TCONS_00010654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010654
Unique NameTCONS_00010654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2461

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010654 ID=TCONS_00010654|Name=TCONS_00010654|organism=Clytia hemisphaerica|type=transcript|length=2461bp
TCAGGTTTCAACAAAGTGGATATCAACTACCGAGCGAGTATTACCCAAAT
GCGCGAGTTGATTATGAACAGTGCTAGTTGTAAACAGTTCATCAAGTTCA
AATGTAAAGGCTCGCCAATTTTCAATTCGCCGACTGGTCCACCTTACGTC
AGTTGGATGGGCGGTGATGACGTGGCGCATTTCTATTGGGGTGGAGCCTT
AGATAACCGAGGTTATTGCTCATGTGGAGTAAAGAGTGATTGTAGAGTGG
GCGGTCGTCTCACTGGTCAATACTGTAATTGTGATTCATTGAGCAAATTC
CAAGATGTGGAAGATGAAGGCAACTTCACCATCAAAGAACATCTTCCTGT
CCGTGCTGTCAATTTCATGGgaaaagttttaaagaattcGGTCACAGCTT
TGTTACGAGTTGGGCACTTAAGATGTCAAGGATTCGGGTCACATGAAATT
GCCGCAACTTTCCGTAAACCGTATTCTTACTTATCCGTTTTCCATCCGGA
CCAACCGTTCGATAATGTGCAAGCTGGTGAAAtttctttcgatttcaaaa
caaGTGAAGCATATAATTACATGACAGTCGCACACGCTATTGGTCCATTC
TCTGGAGATTACATCAAAATTATGATCTGGTCTAAAACGATGATGAGAGT
TCATCTGAATCTTGGATTTGGTGATCTCAAGCAGGATGTTGATATCTCGC
GGACAGGGCGGACGCTTGATGACAACGAGTGGCATGAATTTAGTGTGATG
TTCAACCCGAAAGAGATGAATGTTACTCTTGACGGTGTACGCATGATCCA
AGGGCTTCCACTTCAAGCAGAACCTGTCTTCTTTAATGTAGATGCAACTC
CCGTATATATCGGTGGCAGTTATCATGATATTTTTGGATTCGTTGGTTGT
ATTAGAAGTCTGtatgTTAATGGTCGTATCTTCGACATCAGTAATTTGGC
AGTCggaaaagaaaatgaaggaaTCTATTCTGGATGTGGGTCAGCCTGTC
CATTATTGAATAGACCATGCAATTATGGAGAATGTATGGACCAGTATGAT
TCGTTTAAGTGTAATTGTTCAGTCTCACCGTTCGGTGGCAAGTTTTGCCA
AAATGAAACTCGACCGATGACGTTCGGAGGAGGTAGTTACATTTCATACA
ATATGGTCAACGTCAACCACACGCGACCGCTTGCCACCGCAAAAATAGTG
ATCGGCTTCAAGACTACCACACCAAACGTTGGTTTGGCGCAACTCGAAGG
AAACCATTCCCGGCATTTCTCTTTAGCGCTTATAGATGGGTACGCAACTC
TCTTTTGGaatctcaaaatcaaaaaagaagatgGTTCGTCAGGGACGCTT
GAGGAGACAGCAACTGAGGTTATACAGATCACAAAACGCAGGCTGAACAA
TGATAGACATAACGTTATTAAGCTTATCATTAGCAGTCGTCAGATCAAAA
TATCAGTTCCGAATTATGGGCTTTCCGCATCTGGAAACGTTACCGAAGTT
CCGGTATTCAATGAACGTGGTGACATCATCGGTATGGAACTTCAAGAATT
TGAGCGTCCTACCAAAGTGACCATTGGCCGTGTAAAAGATATCAAGATGA
ATGTTGGATCAATAAATCTTCCATTAACATACCAAGGATGTATGAGTGGT
GCCAAAATGGTCTATACACCTCACAAGTCGAAGAAAGATCCTTTCCCAGA
ATCGAGGGAGTTGGATTTCTTTAAAATGATGGAAGAATATCAATCGGGTG
GAGGGAGCTCCAATAACCAAGAACAACCCTTATTGGAGGGAAGTTTCCCT
TCATCTACTGGTGAAGCTGGATGTGGTGCAGATCTACCTACTCCGGGAGA
ACTTCCAACCGTTGGTCCAGCGAAGCAATTCTTCACAAAATCTCCTGGTC
TCGATAACTCTGTTAGAATCGAAGAGACTGATTGGGTAAACCAAATGATG
TTAGTCGCTTGTATTATTATCCTCACAGCTCTGATACTCGGCTTTCTATA
