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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010696 ID=TCONS_00010696|Name=TCONS_00010696|organism=Clytia hemisphaerica|type=transcript|length=452bp
CAGgagaataacaaaaaaatattgaagtagataaaaaaaatgaaaatcga
gttatttttttacttggtGGCTGTTTCTATCATCTCTGGCAACAATGGGT
TAGAGATTGACGTCCAACAACCGATCAAAACTGACATCGGAAGCATTGTA
CAGCATGtcacacaacaacaacaacatttgAAAGACCACCGTTTGAATTT
AATGAATGTTATGGATGATGAATGGGCGAAGAAACTAGGTCATCTCAATG
GCTTTGATCTTATGAAGGAGgtagGATCAGGAGGAGGTGACGGATTCCCA
AAGTTGGACGTGTCCTTGAAATGTCAAGCTTCTTTGATGCAACTCTTCGG
TCCCGTTATGAACATAACCAATCTCAACCCTGCTGTCATTCTCGCTTTGC
TTGGACAACCTGTCGGAAAAGTACTGGACACTTGGGGGAAGCCGCCATCA
CG Run BLAST on NCBI transcript from alignment at sc0000109:73463..83565+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010696 ID=TCONS_00010696|Name=TCONS_00010696|organism=Clytia hemisphaerica|type=transcript|length=10103bp|location=Sequence derived from alignment at sc0000109:73463..83565+ (Clytia hemisphaerica)
CAGgagaataacaaaaaaatattgaagtagataaaaaaaatgaaaatcga
gttatttttttacttggtGGCTGTTTCTATCATCTCTGGCAACAATGGGT
TAGAGATTGACGTCCAACAACCGATCAAAACTGACATCGGAAGCATTGTA
CAGCATGtcacacaacaacaacaacatttgAAAGACCACCGTTTGAATTT
AATGAATGTTATGGATGATGAATGGGCGAAGAAACTAGGTCATCTCAATG
GCTTTGATCTTATGAAGGAGGTTTGTTTCTTTCTGGTTATAATCCGTTCA
CTTTTCTTTGGATAATCCTTAATTTCATGAGTCTGTTTGCTTATTCTGCA
AAAAACATTCCACAGCTCCATTAAAAATGCAGACAATCCATTCCCATTCT
TATCCAGGGCCCGCAccacgattttgaaagtgaggggCGGCGCGGGCCTT
GTTATTCGACACTTTGCAGTCAAAACATTGTAAACtctctggtcattaaa
atgtttatttttgaatGAACCCATTGCAGTGTTGAATCGAACAATTAAAT
TACGTCACGCGCTATCTTTAGTTTTGACGATTGGTTGAATAACTGCAATC
TTTTTTACAAGCTGGCAGCGTTTTTGAAGCAGCGTTTCAGACCTTGGAAA
AcataatgtcaatctggctttaaTAGCGAGTTAAtgtttttgcacttttg
aggacggtaaaggaactgaagcgatttggaaaatcCCGTAGTTCTGCCCC
GCAAAAATGAGGacagtgctgatttaccgtcgtcctcagttgctCAGGAT
CttgtcaaattagaaccttaccgtctccgtcgcagaaagtTACGCATACG
TAAACTTGGTAATGACAAAACCGTTAAAGCAATGAAAAAGAATAATTGTT
TCAATCTGATATTCTTGACaaaagtctgttccaaaaaaaattggtagTCC
GTGCTCTTTAGGATAAAACTCAGTAATATTCGTTGAAAAGATCATTTTCA
GCGGCTTGGGTGAAGATTCGTCGGGTACCTGAAAATTTTATAAAGAAGAA
ACTTTTATAtatactttttggacctacttcGCAGGTCCTTTAATTTAACC
TTCGTtcccgttcgttcgttcgttcgttcgttcgttcgttcatagTTTAG
CATAATGTTGCAAAATGACAGTAAGTGACGGAgactgattttcgaaaaaa
aaaaaaaaaatttgggcaatGGTTtcttttggattttcttatttagGAAA
ATTcccttttatcatttttagggaaaatgagcatttctcgtgATTGCCTC
ggtatttttttcagatttttgcacaaatggtaaaatggtaatgtttaaaa
tctgatggagtccgataattttcaaaagaaaatgtttagGCAAATTTGAG
CCAAATTCCGGCTTTGTGGATGTTGATTCATtagattttatctttaaaga
GATGGAGTTATCTTTAGAGGAAATAAAGGATTGTTTTTGTCGGAAAGCCA
