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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010658 ID=TCONS_00010658|Name=TCONS_00010658|organism=Clytia hemisphaerica|type=transcript|length=2439bp
CTTTTTCCTTTCATTGTTCAATTATATTTGTATACATCTTTgctatattt
tgaatttgttttgaaaaatgttttaattcgGTTGAGTGAGTTTGTGCATC
GAAGTAGAACTAATTGTTTTGTATACCTTTAGCGACTTGTATGCAGCTAG
ATTTTCTGTTGCAGAAGTCTATGGACAACTGAAGTTGTTGTGCGTCTGTG
GtgcacacatttttttttttcattttcactcaCGTGaccTGAATGACAGG
ACGTAAAAATGCATACAAAATGGACATTTCTGGCTCTGATGATCGCAATA
ATAACGACAACACAAGGACAACATTactcaaaacaagaaaaaggaATGTC
GATTTCATTGTTCCAATTCGATCCAGCAACATTAGGGCTTTACAATCACG
CCCAAGCTAACCACATATCACACCACGGGCGTGGGCGCTTACCACTTCAC
GCCAACCCACGCCGACGTAAAAAGACCAATGTCAAGCCACAAAAGCGAAC
GAAAAATCCTGATAAAATTTTCACGAATTCGACTGCTCAGTTTGCCAATA
AAACAGATACAGTTAAACAGCTGAGCATGAATCCATCACCGAACCAAAAT
GACGCGAAGGAGCATTTGACCAATGTTAAATTTGACAGCCTACTTAAAAA
TTCCTCATCTCTCATACAACCATCTAATATGACTCTCCTCTCTGGTCAAA
ATGCAACAAAAGCTAACACCACGAAAGAAAAACCTAAGGAAGAGTTGTTA
TTTTACCGAAATAAGACCAATACAGGATCCACAGATAATTCAGAGAAAGT
CAACAGCGTTAAATTGACTAAAACAACTCCACCCGAAATTCACCAGGAAA
ATGTGCCAATATTAAAGGAAGTCAATGCTACAATATCGAAAAATGCTACT
TTAAACAACAAAGATAACACCTCGAATTTTACTTCAAACTATAGAAATTC
AACGATGAATCTAAGCAAAAATGCAACAGTATCGAATCCTCAGAACCATA
CTTTATCTCAACCAGCAAATACTACATTAAACTTAAACAAGACAATCTCA
GCTATATCGTCCGCTAAGTTTCTCCAGAACGAAACCACTGTATTTGATGT
CGATTACAAACGCAAACGAAATGAAATTCTCGCTCAATACATCCCTTTGC
ATAACGTATCCAGAGCTGACCGCAATTCTTCGTTTCAAGCAGGCTCTAGG
AAACATCTCAAGCACCAAATGTTTCCAGAGTGTTATCGGTGTACAAAAAA
CTCTACTTATCCAGAATGCGTACGGCaatcaaaaatcttgaaatgtAATC
AAGGCTTGAATAATATTTGTTTCGCAAGATCACATAAGAAGAAAGACAAT
AATTTTATCACTTATGAAATGGGATGCACCAATCATAGGCAGTGCTTGAA
AGCACGTGCATTTCCTTGTAGAGATGGTTCAAAACGCTGTTTCACGTGTT
GTCAATTCAATAGATGCAATGCAAGTCCCCATCACGGTGTCTTCGAAACG
GATGAGATTAATCTTGATGAactgacaaaagaaaaaggaaaagagaaaaa
tgcttCGACGTTGAAAAAATGTAACAATGCACTGGTTGTCATGGCAACAC
TCCTAATTTTCTTCCTACTCTCATAACCATCATATATATATTTGATGAAT
AATCATTGACATCTCAAAAGTCAAACTGTCAAATCGAGGTAATGGTAAAC
AGTTTATCATGTTGTGACATATGGTATCGTTTgaattcattttctttctt
gaCCATCTCGTCCCGTTCTTTAATAACACAAATCAAGATTATAATTAGCA
TACCTCATTATTTTAAGAAATCAATGAAACATCATCTTTTCTGGGATTTA
CTTTGTCGATTGGACAGCAATTTGATTCCACGACTGACTGATGTATTTAT
TGATCTCAAACAATCTGGCTCTAGTGCACGTTTGATATTTTATTACCTTC
AAGAAGCCTTTGCCATCGTAATAAGCCTTGTCACCAGGTCAAGAAAATGT
GAAGATTTCTCTTACTTTCTATGATCAGATTTAACATCGGTAACCAGATG
GGAGATTTAACCGTTACCAACTGatcaaagaaaaaggaaaatgagaTTGA
CTGTCTCGCAAAGAACCCTGGAAACTCAAATAATAATAACGTAACAATTT
TTATTGACTCCGTGTATTTTTAACTCAATACTGGAACGATAGTACTTCGA
TTGTATTGGAACAAACTTGTATAATATAAAAACCAACAATGAAAATAACT
GTTTGGCTCGTGTGTTAGCAGGCCCGAAATAAATACATGAATGgcatttt
tttgacgtttatcCAACGTCCACATCATCCATATGAATGGCATTATTTTA
AATGACTTGATTTTTACAGATCTTTCATTATGTACCGTAAATTTTCTCTa