CGTTCTCTACTCCAAGGCCGCCAAGAACTATCAAGAGTACGAGCGTATAC
ATCGTGCGCAAAAACCACGCGCCGCGCAACCCATGAAAAAGATGCAAGCG
ATGGCTTCAGGTCAGCAACAGCAACCATCTTACGAAAAACAGAACTTATT
GAATGTTACCGAAGAACCTGAAGACCAAAGTGGTGGTGGTGATGGAAtgt
atttataaaaaaagaattttcgaaaGCAGAGGAATCcttgaaaattttat
tgaacGATTAGGCTACGTTCTTCTTTAAGAAGCTCGTAAATTCACTTTTG
ACGAAGGTTTGTTTGATATTTGACGGAGCTGTACGTAACACAGACACTGT
AGAGACACTTTAACGATGAATTCAATGATAACTATTTGCTTCGGATGATG
ATGGAAAGGATCATAGAATCAACTAAGTCCAGACAGAATTGAATGCGAAG
GCTTTTCTAGA
Run BLAST on NCBI

protein sequence of Laminin G domain containing protein

>TCONS_00010654-protein ID=TCONS_00010654-protein|Name=Laminin G domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp
SGFNKVDINYRASITQMRELIMNSASCKQFIKFKCKGSPIFNSPTGPPYV
SWMGGDDVAHFYWGGALDNRGYCSCGVKSDCRVGGRLTGQYCNCDSLSKF
QDVEDEGNFTIKEHLPVRAVNFMGKVLKNSVTALLRVGHLRCQGFGSHEI
AATFRKPYSYLSVFHPDQPFDNVQAGEISFDFKTSEAYNYMTVAHAIGPF
SGDYIKIMIWSKTMMRVHLNLGFGDLKQDVDISRTGRTLDDNEWHEFSVM
FNPKEMNVTLDGVRMIQGLPLQAEPVFFNVDATPVYIGGSYHDIFGFVGC
IRSLYVNGRIFDISNLAVGKENEGIYSGCGSACPLLNRPCNYGECMDQYD
SFKCNCSVSPFGGKFCQNETRPMTFGGGSYISYNMVNVNHTRPLATAKIV
IGFKTTTPNVGLAQLEGNHSRHFSLALIDGYATLFWNLKIKKEDGSSGTL
EETATEVIQITKRRLNNDRHNVIKLIISSRQIKISVPNYGLSASGNVTEV
PVFNERGDIIGMELQEFERPTKVTIGRVKDIKMNVGSINLPLTYQGCMSG
AKMVYTPHKSKKDPFPESRELDFFKMMEEYQSGGGSSNNQEQPLLEGSFP
SSTGEAGCGADLPTPGELPTVGPAKQFFTKSPGLDNSVRIEETDWVNQMM
LVACIIILTALILGFLYVLYSKAAKNYQEYERIHRAQKPRAAQPMKKMQA
MASGQQQQPSYEKQNLLNVTEEPEDQSGGGDGMYL
Run BLAST on NCBI

transcript from alignment at sc0000108:500852..504759-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010654 ID=TCONS_00010654|Name=TCONS_00010654|organism=Clytia hemisphaerica|type=transcript|length=3908bp|location=Sequence derived from alignment at sc0000108:500852..504759- (Clytia hemisphaerica)
TCAGGTTTCAACAAAGTGGATATCAACTACCGAGCGAGTATTACCCAAAT
GCGCGAGTTGATTATGAACAGTGCTAGTTGTAAACAGTTCATCAAGTTCA
AATGTAAAGGCTCGCCAATTTTCAATTCGCCGACTGGTCCACCTTACGTA
AGTTTAATCCGATGAGAAATGACACAGCCTGAGCTTTCACGTCGTATATT
ATTCTTACTTTTCAAGATAGATTTGAAGACATCTTAAATTTCAAACTTTT
CATATTTATACATCTACTCCACCACCCGTTAGGCTTTCATAATGTAAAAT
TGCATTTATATTTTTCAACAAAACTTCTTTGTTTTTCTGAATTAAACAGG
TCAGTTGGATGGGCGGTGATGACGTGGCGCATTTCTATTGGGGTGGAGCC
TTAGATAACCGAGGTTATTGCTCATGTGGAGTAAAGAGTGATTGTAGAGT
GGGCGGTCGTCTCACTGGTCAATACTGTAATTGTGATTCATTGAGCAAAT
TCCAAGATGTGGAAGATGAAGGCAACTTCACCATCAAAGAACATCTTCCT
GTCCGTGCTGTCAATTTCATGGGAAAAGTTTTAAAGAATTCGGTCACAGC