TCATGAACAAGTTTCATCATATTTTCACGCTACGCATCTCTATGCTATGC
TGTTATCTTTCCTTTTCGTTCGAACATTATCATCTTCATTCAACATGTTT
CAGACTACCTATATCAGGTACGCGCTTtatttaataagaatacactttat
aagaatgtccatgatgaaaatggccaaataattaaaaataatgCTATTCT
TAGCATATCGCCATGGAATTTttctactcaagctaagaatgtcattttta
gagcattttcaattaaattGTCTATTACCCcgaagtaaggctcactcctt
tcacaaaaatgtcattttatgcttgagacgtatgtactaaatgttaaata
tagtctgaattaggatcctaacctaagaatgctgtaagaatattatatga
tttttcccaaaaaagttaagaatatccatgatgaaatagatttacaccat
tcttataaaaaaaagaaacgtgtagcCTACCAGCATGTATGTTGCttgtt
ttaaactttgaaaatcgCTGTTTTCAAATCTGTATTCAGATTTTTCCTAT
CTTTTTATCAAAGGAATGGAttgtatattttgaatttcCCTAATCTGGCT
ATCACTTATTGGTCACGTCAAGATCTAGACCAAATTCATTATGCGGTGCC
GCCTCATGCgagggatgagctggagtttttacaagatacttcactaattg
gtcatttaaagtgatagagatgaagctttctttagaaaaagtaatgagat
tcttttattacatcttaacgaccaaccaaatcaaataagagcttgtaaaa
actccagcttgtcccctcACGCGAAGGTAGTcgcacttttcaataaaatt
tataatCAAGATCAACGAAATGGTCGTCTGAGACCATGTTCAGATgttac
ggtttcgtatcgcTCCAGTATGGTTTGTTACGGATAAGAAGTGTTCATGC
TGATTTCGGAGCGTTTCGGAAGAGCAACGGAAGGAAACATTTCCGTTTCG
CAATTGAGTTTTTCCAAATAGAAAATACCGATATCAGCAGTCATGTTGTT
TTTATCAGGGATCAGTAAAACTTAATGAATCTCTCTCTATTATTTGATCT
TCAAAgaccaaagattttttttttggattagagaaagatttgaattacag
agagtaatttgaAATACTATTTAGCTGAAGGGAGCAATAAtatagttcga
attacagaaagattctgataaaagattcgaattagagagttgTCTGTAGT
AACTTTAAAAATCAAGGCGCAGAAATTATCCAGGCGTAGAAATTGCTAAC
ATAAAGTTTATTTTAGAGTAATGTCGCCTTGAAGTGTGTGGTAATAGTAT
ACACaggaaaaactttttgattccCTAGGCTATGGAAATATAtatttcca
gatctggaaatcCGGAATTGTCCCTAACCAATCCATAGCTAGGGAAGGTG
CAACAGCTCCCTAACTATGGAATTGACATATCCCGAACCTCAAAGTTTCA
TATGTATTTTTAGAATCATTATAGGGATTTTAATCCTACCAAACTCGGCA
TGCTTAATTTCCCTAAGGTTGGAAAGTTGATTTCTTCAATAGTAAAATCT
ATGGAAATGATATATCCCGAACCTCGAATCTTGCAATGGATTCATGGGAA
CACGATAGGGATATTAATTGCAATTCCCTCGGGATACTTAAATTCCCTAA
CAGTGGAAGGATGATTTCTCTTAATTGCATTACAATGTATTATTGGATTG
AGCCCATAGGGATATACGTATTCACCAGCTATTTATTTTAATATGGAAAG
CTTAGTTCCCGAGTCTTAGTGAAATATAAGATCAATACGAAAATTGACGA
tcgaaaaatcattattttttttcctgTTACGTAACAGCTATTCCAAATTT
TTATGATAATAATCAGGAAACAAGaaaatatgatttgatataaaGTTCGA
GATAAATTTCTTTGCAcaattcatgaaaaattatgtaaaacttttaaaag
ttaTCCTAAGAAATAAATAGTAAGAAATTTGACTTAAAAATCTTGTCTTT
TTAGCGTATTTNCTGTATAAGATCAGTGATCAGTACGAAAATTGACGATc
gaaaaaatcataatttttttttcaaattttttttcctattACCTATTTCG
AATTTTATCTGATAATCAGGAAACAAGAAAATATCATTGGATATAAAGTT
CGAGATAAGTTTCTTTGTACAATTCATGAATAATTATGTAAAACTTTTAG
AAGTTATCCTAAGAAATAAATAGTAAGAAATTTGACTTAAAAATCTTGTC
TTTTTAGCGTATATACATTATGCAATAGAAAAAAATGTGTTTGCTCAGTT
AAGTTAACTATATAGTTAAGAAGTCATTTTTGGACTAGAAAACTCGAGAA
TTTGTGTGGTAGATTAATCTGTTCGTATGTGTGGTTTTTCCCATTAGCCC
TTTCAAATTTGTTATAAATGTTTGCGTCTATTCCTGCAACTTTCTTTCAT
