TCONS_00010679 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010679
Unique NameTCONS_00010679
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010679 ID=TCONS_00010679|Name=TCONS_00010679|organism=Clytia hemisphaerica|type=transcript|length=297bp
ATTCCGGTTAGTTTGATTGATGTACGATGTGTTTGATTGAGCTGTTGCGC
TAGCAATAACTAGAATCATTTAAGCTACAAAAACACTGATCGGATTTAAT
CGAACTGCAATGtaagtaatcaaactttaatcaaacatcaaactgaagat
tttctggCAAAGTTCTATTACTGTTAAATtaagttcgataatcgaacacc
tatcgttcgatttcgttcgatgtGTTCAATTACCAAAATCGGTTTAATTG
ATCATCGCCTGGCATCGgcgaggaaaagctggaacctTTACTTAaac
Run BLAST on NCBI

transcript from alignment at sc0000108:534663..534959

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010679 ID=TCONS_00010679|Name=TCONS_00010679|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0000108:534663..534959 (Clytia hemisphaerica)
gttTAAGTAAaggttccagcttttcctcgcCGATGCCAGGCGATGATCAA
TTAAACCGATTTTGGTAATTGAACacatcgaacgaaatcgaacgataggt
gttcgattatcgaacttaATTTAACAGTAATAGAACTTTGccagaaaatc
ttcagtttgatgtttgattaaagtttgattacttaCATTGCAGTTCGATT
AAATCCGATCAGTGTTTTTGTAGCTTAAATGATTCTAGTTATTGCTAGCG
CAACAGCTCAATCAAACACATCGTACATCAATCAAACTAACCGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005991XLOC_005991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010679-exon-sc0000108-1491911889:534663..534959TCONS_00010679-exon-sc0000108-1491911889:534663..534959Clytia hemisphaericaexon
TCONS_00010679-exon-sc0000108-1510915933:534663..534959TCONS_00010679-exon-sc0000108-1510915933:534663..534959Clytia hemisphaericaexon
TCONS_00010679-exon-sc0000108-1575043694:534663..534959TCONS_00010679-exon-sc0000108-1575043694:534663..534959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:534663..534959 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01189	0	1.36678	0.891451	7.05417	4.71671	6.20783	7.26462	1.3563	0.839999	0	0.267981	1.33804	1.11166	0.913932	0.245197	1.51032	1.23842	2.56642	0.447595	0	0.569282	0.922715	0	0.864029	3.0845	0	1.17766	0.893215	0.455022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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