TTTGTTACGAGTTGGGCACTTAAGATGTCAAGGATTCGGGTCACATGAAA
TTGCCGCAACTTTCCGTAAACCGTATTCTTACTTATCCGTTTTCCATCCG
GACCAACCGTTCGATAATGTGCAAGCTGGTGAAATTTCTTTCGATTTCAA
AACAAGTGAAGCATATAATTACATGACAGTCGCACACGCTATTGGTCCAT
TCTCTGGAGATTACATCAAAATTATGATCTGGTCTAAAACGATGATGAGA
GTTCATCTGAATCTTGGATTTGGTGATCTCAAGCAGGATGTTGATATCTC
GCGGACAGGGCGGACGCTTGATGACAACGAGTGGCATGAATTTAGTGTGA
TGTTCAACCCGAAAGAGATGAATGTTACTCTTGACGGTGTACGCATGATC
CAAGGGCTTCCACTTCAAGCAGAACCTGTCTTCTTTAATGTAGATGCAAC
TCCCGTATATATCGGTGGCAGTTATCATGATATTTTTGGATTCGTTGGTT
GTATTAGAAGTCTGGTAAGTATTTTGTATCAAATGAAAAATTCCAAAGTA
ACAAAGTCTGCGACTGAAGTCAAATGTGACCCAGAGGCTATCTACACGAA
GGTGGGGGAGGGCGTCACTTTCCTCCTTGGATTAATCCATTTACCCTTGA
TCTTTTTTCTTTAAAATTGCAGTAGTTATTAAATTATAATTTTATTTTTT
AGTATGTTAATGGTCGTATCTTCGACATCAGTAATTTGGCAGTCGGAAAA
GAAAATGAAGGAATCTATTCTGGATGTGGGTCAGCCTGTCCATTATTGAA
TAGACCATGCAATTATGGAGAATGTATGGACCAGTATGATTCGTTTAAGT
GTAATTGTTCAGTCTCACCGTTCGGTGGCAAGTTTTGCCAAAATGGTAAG
TGTAAATACATCCCGTAGTTTTTCATCAAATCAAAGCTCATTAATTGGTT
GAATAATAGATAAGAGTTCATGAATTTCAAAGTCAATTTGAATGATGACA
ATAAAATCAATTTCTAATGTTTTTCTCGAGTAGGCTAACCTACTTTATAA
GGATTCGTGCATCTGTTATATGCTTAATACACAAATCTGTACAAATTCGA
GAAAAACGTTAAAAATTGATTTTATTGTCATCATTCAAATTGACTTTGAA
ATTCATGAACTCTTATCTATTATTGTTGCCTATGTAAACGCAAAAGAGTG
TTCAACCATAAAAAAAATTAATTATTGCAGTGACGTAGAAAAATATCATG
TACTCAAAACACGAATTCAGCTGGAACACAGCGTTGTTTTAACGTTCAAA
TAACGTTATTTGGACGTTATGAATGTCACATGGACGATGTTTTGACGTTG
TGTTCCGTCTGGGAATATTATGTTATAGCAAAACAGGGGTTTAATGGGTG
TTCCCTTTCCCTGTCTTTATGGTTAAANGAATACTATATCATAGCAAAAC
AGGGGTTTAATAGGTGTTCCCTTTCCCTGCCTTTATGGTCAAGATAATGT
TTAAATTTTCTTTATGATTAGAAACTCGACCGATGACGTTCGGAGGAGGT
AGTTACATTTCATACAATATGGTCAACGTCAACCACACGCGACCGCTTGC
CACCGCAAAAATAGTGATCGGCTTCAAGACTACCACACCAAACGTTGGTT
TGGCGCAACTCGAAGGAAACCATTCCCGGCATTTCTCTTTAGCGCTTATA
GATGGGTACGCAACTCTCTTTTGGAATCTCAAAATCAAAAAAGAAGATGG
TTCGTCAGGGACGCTTGAGGAGACAGCAACTGAGGTTATACAGATCACAA
AACGCAGGCTGAACAATGATAGACATAACGTTATTAAGCTTATCATTAGC
AGTCGTCAGATCAAAATATCAGTTCCGAATTATGGGCTTTCCGCATCTGG
AAACGTTACCGAAGTTCCGGTATTCAATGAACGTGGTGACATCATCGGTA
TGGAACTTCAAGAATTTGAGCGTCCTACCAAAGTGACCATTGGCCGTGTA
AAAGATATCAAGATGAATGTTGGATCAATAAATCTTCCATTAACATACCA
AGGATGTATGAGTGGTGCCAAAATGGTCTATACACCTCACAAGTCGAAGA
AAGATCCTTTCCCAGAATCGAGGGAGTTGGATTTCTTTAAAATGATGGAA
GAATATCAATCGGGTGGAGGGAGCTCCAATAACCAAGAACAACCCTTATT
GGAGGGAAGTTTCCCTTCATCTACTGGTGAAGCTGGATGTGGTGCAGATC
TACCTACTCCGGGTAAGCGTCTATGCCACGCATCCCCGGAATTGATTTTG