ATCATTCGTCAGTGTAGATTAGACAACTTGTCTTTTCAACGACCTTAGAA
AACTTCTTGGCAATACAGAATCAAGATATATAAAGGTAAGTGTGTAAAAA
TATACACCTTCATTCTTTATTCGTCTTTTGTGAATTTTGcgttttcaagt
ttttaaaataCAGTAACATCAGTTTAGGTGAAACGTaggaatttataaaa
attaaatgaaaatgtGGTGTGTTTTCTCATTTTAGATGTCCTACGCTTTG
TATCACTACACAGATTATTCAAGCGCTGTTTCGATATTGCAGTCACAATA
TATGAGGGGATCGAATAAGAGCTTTGACGCATACTTTGGTGAAGGAGTCT
ATTTCACTTCAATGGCACCAGCATTTGGCAAAATAAAGATTGCCGAAAAT
AATTGGGACGACGGTGAACAGGCTGTATTTCAAATGATATTCAGTGGGAG
GGTTGATTACTGCATCAAAGTGGTTTTTCCGTCCTACGACTTCGCGGCTG
GAAATGTTTTTCGATGTAACACCGGTAATACACAGCGCGATATTTACCTA
TATAAAGGCGATCTCGACCTTTCTCTTTACCATCACAAAGGAATCAAACT
GTGAAGAGGACTACTGCGACGAAAAGAAAAAGGACTGCACAATGCTTTGA
GTTTGCATTCGCAGAGAGAACTAATATATCGAATTATTGACTccaataaa
taataaatattttgattttagggTCAAAAAGAAATATCGTACTCGAAATT
GATTATAATTTGTATCTTAACCCTTTAATCTTAACCCTTTAACTCGTACC
TGTGTTTTACTCGTTgatcaaaaatggtcaaaaacggtcaaaatctttaa
aaaagtggatttttgtcaaatttttgtatttttttgacttttttacttaa
aatcttgctggaaagactcactttgatttttttcttgcttgaccTTGAAA
CACAATCCAATTCCttcgagttagaccaaaaatgacgatttctaactcaa
actgggcattacagggaGGTCTTCGCCTATAGCCCATGTCCAGTATACTC
GTCAttggtacttaaagggttaaatacCGTTACTCCGTAACTTCAAATTT
TCGATAtctttggacctacctcggaggtcttataaattaacccatgtccg
ttcgtccgtctattaccagcttttctcgggattggcacattagttttttt
tgaacaaatttgggccaaaaactccctaaaaatagggttttttggacttt
gtgcaaaatttttttctctgatttttggcagaaagacaGAGGGCAaagtt
ctctaaaaagtggctgaagtCGTTTTTCCGGAAATTtatttttggccgta
aaaatcggattttcttttgggggaaattccctttcgtcattttaaaggaa
aatgagcatttctcgtgATTGACTGGGATTTTTTTCTGATCTTACAGTTT
GcattttctttctattgttgccAGTTTTTCAACTAAAAGAAATTCCAATC
TCGACCGATATTTCATTTTGgcgggtaaaaaaaaaaaataggacGGCAGA
AGGTCGCGGCGCTTCTAGCTCCCGTTGAAAATTTCCCAACGTCTTTAGTT
TCGCTTTCACATCAACAAAGCATGTTCAGTGGAAAATTCCAATTGGACAT
TCAAACATTTAACATGGCACTTTTGTGCTAATATTAAGAAAAGGTGTACC
GTTGGAAATTTCCCAACGTCTTTAGTTTCGCTTTCACATCAACAAAGCAT
GTTCAGTGGAAAATTCCAATTGGACATTCAAACATTAACATGGCACTTTT
GTGCTAATATTAAGAAAAGGTGAACCGTTGAAAATTTCCCAACGTCTTTA
GTTTCGCTTTCCATTAACGAAGCATGTTCAGTGGGAAATTCCAATTCGAA
TTCCTCCTcttaaatttctttgatttaaacacaaaacataaagtaggcta
cgtcatatcttcctttgcTTTGAGCGTAAAATTCCTACTCGTCGTGgtac
taaagtcgatcatttaaaaaaaaaaaattcgaaattttgatgacgtcagc
agaaaataggaaacaggttttttactaatttctgctgacgtcatcaaaat
ttcgaaaaagaatttttctcaaatgatcgactttagtaagatacatcttt
ggtgaaagtttgaagacaattggataaaccattcttgagaaattcaattt
ttagttttgatgacgtcatcgattattacgtaataatcagtttttgcggt
ttttcgcgtaAATCAGggaaaaaaacaattaggttaaaCATCagaggtta
gaaactacatcatagtacccttcatgttcagtcaattgtttggtcatttt
ctgtcgactaatgcgatctaaatgtctatggtaattttcagtttttgaga
catgccataacttacccgagaccccggtggaactttcttcttcagtgggg
ataaaagttcctattgaaatctcaatggtgatagaaattttattgttcta