agaacaaaaataaatacGTTATCACAAATtataaaataa Run BLAST on NCBI transcript from alignment at sc0000108:557822..561337- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010658 ID=TCONS_00010658|Name=TCONS_00010658|organism=Clytia hemisphaerica|type=transcript|length=3516bp|location=Sequence derived from alignment at sc0000108:557822..561337- (Clytia hemisphaerica)
CTTTTTCCTTTCATTGTTCAATTATATTTGTATACATCTTTGCTATATTT
TGAATTTGTTTTGAAAAATGTTTTAATTCGGTTGAGTGAGTTTGTGCATC
GAAGTAGAACTAATTGTTTTGTATACCTTTAGCGACTTGTATGCAGCTAG
ATTTTCTGTTGCAGAAGTCTATGGACAACTGAAGTTGTTGTGCGTCTGTG
GTGCACACATTTTTTTTTTTCATTTTCACTCACGTGGTAAGGTATTTTTG
TAATCATTTTTCTTTAAAGGTTTTGTTTTTAAATAAGGTTGATATATAGT
TTGCTTACTCGTCAATTTTAATTCTCGAGTTTTTACACATTAGATCGATA
CGAATGTGGAGCAAGATTGGTCAGAAATAGGAAAAGAAACACATTTTTTG
CTTATTTCAGCATAACATAACAAAAGGCAAACACTGTCCTGATATGAAAT
ATGTGTCTGATATGAAACGGGAACACTAATGTAAAAACAAAACCTTTAAA
TCGTGTCCACAACTTCAGATGACTTTTGATGTTAGGCGTTGCTATGGACA
CCAACATGGTACTTCTTTCGATTTCCCCTTATTTTTGCCAATATTACAAT
TGATTTGTCCAACTTTGAATTATTATAACAGTTTTATTTTTTTAAGACCT
GAATGACAGGACGTAAAAATGCATACAAAATGGACATTTCTGGGTAAGGA
TCTTTTCTAATACAATTGCTCAAGAATATGAATTTGACCTTGAGTCTAAA
TTTTCCAGGCTAGAAAATTCAATAGAATTGATTCTCAGACGTTTCGAGGC
TCTTTCTCTAAAATTTATGTCAGGTTTTCAGTCAATTTTTTTCAAATTTT
TCCAAATCATTATCTTTGTGTCTCATTTGGTATATTTCTGTTTTTGCTTA
CCAAAATATTTGCCACGATGTTCAAAGATTGATTTAGTTTGGTATTCCTT
TTCAGCTCTGATGATCGCAATAATAACGACAACACAAGGACAACATTACT
CAAAACAAGAAAAAGGAATGTCGATTTCATTGTTCCAATTCGATCCAGCA
ACATTAGGGCTTTACAATCACGCCCAAGCTAACCACATATCACACCACGG
GCGTGGGCGCTTACCACTTCACGCCAACCCACGCCGACGTAAAAAGACCA
ATGTCAAGCCACAAAAGCGAACGAAAAATCCTGATAAAATTTTCACGAAT
TCGACTGCTCAGTTTGCCAATAAAACAGATACAGTTAAACAGCTGAGCAT
GAATCCATCACCGAACCAAAATGACGCGAAGGAGCATTTGACCAATGTTA
AATTTGACAGCCTACTTAAAAATTCCTCATCTCTCATACAACCATCTAAT
ATGACTCTCCTCTCTGGTCAAAATGCAACAAAAGCTAACACCACGAAAGA
AAAACCTAAGGAAGAGTTGTTATTTTACCGAAATAAGACCAATACAGGAT
CCACAGATAATTCAGAGAAAGTCAACAGCGTTAAATTGACTAAAACAACT
CCACCCGAAATTCACCAGGAAAATGTGCCAATATTAAAGGAAGTCAATGC
TACAATATCGAAAAATGCTACTTTAAACAACAAAGATAACACCTCGAATT
TTACTTCAAACTATAGAAATTCAACGATGAATCTAAGCAAAAATGCAACA
GTATCGAATCCTCAGAACCATACTTTATCTCAACCAGCAAATACTACATT
AAACTTAAACAAGACAATCTCAGCTATATCGTCCGCTAAGTTTCTCCAGA
ACGAAACCACTGTATTTGATGTCGATTACAAACGCAAACGAAATGAAATT
CTCGCTCAATACATCCCTTTGCATAACGTATCCAGAGCTGACCGCAATTC
TTCGTTTCAAGCAGGCTCTAGGAAACATCTCAAGCACCAAATGTTTCCAG
AGTGTTATCGGTGTACAAAAAACTCTACTTATCCAGAATGCGTACGGCAA
TCAAAAATCTTGAAATGTAATCAAGGCTTGAATAATATTTGTTTCGCAAG
ATCACATAAGAAGAAAGACAATAATTTTATCACTTATGAAATGGGATGCA
CCAATCATAGGCAGTGCTTGAAAGCACGTGCATTTCCTTGTAGAGGTTTG
TTCCTATATCGATCAGTTCGGTGTTATCTCTTTTATTTGGGACGTGTCAT
TATATACATTAAAAGTGAGGTTTTTTAAAGGAAGTTTTTATTGGACGAAT
CTTAATTTGACATAATTCTTATTTCGTCCAGTAAAAAGTGCGTAGCATGT
AAAACTACATACCTTTTGGTAATTTATATATTTTATGCATAATTTTCACG
ATCGAAAAAATATTGTTTAATTTCCAATGGATTTTCCACATGTAGAAATA
TAAAAAGATTTGCTGATTAAATTTCTATTTCTGGCGGGACTAATAAAAAC
GGGGAGCTCCCCTCCTCTTGAAAAAAACTTGAAAATCTTCAGAGATGCCT
TAAATTTAAAGAATTTAAACTGATAAACTTATTTCAATTTCTTTTTGCAG
ATGGTTCAAAACGCTGTTTCACGTGTTGTCAATTCAATAGATGCAATGCA
