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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010668 ID=TCONS_00010668|Name=TCONS_00010668|organism=Clytia hemisphaerica|type=transcript|length=775bp ttaccaagcagcctcaatgtttcttaagaaatcgggcttttgagccttaa atgtttcttacatgtttNTTCTTGGTATATTCATGTTGATTGTGACTCTG ATGTGTTTAGGGCTATCTGTATCCAATGGCGCGCTGAATGGAGTTTTATA CATGAAAATGAAGCGCCGTTTCGAGACAAATACTGTAAACCGTATGGCAG ATTCCACTGATAAGCTCACACGAAGACATATAATCAACCAAAAGAAAGCG ATCGGAACTTTATTGCTCATTTCAACAGCGTTAGTAGTTTGTTATATGCC GAATGGAATTTTATTTGGAGTCATTTCATTCCAGATTTTTACAAACGACT CAGATACTAAATCTGACCTCTATTCAAAATACAGTCCATGGGGACATGTG CCAATGCTACTCAATGCTGGTCTAGATAGCTTTATATACATCATCCGAAA ACGAAGCATTTTTCGTTATTATAAGATTCGATTATTGAATTTatggtatg gtttgttgttGAAGTCGAATGAAACTCAAGATAGAAGTACAATGGACATG TGGAGACGTAAACACACTCTGAAAACCGATACTATGATTTTATCTCCAGG TCTATCAGTGCGTCACCAAGTGAAAAACAACTTGGTGTGAGAAATTCTTT ACCGACATTACTGTTGGTAGTTAGTTGTAGAAGTCATCAGGAAATTAGct ttccagaaaaaaccgtataccccctgttgaggggGTCTATTTttcggttt ttttctggaaaaacccatcttgtcg Run BLAST on NCBI protein sequence of TCONS_00010668-protein >TCONS_00010668-protein ID=TCONS_00010668-protein|Name=TCONS_00010668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MFXLGIFMLIVTLMCLGLSVSNGALNGVLYMKMKRRFETNTVNRMADSTD KLTRRHIINQKKAIGTLLLISTALVVCYMPNGILFGVISFQIFTNDSDTK SDLYSKYSPWGHVPMLLNAGLDSFIYIIRKRSIFRYYKIRLLNLWYGLLL KSNETQDRSTMDMWRRKHTLKTDTMILSPGLSVRHQVKNNLV Run BLAST on NCBI transcript from alignment at sc0000108:276279..277053 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010668 ID=TCONS_00010668|Name=TCONS_00010668|organism=Clytia hemisphaerica|type=transcript|length=775bp|location=Sequence derived from alignment at sc0000108:276279..277053 (Clytia hemisphaerica) cgacaagatgggtttttccagaaaaaaaccgaaAAATAGACcccctcaac
agggggtatacggttttttctggaaagCTAATTTCCTGATGACTTCTACA
ACTAACTACCAACAGTAATGTCGGTAAAGAATTTCTCACACCAAGTTGTT
TTTCACTTGGTGACGCACTGATAGACCTGGAGATAAAATCATAGTATCGG
TTTTCAGAGTGTGTTTACGTCTCCACATGTCCATTGTACTTCTATCTTGA
GTTTCATTCGACTTCaacaacaaaccataccatAAATTCAATAATCGAAT
CTTATAATAACGAAAAATGCTTCGTTTTCGGATGATGTATATAAAGCTAT
CTAGACCAGCATTGAGTAGCATTGGCACATGTCCCCATGGACTGTATTTT
GAATAGAGGTCAGATTTAGTATCTGAGTCGTTTGTAAAAATCTGGAATGA
AATGACTCCAAATAAAATTCCATTCGGCATATAACAAACTACTAACGCTG
TTGAAATGAGCAATAAAGTTCCGATCGCTTTCTTTTGGTTGATTATATGT
CTTCGTGTGAGCTTATCAGTGGAATCTGCCATACGGTTTACAGTATTTGT
CTCGAAACGGCGCTTCATTTTCATGTATAAAACTCCATTCAGCGCGCCAT
TGGATACAGATAGCCCTAAACACATCAGAGTCACAATCAACATGAATATA
CCAAGAANaaacatgtaagaaacatttaaggctcaaaagcccgatttctt
aagaaacattgaggctgcttggtaa Coding sequence (CDS) from alignment at sc0000108:276279..277053 >TCONS_00010668 ID=TCONS_00010668|Name=TCONS_00010668|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000108:276279..277053 (Clytia hemisphaerica) TCACACCAAGTTGTTTTTCACTTGGTGACGCACTGATAGACCTGGAGATA AAATCATAGTATCGGTTTTCAGAGTGTGTTTACGTCTCCACATGTCCATT GTACTTCTATCTTGAGTTTCATTCGACTTCaacaacaaaccataccatAA ATTCAATAATCGAATCTTATAATAACGAAAAATGCTTCGTTTTCGGATGA TGTATATAAAGCTATCTAGACCAGCATTGAGTAGCATTGGCACATGTCCC CATGGACTGTATTTTGAATAGAGGTCAGATTTAGTATCTGAGTCGTTTGT AAAAATCTGGAATGAAATGACTCCAAATAAAATTCCATTCGGCATATAAC AAACTACTAACGCTGTTGAAATGAGCAATAAAGTTCCGATCGCTTTCTTT TGGTTGATTATATGTCTTCGTGTGAGCTTATCAGTGGAATCTGCCATACG GTTTACAGTATTTGTCTCGAAACGGCGCTTCATTTTCATGTATAAAACTC CATTCAGCGCGCCATTGGATACAGATAGCCCTAAACACATCAGAGTCACA ATCAACATGAATATACCAAGAANaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00010668-exon-sc0000108-1491911889:276279..277053 | TCONS_00010668-exon-sc0000108-1491911889:276279..277053 | Clytia hemisphaerica | exon |
TCONS_00010668-exon-sc0000108-1510915933:276279..277053 | TCONS_00010668-exon-sc0000108-1510915933:276279..277053 | Clytia hemisphaerica | exon |
TCONS_00010668-exon-sc0000108-1575043694:276279..277053 | TCONS_00010668-exon-sc0000108-1575043694:276279..277053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000108 | supercontig | sc0000108:276279..277053 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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