aggtttaaaaaaccagtggggatggttttggagagcCATTTTTAGACAAT
gattttcgagtggggatgaaatcaaagtcaatttcccagtgtgCTGAAAT
Tccaaggtattttcccaccggggaccgcaaatctttgccaaattttccag
tggggctggggtcccagtgggtctgtgacaatttctcttctttttttttc
aggtagGATCAGGAGGAGGTGACGGATTCCCAAAGTTGGACGTGTCCTTG
AAATGTCAAGCTTCTTTGATGCAACTCTTCGGTCCCGTTATGAACATAAC
CAATCTCAACCCTGCTGTCATTCTCGCTTTGCTTGGACAACCTGTCGGAA
AAGGTGAACgaaatattttggtttttaaattTACATTTTGTATAGTGGAg
tctttttaaaggttttatttttacatataagtgttcccgtttcatatcag
acacatttcATATCaagacagtgtctgcctattgttatattatgctgata
taagcaaaaatatgtttttccaatcttgctccacatccgtgtcaattcaa
tatcatcaaatagcttgtaaattaaaattgatgagtaagcaaacatttca
ctcttatttaaaaataaaatctttaacctCTCGAGTCTTTATGACTCAAA
TgtgtccttaactcgaacaagttttctagtTATATTTCACTCTCTGTGAT
ATTCAATTATCTTgggaatttgatcaattgatCGAACAGAATTGTAACCT
TAggtgaaaacaaaaagaaatgtaaTGTTTctggaatgcgggtgaaggaa
aaaagctttcatgcggccggccggaattttttttttttacttttttgaaa
acttaagatcattgaaatagaacttgatttacaagcgggaatatctaagC
AAATGgctttgatagcttgaacggtcaacttgattttatttatgatgaac
catatagatgGACCAATAGTCTGCGGCCGGgccagaaaattattattttt
cacccggccggtttccggaaacaatacattattttatttttgcctatatT
TCAATCATTTCAAGCCCAGTTTAAAAAGCgagttttttaagattttactt
ttcttttaaatctgtccgcttttttgggacacactgtagaAACTGCGCTG
TAATACCATAGTTTCTACCCCTCCTGCAGTTAggggggtcttgggttttg
atgaaccaaaagcaagggggcatgttaaaagtatgactttcctaaggggg
gttgCCAGTTAAGGGGGGGTCTTCTTACCTAAGGGGGGGGGGGTCTTCTT
AGATAAGGGGGGATCAAAAATCATCTAACCTAATTATGATTCTTGTACAA
Tcgtttcatttatactgattttctaagggggtgtgaaattttaaatgaat
ttcctaaggggggttagcacttaagggggggTCCTCTCACCTAAGGGGGg
cgtcttgacccctctagaaactatgaatACTGAAATGCCTGGAATAGAAT
GGGCTTTGCcatatacattttttaaatactaATCGTACGCATTAGAATCT
CCCTATCTCGCCTCTCTATAACCTGTCTCTctcgaaaaaacttttcaacc
CTTCGAATTTTTGAGAATTTGCACTGTTTATAGAAGATTTCTGGTGTATG
AAATTAAGCCTTTTTGTGTAAGTAAGTGCCGAAAACTAGGGTTCGATGTA
AACCAATTCTACATATCTCCATGTGAAATCTTCCCCGTAGAAAATCTTTC
CCCAAacaattagcctatttcatgGGATTTGTGCATCTGTTAcatgcttt
ttggacctaccccggtggaggtcctataaattaacctctgttcgtccgtc
cgttagttaccagcttttctcgagattggctcattagttttttctgattt
ttggcacaatgatgcaaaatggtaatccccaaaatgtgacggagcccgat
tttcgaaaaaaattcatttccggccgaaaatgccggaaaaaccggttttt
tgacattttctcaaggtttcatcattagttttttcagattttttgcacaa
agatgcgtattagcaatgcccaaaacttggccgagtccgatttttgagaa
aaaatcttttccggtcgaaaatgtcggaaatatgccggatatcgccgttt
ttgcagattttcatcgaactttttccttatatttcgttgttttttcacac
aaaaacattattaatagcaatgcccaccataaagcatgtttcaattgtcA
ATATAACTGATTTTTGTatccggaactttctaaaaatcgccggaacagcc
gattttcgccggaaaaacggtatttcttgaatttctcgagctgtacttta
tatttttttatgaaattttgcacactgatgtaaaatgacaatacctaaaa
agtgatggagcccgattttcgaaaaaaacatttttttccggccgaaattg
ccggaaatatgcctgaaaaactggttttggccgtttttgcagattttcat