TAAATAATTCTCGTTCCCTGTCTTTGTGTTTTTAAGTTTCAGAAACTCGA
TAAGATGTGTTTTCTACATTTATTAATGCTTCTACTATTTTTGATCTCCC
CGATCCATTTACATAAATGTTGAGAAGGCTAAAATACTGAAAAACAAAAC
TCCTATACCCCAAAATAAATGTATAATTTTTGGTTTTCTGAAAATCGAAT
TCAACAAAAAAGATCGTAAAAGAATAGACTACATCTAGTGTTGTAATCCA
AGTAACTTATATCTACTTTCGAACCAATCACATGCGGTATAGTCCCTCAA
AAGATGTTACGTATTGTAAGGGTTAGCCCCCTTACTATGTTTCCTTCATT
ATAAGATCAGATAAACTATATGTATTTGATTTCTAAATTTCAGGAGAACT
TCCAACCGTTGGTCCAGCGAAGCAATTCTTCACAAAATCTCCTGGTCTCG
ATAACTCTGTTAGAATCGAAGAGACTGATTGGGTAAACCAAATGATGTTA
GTCGCTTGTATTATTATCCTCACAGCTCTGATACTCGGCTTTCTATACGT
TCTCTACTCCAAGGCCGCCAAGAACTATCAAGAGTACGAGCGTATACATC
GTGCGCAAAAACCACGCGCCGCGCAACCCATGAAAAAGATGCAAGCGATG
GCTTCAGGTCAGCAACAGCAACCATCTTACGAAAAACAGAACTTATTGAA
TGTTACCGAAGAACCTGAAGACCAAAGTGGTGGTGGTGATGGAATGTATT
TATAAAAAAAGAATTTTCGAAAGCAGAGGAATCCTTGAAAATTTTATTGA
ACGATTAGGCTACGTTCTTCTTTAAGAAGCTCGTAAATTCACTTTTGACG
AAGGTTTGTTTGATATTTGACGGAGCTGTACGTAACACAGACACTGTAGA
GACACTTTAACGATGAATTCAATGATAACTATTTGCTTCGGATGATGATG
GAAAGGATCATAGAATCAACTAAGTCCAGACAGAATTGAATGCGAAGGCT
TTTCTAGA

Coding sequence (CDS) from alignment at sc0000108:500852..504759-

>TCONS_00010654 ID=TCONS_00010654|Name=TCONS_00010654|organism=Clytia hemisphaerica|type=CDS|length=11040bp|location=Sequence derived from alignment at sc0000108:500852..504759- (Clytia hemisphaerica)
GAGAACTTCCAACCGTTGGTCCAGCGAAGCAATTCTTCACAAAATCTCCT
GGTCTCGATAACTCTGTTAGAATCGAAGAGACTGATTGGGTAAACCAAAT
GATGTTAGTCGCTTGTATTATTATCCTCACAGCTCTGATACTCGGCTTTC
TATACGTTCTCTACTCCAAGGCCGCCAAGAACTATCAAGAGTACGAGCGT
ATACATCGTGCGCAAAAACCACGCGCCGCGCAACCCATGAAAAAGATGCA
AGCGATGGCTTCAGGTCAGCAACAGCAACCATCTTACGAAAAACAGAACT
TATTGAATGTTACCGAAGAACCTGAAGACCAAAGTGGTGGTGGTGATGGA
ATGTATTTATAAAAACTCGACCGATGACGTTCGGAGGAGGTAGTTACATT
TCATACAATATGGTCAACGTCAACCACACGCGACCGCTTGCCACCGCAAA
AATAGTGATCGGCTTCAAGACTACCACACCAAACGTTGGTTTGGCGCAAC
TCGAAGGAAACCATTCCCGGCATTTCTCTTTAGCGCTTATAGATGGGTAC
GCAACTCTCTTTTGGAATCTCAAAATCAAAAAAGAAGATGGTTCGTCAGG
GACGCTTGAGGAGACAGCAACTGAGGTTATACAGATCACAAAACGCAGGC
TGAACAATGATAGACATAACGTTATTAAGCTTATCATTAGCAGTCGTCAG
ATCAAAATATCAGTTCCGAATTATGGGCTTTCCGCATCTGGAAACGTTAC
CGAAGTTCCGGTATTCAATGAACGTGGTGACATCATCGGTATGGAACTTC
AAGAATTTGAGCGTCCTACCAAAGTGACCATTGGCCGTGTAAAAGATATC
AAGATGAATGTTGGATCAATAAATCTTCCATTAACATACCAAGGATGTAT
GAGTGGTGCCAAAATGGTCTATACACCTCACAAGTCGAAGAAAGATCCTT
TCCCAGAATCGAGGGAGTTGGATTTCTTTAAAATGATGGAAGAATATCAA
TCGGGTGGAGGGAGCTCCAATAACCAAGAACAACCCTTATTGGAGGGAAG
