TCONS_00010669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010669
Unique NameTCONS_00010669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010669 ID=TCONS_00010669|Name=TCONS_00010669|organism=Clytia hemisphaerica|type=transcript|length=357bp
GTGAAATATGTAATTTAGTTGGTAGAACAGCTCATAAGCCACATCTTATA
GCTGATAAGTTGAAACAAAATCGACTGAtgttttttagagaaaaaatgtA
AGAGGATTGATGTAAAATATTATGtgctttgataaaaaagttttgatatA
TGGAAAAGAACGTACGTGCTTGAATCTTGTTGTACGAAGTCACATCCACA
TCCAGACAAACCTTCTTGGAACTGGATCATTTGAAATAACAGTAAGATCA
TTATCAGCGAGAATTTTTATAGAGCAGTTGTTGCGATTCGTGATTTTAGG
GCACTATAGTGCTTTTCTGAAGGACATACGTGATATTTTATACACACTGC
TCGaacg
Run BLAST on NCBI

transcript from alignment at sc0000108:278689..279045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010669 ID=TCONS_00010669|Name=TCONS_00010669|organism=Clytia hemisphaerica|type=transcript|length=357bp|location=Sequence derived from alignment at sc0000108:278689..279045 (Clytia hemisphaerica)
cgttCGAGCAGTGTGTATAAAATATCACGTATGTCCTTCAGAAAAGCACT
ATAGTGCCCTAAAATCACGAATCGCAACAACTGCTCTATAAAAATTCTCG
CTGATAATGATCTTACTGTTATTTCAAATGATCCAGTTCCAAGAAGGTTT
GTCTGGATGTGGATGTGACTTCGTACAACAAGATTCAAGCACGTACGTTC
TTTTCCATatatcaaaacttttttatcaaagcaCATAATATTTTACATCA
ATCCTCTTacattttttctctaaaaaacaTCAGTCGATTTTGTTTCAACT
TATCAGCTATAAGATGTGGCTTATGAGCTGTTCTACCAACTAAATTACAT
ATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005981XLOC_005981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010669-exon-sc0000108-1491911889:278689..279045TCONS_00010669-exon-sc0000108-1491911889:278689..279045Clytia hemisphaericaexon
TCONS_00010669-exon-sc0000108-1510915933:278689..279045TCONS_00010669-exon-sc0000108-1510915933:278689..279045Clytia hemisphaericaexon
TCONS_00010669-exon-sc0000108-1575043694:278689..279045TCONS_00010669-exon-sc0000108-1575043694:278689..279045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:278689..279045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.719811	1.66001	0	0	0.463539	1.01744	1.64911	1.2494	0.257371	0.459394	0	0	0.266064	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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