tagattttttccttgtatttctatgtttttcacacaaaacgttattcata
acaatgctcaccatcaagcatgattcaatacactcttctcgagatgcata
aatttattgttgtcctcgttttcaaacagattccattgctataaaattac
atattcacaatgataattgtgttgtttacacctcatgagacattttggat
ttcaagtacttttgttgtagagttaatgtttgccttttgggaatttaaat
tggtttgaatgtataatttcatagcaatgaaatctgtttgaaaacttgaa
aacgaggacaacaataaatttatgcatctcgagaagagtgtattgtcaat
aaaactgatttttgcgaccagaactttctatttattttttccctacaacc
cttccctctccccccatcaacaatcaatgatgaatttattgcgttatgca
ttttcgctaaacgctatattttctgactgatttttttctcctcgcattgc
tatctaactttcatcatcaggtaggtccattcagcatctagcttgtttct
attcaatttacaaCGGGGAAATGTACAAATACGTGTAGATTTCCCTTCGA
GAAAGCCGTTgacaaaagttgattttattgttGTAATCATTCAATCGACT
TGGGAATCAAAAACTCTTTTCCAtagttttgcattttttttgaaCTTATC
TCAATTCGCGAAAAACTGTTCAATCATGAAAATTGATCACCGCAATTAGG
TAGACAAATACCATCTACTAAAAACacgaatgggctcttccagaaaatgt
tcgtacatgggggggaTGGTGgtggatatagtgtccgggggtagtgaaaa
atctacaaaatttgctgTGTTCGGGGGGGGGTAAGCTTGCTCTGTTTTTT
GGGCTGATTTCTtcctgtttgagggtaattttgagtgtccaggggtcaac
taatgcttgtccgggggtactTTTCCAAAAATGATATTTCCATCTAGAtt
attcaaatgttttttttggaaaagctcaatcctatgaaataggctattAA
CGTATTTCATGCTATCATACAGTACTGGACACTTGGGGGAAGCCGCCATC
ACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010696-exon-sc0000109-1491911889:73463..73732 | TCONS_00010696-exon-sc0000109-1491911889:73463..73732 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1510915933:73463..73732 | TCONS_00010696-exon-sc0000109-1510915933:73463..73732 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1575043694:73463..73732 | TCONS_00010696-exon-sc0000109-1575043694:73463..73732 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1491911889:80165..80315 | TCONS_00010696-exon-sc0000109-1491911889:80165..80315 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1510915933:80165..80315 | TCONS_00010696-exon-sc0000109-1510915933:80165..80315 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1575043694:80165..80315 | TCONS_00010696-exon-sc0000109-1575043694:80165..80315 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1491911889:83535..83565 | TCONS_00010696-exon-sc0000109-1491911889:83535..83565 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1510915933:83535..83565 | TCONS_00010696-exon-sc0000109-1510915933:83535..83565 | Clytia hemisphaerica | exon |
| TCONS_00010696-exon-sc0000109-1575043694:83535..83565 | TCONS_00010696-exon-sc0000109-1575043694:83535..83565 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:73463..83565 + |
Blast
The following BLAST results are available for this feature:
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