TTTCCCTTCATCTACTGGTGAAGCTGGATGTGGTGCAGATCTACCTACTC
CGGTATGTTAATGGTCGTATCTTCGACATCAGTAATTTGGCAGTCGGAAA
AGAAAATGAAGGAATCTATTCTGGATGTGGGTCAGCCTGTCCATTATTGA
ATAGACCATGCAATTATGGAGAATGTATGGACCAGTATGATTCGTTTAAG
TGTAATTGTTCAGTCTCACCGTTCGGTGGCAAGTTTTGCCAAAATGGTCA
GTTGGATGGGCGGTGATGACGTGGCGCATTTCTATTGGGGTGGAGCCTTA
GATAACCGAGGTTATTGCTCATGTGGAGTAAAGAGTGATTGTAGAGTGGG
CGGTCGTCTCACTGGTCAATACTGTAATTGTGATTCATTGAGCAAATTCC
AAGATGTGGAAGATGAAGGCAACTTCACCATCAAAGAACATCTTCCTGTC
CGTGCTGTCAATTTCATGGGAAAAGTTTTAAAGAATTCGGTCACAGCTTT
GTTACGAGTTGGGCACTTAAGATGTCAAGGATTCGGGTCACATGAAATTG
CCGCAACTTTCCGTAAACCGTATTCTTACTTATCCGTTTTCCATCCGGAC
CAACCGTTCGATAATGTGCAAGCTGGTGAAATTTCTTTCGATTTCAAAAC
AAGTGAAGCATATAATTACATGACAGTCGCACACGCTATTGGTCCATTCT
CTGGAGATTACATCAAAATTATGATCTGGTCTAAAACGATGATGAGAGTT
CATCTGAATCTTGGATTTGGTGATCTCAAGCAGGATGTTGATATCTCGCG
GACAGGGCGGACGCTTGATGACAACGAGTGGCATGAATTTAGTGTGATGT
TCAACCCGAAAGAGATGAATGTTACTCTTGACGGTGTACGCATGATCCAA
GGGCTTCCACTTCAAGCAGAACCTGTCTTCTTTAATGTAGATGCAACTCC
CGTATATATCGGTGGCAGTTATCATGATATTTTTGGATTCGTTGGTTGTA
TTAGAAGTCTGTCAGGTTTCAACAAAGTGGATATCAACTACCGAGCGAGT
ATTACCCAAATGCGCGAGTTGATTATGAACAGTGCTAGTTGTAAACAGTT
CATCAAGTTCAAATGTAAAGGCTCGCCAATTTTCAATTCGCCGACTGGTC
CACCTTACGAGAACTTCCAACCGTTGGTCCAGCGAAGCAATTCTTCACAA
AATCTCCTGGTCTCGATAACTCTGTTAGAATCGAAGAGACTGATTGGGTA
AACCAAATGATGTTAGTCGCTTGTATTATTATCCTCACAGCTCTGATACT
CGGCTTTCTATACGTTCTCTACTCCAAGGCCGCCAAGAACTATCAAGAGT
ACGAGCGTATACATCGTGCGCAAAAACCACGCGCCGCGCAACCCATGAAA
AAGATGCAAGCGATGGCTTCAGGTCAGCAACAGCAACCATCTTACGAAAA
ACAGAACTTATTGAATGTTACCGAAGAACCTGAAGACCAAAGTGGTGGTG
GTGATGGAATGTATTTATAAAAACTCGACCGATGACGTTCGGAGGAGGTA
GTTACATTTCATACAATATGGTCAACGTCAACCACACGCGACCGCTTGCC
ACCGCAAAAATAGTGATCGGCTTCAAGACTACCACACCAAACGTTGGTTT
GGCGCAACTCGAAGGAAACCATTCCCGGCATTTCTCTTTAGCGCTTATAG
ATGGGTACGCAACTCTCTTTTGGAATCTCAAAATCAAAAAAGAAGATGGT
TCGTCAGGGACGCTTGAGGAGACAGCAACTGAGGTTATACAGATCACAAA
ACGCAGGCTGAACAATGATAGACATAACGTTATTAAGCTTATCATTAGCA
GTCGTCAGATCAAAATATCAGTTCCGAATTATGGGCTTTCCGCATCTGGA
AACGTTACCGAAGTTCCGGTATTCAATGAACGTGGTGACATCATCGGTAT
GGAACTTCAAGAATTTGAGCGTCCTACCAAAGTGACCATTGGCCGTGTAA
AAGATATCAAGATGAATGTTGGATCAATAAATCTTCCATTAACATACCAA
GGATGTATGAGTGGTGCCAAAATGGTCTATACACCTCACAAGTCGAAGAA
AGATCCTTTCCCAGAATCGAGGGAGTTGGATTTCTTTAAAATGATGGAAG
AATATCAATCGGGTGGAGGGAGCTCCAATAACCAAGAACAACCCTTATTG
GAGGGAAGTTTCCCTTCATCTACTGGTGAAGCTGGATGTGGTGCAGATCT
ACCTACTCCGGTATGTTAATGGTCGTATCTTCGACATCAGTAATTTGGCA