AGTCCCCATCACGGTGTCTTCGAAACGGATGAGATTAATCTTGATGAACT
GACAAAAGAAAAAGGAAAAGAGAAAAATGCTTCGACGTTGAAAAAATGTA
ACAATGCACTGGTTGTCATGGCAACACTCCTAATTTTCTTCCTACTCTCA
TAACCATCATATATATATTTGATGAATAATCATTGACATCTCAAAAGTCA
AACTGTCAAATCGAGGTAATGGTAAACAGTTTATCATGTTGTGACATATG
GTATCGTTTGAATTCATTTTCTTTCTTGACCATCTCGTCCCGTTCTTTAA
TAACACAAATCAAGATTATAATTAGCATACCTCATTATTTTAAGAAATCA
ATGAAACATCATCTTTTCTGGGATTTACTTTGTCGATTGGACAGCAATTT
GATTCCACGACTGACTGATGTATTTATTGATCTCAAACAATCTGGCTCTA
GTGCACGTTTGATATTTTATTACCTTCAAGAAGCCTTTGCCATCGTAATA
AGCCTTGTCACCAGGTCAAGAAAATGTGAAGATTTCTCTTACTTTCTATG
ATCAGATTTAACATCGGTAACCAGATGGGAGATTTAACCGTTACCAACTG
ATCAAAGAAAAAGGAAAATGAGATTGACTGTCTCGCAAAGAACCCTGGAA
ACTCAAATAATAATAACGTAACAATTTTTATTGACTCCGTGTATTTTTAA
CTCAATACTGGAACGATAGTACTTCGATTGTATTGGAACAAACTTGTATA
ATATAAAAACCAACAATGAAAATAACTGTTTGGCTCGTGTGTTAGCAGGC
CCGAAATAAATACATGAATGGCATTTTTTTGACGTTTATCCAACGTCCAC
ATCATCCATATGAATGGCATTATTTTAAATGACTTGATTTTTACAGATCT
TTCATTATGTACCGTAAATTTTCTCTAAGAACAAAAATAAATACGTTATC
ACAAATTATAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010658-exon-sc0000108-1575043694:561102..561337 | TCONS_00010658-exon-sc0000108-1575043694:561102..561337 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1575043694:560645..560691 | TCONS_00010658-exon-sc0000108-1575043694:560645..560691 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1575043694:559243..560382 | TCONS_00010658-exon-sc0000108-1575043694:559243..560382 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1575043694:557822..558837 | TCONS_00010658-exon-sc0000108-1575043694:557822..558837 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1510915933:561102..561337 | TCONS_00010658-exon-sc0000108-1510915933:561102..561337 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1510915933:560645..560691 | TCONS_00010658-exon-sc0000108-1510915933:560645..560691 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1510915933:559243..560382 | TCONS_00010658-exon-sc0000108-1510915933:559243..560382 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1510915933:557822..558837 | TCONS_00010658-exon-sc0000108-1510915933:557822..558837 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1491911889:561102..561337 | TCONS_00010658-exon-sc0000108-1491911889:561102..561337 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1491911889:560645..560691 | TCONS_00010658-exon-sc0000108-1491911889:560645..560691 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1491911889:559243..560382 | TCONS_00010658-exon-sc0000108-1491911889:559243..560382 | Clytia hemisphaerica | exon |
| TCONS_00010658-exon-sc0000108-1491911889:557822..558837 | TCONS_00010658-exon-sc0000108-1491911889:557822..558837 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:557822..561337 - |
Blast
The following BLAST results are available for this feature:
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