..246791+ (Clytia hemisphaerica)
ATGAAGTGTATCATTGCTTTCGCTCTTATCGCTGCTGCTGCAGCCATCAC
CAACCCACCCATCACTGGAACCACACCACCAGCTGTCCCATGCCCAGACT
CCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTACTTCTATGGC
CAATACAGACGTAACTACTTTGTCCAATGCTCCAACGGATTAGCTTACTG
TCAAGCTTGCTTTCCTCTTTCCTTGGAATTCAGTCAAACTTGCAACCAAT
GTTTGTACAGCAAAAACGACGACTGTGTCACCACACAAAAATGGCCCCCA
GCCACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACGGACCACACTT
CAGTGGAAACGTTGAAGACCCAAGCAATGACCGTCAATACGTTGCTTGCT
GGAAGGGAGTCACTGTCGGATGTATTGCTTGCCCAGGAAACTTGAAATTC
AACCAAAAAGAAAATGCTTGCTTGTACGAAGGCAAATACCTCACCGAGCC
ATCTCATTAAATGAAGTGTATCATTGCTTTCGCTCTTATCGCTGCTGCTG
CAGCCATCACCAACCCACCCATCACTGGAACCACACCACCAGCTGTCCCA
TGCCCAGACTCCCTCTGCAAAGGAAAAGCTGACGGAAACTTCGAATACTA
CTTCTATGGCCAATACAGACGTAACTACTTTGTCCAATGCTCCAACGGAT
TAGCTTACTGTCAAGCTTGCTTTCCTCTTTCCTTGGAATTCAGTCAAACT
TGCAACCAATGTTTGTACAGCAAAAACGACGACTGTGTCACCACACAAAA
ATGGCCCCCAGCCACCACTTTCTCTTGCCCAGACAAATGCCCCCATTACG
GACCACACTTCAGTGGAAACGTTGAAGACCCAAGCAATGACCGTCAATAC
GTTGCTTGCTGGAAGGGAGTCACTGTCGGATGTATTGCTTGCCCAGGAAA
CTTGAAATTCAACCAAAAAGAAAATGCTTGCTTGTACGAAGGCAAATACC
TCACCGAGCCATCTCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010702-exon-sc0000109-1491911889:241465..241553 | TCONS_00010702-exon-sc0000109-1491911889:241465..241553 | Clytia hemisphaerica | exon |
| TCONS_00010702-exon-sc0000109-1510915933:241465..241553 | TCONS_00010702-exon-sc0000109-1510915933:241465..241553 | Clytia hemisphaerica | exon |
| TCONS_00010702-exon-sc0000109-1575043694:241465..241553 | TCONS_00010702-exon-sc0000109-1575043694:241465..241553 | Clytia hemisphaerica | exon |
| TCONS_00010702-exon-sc0000109-1491911889:246297..246791 | TCONS_00010702-exon-sc0000109-1491911889:246297..246791 | Clytia hemisphaerica | exon |
| TCONS_00010702-exon-sc0000109-1510915933:246297..246791 | TCONS_00010702-exon-sc0000109-1510915933:246297..246791 | Clytia hemisphaerica | exon |
| TCONS_00010702-exon-sc0000109-1575043694:246297..246791 | TCONS_00010702-exon-sc0000109-1575043694:246297..246791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:241465..246791 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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