GTCGGAAAAGAAAATGAAGGAATCTATTCTGGATGTGGGTCAGCCTGTCC
ATTATTGAATAGACCATGCAATTATGGAGAATGTATGGACCAGTATGATT
CGTTTAAGTGTAATTGTTCAGTCTCACCGTTCGGTGGCAAGTTTTGCCAA
AATGGTCAGTTGGATGGGCGGTGATGACGTGGCGCATTTCTATTGGGGTG
GAGCCTTAGATAACCGAGGTTATTGCTCATGTGGAGTAAAGAGTGATTGT
AGAGTGGGCGGTCGTCTCACTGGTCAATACTGTAATTGTGATTCATTGAG
CAAATTCCAAGATGTGGAAGATGAAGGCAACTTCACCATCAAAGAACATC
TTCCTGTCCGTGCTGTCAATTTCATGGGAAAAGTTTTAAAGAATTCGGTC
ACAGCTTTGTTACGAGTTGGGCACTTAAGATGTCAAGGATTCGGGTCACA
TGAAATTGCCGCAACTTTCCGTAAACCGTATTCTTACTTATCCGTTTTCC
ATCCGGACCAACCGTTCGATAATGTGCAAGCTGGTGAAATTTCTTTCGAT
TTCAAAACAAGTGAAGCATATAATTACATGACAGTCGCACACGCTATTGG
TCCATTCTCTGGAGATTACATCAAAATTATGATCTGGTCTAAAACGATGA
TGAGAGTTCATCTGAATCTTGGATTTGGTGATCTCAAGCAGGATGTTGAT
ATCTCGCGGACAGGGCGGACGCTTGATGACAACGAGTGGCATGAATTTAG
TGTGATGTTCAACCCGAAAGAGATGAATGTTACTCTTGACGGTGTACGCA
TGATCCAAGGGCTTCCACTTCAAGCAGAACCTGTCTTCTTTAATGTAGAT
GCAACTCCCGTATATATCGGTGGCAGTTATCATGATATTTTTGGATTCGT
TGGTTGTATTAGAAGTCTGTCAGGTTTCAACAAAGTGGATATCAACTACC
GAGCGAGTATTACCCAAATGCGCGAGTTGATTATGAACAGTGCTAGTTGT
AAACAGTTCATCAAGTTCAAATGTAAAGGCTCGCCAATTTTCAATTCGCC
GACTGGTCCACCTTACGAGAACTTCCAACCGTTGGTCCAGCGAAGCAATT
CTTCACAAAATCTCCTGGTCTCGATAACTCTGTTAGAATCGAAGAGACTG
ATTGGGTAAACCAAATGATGTTAGTCGCTTGTATTATTATCCTCACAGCT
CTGATACTCGGCTTTCTATACGTTCTCTACTCCAAGGCCGCCAAGAACTA
TCAAGAGTACGAGCGTATACATCGTGCGCAAAAACCACGCGCCGCGCAAC
CCATGAAAAAGATGCAAGCGATGGCTTCAGGTCAGCAACAGCAACCATCT
TACGAAAAACAGAACTTATTGAATGTTACCGAAGAACCTGAAGACCAAAG
TGGTGGTGGTGATGGAATGTATTTATAAAAACTCGACCGATGACGTTCGG
AGGAGGTAGTTACATTTCATACAATATGGTCAACGTCAACCACACGCGAC
CGCTTGCCACCGCAAAAATAGTGATCGGCTTCAAGACTACCACACCAAAC
GTTGGTTTGGCGCAACTCGAAGGAAACCATTCCCGGCATTTCTCTTTAGC
GCTTATAGATGGGTACGCAACTCTCTTTTGGAATCTCAAAATCAAAAAAG
AAGATGGTTCGTCAGGGACGCTTGAGGAGACAGCAACTGAGGTTATACAG
ATCACAAAACGCAGGCTGAACAATGATAGACATAACGTTATTAAGCTTAT
CATTAGCAGTCGTCAGATCAAAATATCAGTTCCGAATTATGGGCTTTCCG
CATCTGGAAACGTTACCGAAGTTCCGGTATTCAATGAACGTGGTGACATC
ATCGGTATGGAACTTCAAGAATTTGAGCGTCCTACCAAAGTGACCATTGG
CCGTGTAAAAGATATCAAGATGAATGTTGGATCAATAAATCTTCCATTAA
CATACCAAGGATGTATGAGTGGTGCCAAAATGGTCTATACACCTCACAAG
TCGAAGAAAGATCCTTTCCCAGAATCGAGGGAGTTGGATTTCTTTAAAAT
GATGGAAGAATATCAATCGGGTGGAGGGAGCTCCAATAACCAAGAACAAC
CCTTATTGGAGGGAAGTTTCCCTTCATCTACTGGTGAAGCTGGATGTGGT
GCAGATCTACCTACTCCGGTATGTTAATGGTCGTATCTTCGACATCAGTA
ATTTGGCAGTCGGAAAAGAAAATGAAGGAATCTATTCTGGATGTGGGTCA
GCCTGTCCATTATTGAATAGACCATGCAATTATGGAGAATGTATGGACCA
