TCONS_00010673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010673
Unique NameTCONS_00010673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010673 ID=TCONS_00010673|Name=TCONS_00010673|organism=Clytia hemisphaerica|type=transcript|length=619bp
ACGCCAAATAAGTTTTAGACAGGGGTTAAAGCCCCTGTGCGTACAATTCT
ATAAAATAATACAGGCTAGATGAAAATATAAAACTACTTAAAATACAATC
ACTAGATAATTAAACatacaaaaataagaaaatgatagtTTCATACAATA
TATTCAAAGTTaacaaaattgttcaaaaacaTATTAGTCGAGATTGGTTT
CTGGCAAGTATGGTATTCAGCAAGCCTTTTTAAGTTAGCATCAACAGCTT
TTTCTCAAAAGACCACTCCAGAAAAACGGAAAACGGAAAACTTCACTGAA
TACACAAAATTCGAATTGGATTTTTGCGTAGCTTtcgctttgatcccatg
taattTGCACGAAAGAAAATTCAAGTATACAAAACAGAAAGTGACCATTG
CGACAAGCAATTTTAGCTTATTTTACCATTTTGGCACGCTGTATGGGTCA
CTATAACAGCCAAAAGCATAAAAATATAAGGCAATTGTATAATCTTATTT
CTTACATTTTATAAGGCATTTACGCTTGTCGTTCGCtgtgtttacttgat
atttttgcGTAGTTTAAtgcgaaacccgtgtattataaattgtccaaaat
caaggagtgctaccattag
Run BLAST on NCBI

transcript from alignment at sc0000108:433719..434337

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010673 ID=TCONS_00010673|Name=TCONS_00010673|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at sc0000108:433719..434337 (Clytia hemisphaerica)
ctaatggtagcactccttgattttggacaatttataatacacgggtttcg
caTTAAACTACgcaaaaatatcaagtaaacacaGCGAACGACAAGCGTAA
ATGCCTTATAAAATGTAAGAAATAAGATTATACAATTGCCTTATATTTTT
ATGCTTTTGGCTGTTATAGTGACCCATACAGCGTGCCAAAATGGTAAAAT
AAGCTAAAATTGCTTGTCGCAATGGTCACTTTCTGTTTTGTATACTTGAA
TTTTCTTTCGTGCAaattacatgggatcaaagcgaAAGCTACGCAAAAAT
CCAATTCGAATTTTGTGTATTCAGTGAAGTTTTCCGTTTTCCGTTTTTCT
GGAGTGGTCTTTTGAGAAAAAGCTGTTGATGCTAACTTAAAAAGGCTTGC
TGAATACCATACTTGCCAGAAACCAATCTCGACTAATAtgtttttgaaca
attttgttAACTTTGAATATATTGTATGAAactatcattttcttattttt
gtatGTTTAATTATCTAGTGATTGTATTTTAAGTAGTTTTATATTTTCAT
CTAGCCTGTATTATTTTATAGAATTGTACGCACAGGGGCTTTAACCCCTG
TCTAAAACTTATTTGGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005985XLOC_005985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010673-exon-sc0000108-1491911889:433719..434337TCONS_00010673-exon-sc0000108-1491911889:433719..434337Clytia hemisphaericaexon
TCONS_00010673-exon-sc0000108-1510915933:433719..434337TCONS_00010673-exon-sc0000108-1510915933:433719..434337Clytia hemisphaericaexon
TCONS_00010673-exon-sc0000108-1575043694:433719..434337TCONS_00010673-exon-sc0000108-1575043694:433719..434337Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:433719..434337 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173062	0.168763	0	0.575119	0	0.0922116	0	0.10415	0.218754	0.180642	0	0.115258	3.62559	2.86873	0.0491352	0.210918	7.47023	14.0485	3.03549	5.96782	8.61731	8.32482	1.38901	1.44321	1.951	2.57037	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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