TCONS_00010682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010682
Unique NameTCONS_00010682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010682 ID=TCONS_00010682|Name=TCONS_00010682|organism=Clytia hemisphaerica|type=transcript|length=732bp
aaagtctGAATCAAGTCCCTCGCCATGATCTAACAATAAATGGTATCAAG
TTTTATTACTGCAACGTTGATATTCTAACATCAGGCAAAAAGAAAGAACT
TATACAAAACGTAGAGAAACAACAACCACACATTGTTGCCATATGTGAAG
TAAAACCAAAACATGGAACACTAAGAGAACTACACGAGTACGAATTCAAA
GATTATAAAGTTGTTTGTAATACGAATATGGATACCTACATTGGCCGTGG
AGTTATAATTCTTGCCCACGCATCAGTTCAGCATTTGATTGTTAATGTGa
ccaaatcaataaatcaagtCAACTTTATTGAAGCTTGTATCATAGAAGTT
CGCCTAAGTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAATAAAGTAAGCGA
ATTGCAAAACCGTTTCATCCCGCTCAAAACGATTGGAGGCGAGGGTTGGA
GAAAGAGAGGAAGAATTCCTATTCCAAAAGATCTCAAAACTGAAATAGCA
AAGAAAAAGCGTCTACATAGAAAATGAATGAAATCATCGCCGCGAGAGAA
AGACAAGAATCGCGTGAAATACACCCGTGTACGCAACCGAGTGACGAAAA
TGATGACACAAGCCCATAGAAATTACAAACGGAAAATCTgcaacaattca
aaaacaaaaccaaaagttttctggTCACATGT
Run BLAST on NCBI

protein sequence of TCONS_00010682-protein

>TCONS_00010682-protein ID=TCONS_00010682-protein|Name=TCONS_00010682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
SLNQVPRHDLTINGIKFYYCNVDILTSGKKKELIQNVEKQQPHIVAICEV
KPKHGTLRELHEYEFKDYKVVCNTNMDTYIGRGVIILAHASVQHLIVNVT
KSINQVNFIEACIIEVRLSGXXXXXXXXXXXXXXXXXXXXXXXXRIK
Run BLAST on NCBI

transcript from alignment at sc0000108:674690..675421

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010682 ID=TCONS_00010682|Name=TCONS_00010682|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at sc0000108:674690..675421 (Clytia hemisphaerica)
ACATGTGAccagaaaacttttggttttgtttttgaattgttgcAGATTTT
CCGTTTGTAATTTCTATGGGCTTGTGTCATCATTTTCGTCACTCGGTTGC
GTACACGGGTGTATTTCACGCGATTCTTGTCTTTCTCTCGCGGCGATGAT
TTCATTCATTTTCTATGTAGACGCTTTTTCTTTGCTATTTCAGTTTTGAG
ATCTTTTGGAATAGGAATTCTTCCTCTCTTTCTCCAACCCTCGCCTCCAA
TCGTTTTGAGCGGGATGAAACGGTTTTGCAATTCGCTTACTTTATTCTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTACCACTTAGGCGAACTTCTATGATACAAGC
TTCAATAAAGTTGacttgatttattgatttggtCACATTAACAATCAAAT
GCTGAACTGATGCGTGGGCAAGAATTATAACTCCACGGCCAATGTAGGTA
TCCATATTCGTATTACAAACAACTTTATAATCTTTGAATTCGTACTCGTG
TAGTTCTCTTAGTGTTCCATGTTTTGGTTTTACTTCACATATGGCAACAA
TGTGTGGTTGTTGTTTCTCTACGTTTTGTATAAGTTCTTTCTTTTTGCCT
GATGTTAGAATATCAACGTTGCAGTAATAAAACTTGATACCATTTATTGT
TAGATCATGGCGAGGGACTTGATTCagacttt

Coding sequence (CDS) from alignment at sc0000108:674690..675421

>TCONS_00010682 ID=TCONS_00010682|Name=TCONS_00010682|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000108:674690..675421 (Clytia hemisphaerica)
TTACTTTATTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCACTTAGGCGAACT
TCTATGATACAAGCTTCAATAAAGTTGacttgatttattgatttggtCAC
ATTAACAATCAAATGCTGAACTGATGCGTGGGCAAGAATTATAACTCCAC
GGCCAATGTAGGTATCCATATTCGTATTACAAACAACTTTATAATCTTTG
AATTCGTACTCGTGTAGTTCTCTTAGTGTTCCATGTTTTGGTTTTACTTC
ACATATGGCAACAATGTGTGGTTGTTGTTTCTCTACGTTTTGTATAAGTT
CTTTCTTTTTGCCTGATGTTAGAATATCAACGTTGCAGTAATAAAACTTG
ATACCATTTATTGTTAGATCATGGCGAGGGACTTGATTCagact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005994XLOC_005994Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010682-proteinTCONS_00010682-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010682-exon-sc0000108-1491911889:674690..675421TCONS_00010682-exon-sc0000108-1491911889:674690..675421Clytia hemisphaericaexon
TCONS_00010682-exon-sc0000108-1510915933:674690..675421TCONS_00010682-exon-sc0000108-1510915933:674690..675421Clytia hemisphaericaexon
TCONS_00010682-exon-sc0000108-1575043694:674690..675421TCONS_00010682-exon-sc0000108-1575043694:674690..675421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:674690..675421 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.9125	2.07275	4.60594	4.2137	0.470686	0.397521	0.479316	0.667561	0.525571	0.70806	0.530423	0.824821	0.945145	0.74013	0.450353	0.882686	0.761803	0.655474	0.228553	0.701086	0.629722	0.693332	0.250641	0.531945	0.55328	0.325002	0.974365	0.991865	0.286489	0.613682
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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