GTATGATTCGTTTAAGTGTAATTGTTCAGTCTCACCGTTCGGTGGCAAGT
TTTGCCAAAATGGTCAGTTGGATGGGCGGTGATGACGTGGCGCATTTCTA
TTGGGGTGGAGCCTTAGATAACCGAGGTTATTGCTCATGTGGAGTAAAGA
GTGATTGTAGAGTGGGCGGTCGTCTCACTGGTCAATACTGTAATTGTGAT
TCATTGAGCAAATTCCAAGATGTGGAAGATGAAGGCAACTTCACCATCAA
AGAACATCTTCCTGTCCGTGCTGTCAATTTCATGGGAAAAGTTTTAAAGA
ATTCGGTCACAGCTTTGTTACGAGTTGGGCACTTAAGATGTCAAGGATTC
GGGTCACATGAAATTGCCGCAACTTTCCGTAAACCGTATTCTTACTTATC
CGTTTTCCATCCGGACCAACCGTTCGATAATGTGCAAGCTGGTGAAATTT
CTTTCGATTTCAAAACAAGTGAAGCATATAATTACATGACAGTCGCACAC
GCTATTGGTCCATTCTCTGGAGATTACATCAAAATTATGATCTGGTCTAA
AACGATGATGAGAGTTCATCTGAATCTTGGATTTGGTGATCTCAAGCAGG
ATGTTGATATCTCGCGGACAGGGCGGACGCTTGATGACAACGAGTGGCAT
GAATTTAGTGTGATGTTCAACCCGAAAGAGATGAATGTTACTCTTGACGG
TGTACGCATGATCCAAGGGCTTCCACTTCAAGCAGAACCTGTCTTCTTTA
ATGTAGATGCAACTCCCGTATATATCGGTGGCAGTTATCATGATATTTTT
GGATTCGTTGGTTGTATTAGAAGTCTGTCAGGTTTCAACAAAGTGGATAT
CAACTACCGAGCGAGTATTACCCAAATGCGCGAGTTGATTATGAACAGTG
CTAGTTGTAAACAGTTCATCAAGTTCAAATGTAAAGGCTCGCCAATTTTC
AATTCGCCGACTGGTCCACCTTACGAGAACTTCCAACCGTTGGTCCAGCG
AAGCAATTCTTCACAAAATCTCCTGGTCTCGATAACTCTGTTAGAATCGA
AGAGACTGATTGGGTAAACCAAATGATGTTAGTCGCTTGTATTATTATCC
TCACAGCTCTGATACTCGGCTTTCTATACGTTCTCTACTCCAAGGCCGCC
AAGAACTATCAAGAGTACGAGCGTATACATCGTGCGCAAAAACCACGCGC
CGCGCAACCCATGAAAAAGATGCAAGCGATGGCTTCAGGTCAGCAACAGC
AACCATCTTACGAAAAACAGAACTTATTGAATGTTACCGAAGAACCTGAA
GACCAAAGTGGTGGTGGTGATGGAATGTATTTATAAAAACTCGACCGATG
ACGTTCGGAGGAGGTAGTTACATTTCATACAATATGGTCAACGTCAACCA
CACGCGACCGCTTGCCACCGCAAAAATAGTGATCGGCTTCAAGACTACCA
CACCAAACGTTGGTTTGGCGCAACTCGAAGGAAACCATTCCCGGCATTTC
TCTTTAGCGCTTATAGATGGGTACGCAACTCTCTTTTGGAATCTCAAAAT
CAAAAAAGAAGATGGTTCGTCAGGGACGCTTGAGGAGACAGCAACTGAGG
TTATACAGATCACAAAACGCAGGCTGAACAATGATAGACATAACGTTATT
AAGCTTATCATTAGCAGTCGTCAGATCAAAATATCAGTTCCGAATTATGG
GCTTTCCGCATCTGGAAACGTTACCGAAGTTCCGGTATTCAATGAACGTG
GTGACATCATCGGTATGGAACTTCAAGAATTTGAGCGTCCTACCAAAGTG
ACCATTGGCCGTGTAAAAGATATCAAGATGAATGTTGGATCAATAAATCT
TCCATTAACATACCAAGGATGTATGAGTGGTGCCAAAATGGTCTATACAC
CTCACAAGTCGAAGAAAGATCCTTTCCCAGAATCGAGGGAGTTGGATTTC
TTTAAAATGATGGAAGAATATCAATCGGGTGGAGGGAGCTCCAATAACCA
AGAACAACCCTTATTGGAGGGAAGTTTCCCTTCATCTACTGGTGAAGCTG
GATGTGGTGCAGATCTACCTACTCCGGTATGTTAATGGTCGTATCTTCGA
CATCAGTAATTTGGCAGTCGGAAAAGAAAATGAAGGAATCTATTCTGGAT
GTGGGTCAGCCTGTCCATTATTGAATAGACCATGCAATTATGGAGAATGT
ATGGACCAGTATGATTCGTTTAAGTGTAATTGTTCAGTCTCACCGTTCGG
TGGCAAGTTTTGCCAAAATGGTCAGTTGGATGGGCGGTGATGACGTGGCG
CATTTCTATTGGGGTGGAGCCTTAGATAACCGAGGTTATTGCTCATGTGG
