TCONS_00010674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010674
Unique NameTCONS_00010674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010674 ID=TCONS_00010674|Name=TCONS_00010674|organism=Clytia hemisphaerica|type=transcript|length=377bp
CCTAATTTGTACTGACAATATATTTCATtatgacaaaaataaattacttG
GTTAAAAGGTtaataaagcctaaaaatattgtTAATTCATACTCGAAACA
ATGcaaatttaaccttttttggacgagagaaattaaatttttgaaatttt
gaaaatatttcgcACAACGACCCACTCGTTTTAGAATAGACCTATCTTAC
TCAAAACTTCATCTGGAAAGAGAAAATACTCTTAACTTTTGATACACGGG
TATCTAAAAAACCGCTGTTTAACGTTTGGGCGTCTAGCTAAAATGGTATA
GTTAACCAAATCTAAAAGACGCAGTTCACGTCTTATATGAAAAATGGGCG
TTGATGTAAAACGGATACTCTCGGGGT
Run BLAST on NCBI

transcript from alignment at sc0000108:448484..448860

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010674 ID=TCONS_00010674|Name=TCONS_00010674|organism=Clytia hemisphaerica|type=transcript|length=377bp|location=Sequence derived from alignment at sc0000108:448484..448860 (Clytia hemisphaerica)
ACCCCGAGAGTATCCGTTTTACATCAACGCCCATTTTTCATATAAGACGT
GAACTGCGTCTTTTAGATTTGGTTAACTATACCATTTTAGCTAGACGCCC
AAACGTTAAACAGCGGTTTTTTAGATACCCGTGTATCAAAAGTTAAGAGT
ATTTTCTCTTTCCAGATGAAGTTTTGAGTAAGATAGGTCTATTCTAAAAC
GAGTGGGTCGTTGTgcgaaatattttcaaaatttcaaaaatttaatttct
ctcgtccaaaaaaggttaaatttgCATTGTTTCGAGTATGAATTAacaat
atttttaggctttattaACCTTTTAACCaagtaatttatttttgtcataA
TGAAATATATTGTCAGTACAAATTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005986XLOC_005986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010674-exon-sc0000108-1491911889:448484..448860TCONS_00010674-exon-sc0000108-1491911889:448484..448860Clytia hemisphaericaexon
TCONS_00010674-exon-sc0000108-1510915933:448484..448860TCONS_00010674-exon-sc0000108-1510915933:448484..448860Clytia hemisphaericaexon
TCONS_00010674-exon-sc0000108-1575043694:448484..448860TCONS_00010674-exon-sc0000108-1575043694:448484..448860Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:448484..448860 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.422354	0	0.478211	1.40356	25.061	13.5024	13.5751	13.4713	8.18592	11.6826	3.63716	3.09414	1.26402	0.875135	0.35974	0.128685	0.634119	0.81244	3.1428	2.8189	0.408356	2.39018	2.42131	1.10066	0	0.404705	8.3974	7.41677	0	0.238806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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