TCONS_00010666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010666
Unique NameTCONS_00010666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010666 ID=TCONS_00010666|Name=TCONS_00010666|organism=Clytia hemisphaerica|type=transcript|length=268bp
ccccccgtttatttggaacctatgAGTATCCACTAAACTTTTTGAGATTA
TGGACAACTGGTTCATACAGATTCCAGTCCACTAGAATGATTTTAATGTC
TGATGTGTTGGCCTTAATGTTTGTATTTTGTTATTTAAAAGTTCCTAAAA
AAGGTCAGTTTTTCTTTGGAATTTCCGTTATTATGGTTTTGCTATGGTTT
TACTGTTAAAATGTCCTCGGTCATCGCAAAAACATCGCAagctaaaaact
ttacaacttAAATCGAAG
Run BLAST on NCBI

transcript from alignment at sc0000108:131249..131516

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010666 ID=TCONS_00010666|Name=TCONS_00010666|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000108:131249..131516 (Clytia hemisphaerica)
CTTCGATTTaagttgtaaagtttttagctTGCGATGTTTTTGCGATGACC
GAGGACATTTTAACAGTAAAACCATAGCAAAACCATAATAACGGAAATTC
CAAAGAAAAACTGACCTTTTTTAGGAACTTTTAAATAACAAAATACAAAC
ATTAAGGCCAACACATCAGACATTAAAATCATTCTAGTGGACTGGAATCT
GTATGAACCAGTTGTCCATAATCTCAAAAAGTTTAGTGGATACTcatagg
ttccaaataaacgggggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005978XLOC_005978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010666-exon-sc0000108-1491911889:131249..131516TCONS_00010666-exon-sc0000108-1491911889:131249..131516Clytia hemisphaericaexon
TCONS_00010666-exon-sc0000108-1510915933:131249..131516TCONS_00010666-exon-sc0000108-1510915933:131249..131516Clytia hemisphaericaexon
TCONS_00010666-exon-sc0000108-1575043694:131249..131516TCONS_00010666-exon-sc0000108-1575043694:131249..131516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:131249..131516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91592	1.13739	0	1.29202	1.57291	2.48587	4.49865	5.61544	5.40582	6.69598	12.9986	5.82596	2.32714	4.83353	0.662302	1.4215	0	0	0.619938	0	4.51084	1.65017	0.668667	1.82375	0.626139	1.67644	5.59763	2.56026	0.647289	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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