AGTAAAGAGTGATTGTAGAGTGGGCGGTCGTCTCACTGGTCAATACTGTA
ATTGTGATTCATTGAGCAAATTCCAAGATGTGGAAGATGAAGGCAACTTC
ACCATCAAAGAACATCTTCCTGTCCGTGCTGTCAATTTCATGGGAAAAGT
TTTAAAGAATTCGGTCACAGCTTTGTTACGAGTTGGGCACTTAAGATGTC
AAGGATTCGGGTCACATGAAATTGCCGCAACTTTCCGTAAACCGTATTCT
TACTTATCCGTTTTCCATCCGGACCAACCGTTCGATAATGTGCAAGCTGG
TGAAATTTCTTTCGATTTCAAAACAAGTGAAGCATATAATTACATGACAG
TCGCACACGCTATTGGTCCATTCTCTGGAGATTACATCAAAATTATGATC
TGGTCTAAAACGATGATGAGAGTTCATCTGAATCTTGGATTTGGTGATCT
CAAGCAGGATGTTGATATCTCGCGGACAGGGCGGACGCTTGATGACAACG
AGTGGCATGAATTTAGTGTGATGTTCAACCCGAAAGAGATGAATGTTACT
CTTGACGGTGTACGCATGATCCAAGGGCTTCCACTTCAAGCAGAACCTGT
CTTCTTTAATGTAGATGCAACTCCCGTATATATCGGTGGCAGTTATCATG
ATATTTTTGGATTCGTTGGTTGTATTAGAAGTCTGTCAGGTTTCAACAAA
GTGGATATCAACTACCGAGCGAGTATTACCCAAATGCGCGAGTTGATTAT
GAACAGTGCTAGTTGTAAACAGTTCATCAAGTTCAAATGTAAAGGCTCGC
CAATTTTCAATTCGCCGACTGGTCCACCTTACGAGAACTTCCAACCGTTG
GTCCAGCGAAGCAATTCTTCACAAAATCTCCTGGTCTCGATAACTCTGTT
AGAATCGAAGAGACTGATTGGGTAAACCAAATGATGTTAGTCGCTTGTAT
TATTATCCTCACAGCTCTGATACTCGGCTTTCTATACGTTCTCTACTCCA
AGGCCGCCAAGAACTATCAAGAGTACGAGCGTATACATCGTGCGCAAAAA
CCACGCGCCGCGCAACCCATGAAAAAGATGCAAGCGATGGCTTCAGGTCA
GCAACAGCAACCATCTTACGAAAAACAGAACTTATTGAATGTTACCGAAG
AACCTGAAGACCAAAGTGGTGGTGGTGATGGAATGTATTTATAAAAACTC
GACCGATGACGTTCGGAGGAGGTAGTTACATTTCATACAATATGGTCAAC
GTCAACCACACGCGACCGCTTGCCACCGCAAAAATAGTGATCGGCTTCAA
GACTACCACACCAAACGTTGGTTTGGCGCAACTCGAAGGAAACCATTCCC
GGCATTTCTCTTTAGCGCTTATAGATGGGTACGCAACTCTCTTTTGGAAT
CTCAAAATCAAAAAAGAAGATGGTTCGTCAGGGACGCTTGAGGAGACAGC
AACTGAGGTTATACAGATCACAAAACGCAGGCTGAACAATGATAGACATA
ACGTTATTAAGCTTATCATTAGCAGTCGTCAGATCAAAATATCAGTTCCG
AATTATGGGCTTTCCGCATCTGGAAACGTTACCGAAGTTCCGGTATTCAA
TGAACGTGGTGACATCATCGGTATGGAACTTCAAGAATTTGAGCGTCCTA
CCAAAGTGACCATTGGCCGTGTAAAAGATATCAAGATGAATGTTGGATCA
ATAAATCTTCCATTAACATACCAAGGATGTATGAGTGGTGCCAAAATGGT
CTATACACCTCACAAGTCGAAGAAAGATCCTTTCCCAGAATCGAGGGAGT
TGGATTTCTTTAAAATGATGGAAGAATATCAATCGGGTGGAGGGAGCTCC
AATAACCAAGAACAACCCTTATTGGAGGGAAGTTTCCCTTCATCTACTGG
TGAAGCTGGATGTGGTGCAGATCTACCTACTCCGGTATGTTAATGGTCGT
ATCTTCGACATCAGTAATTTGGCAGTCGGAAAAGAAAATGAAGGAATCTA
TTCTGGATGTGGGTCAGCCTGTCCATTATTGAATAGACCATGCAATTATG
GAGAATGTATGGACCAGTATGATTCGTTTAAGTGTAATTGTTCAGTCTCA
CCGTTCGGTGGCAAGTTTTGCCAAAATGGTCAGTTGGATGGGCGGTGATG
ACGTGGCGCATTTCTATTGGGGTGGAGCCTTAGATAACCGAGGTTATTGC
TCATGTGGAGTAAAGAGTGATTGTAGAGTGGGCGGTCGTCTCACTGGTCA
ATACTGTAATTGTGATTCATTGAGCAAATTCCAAGATGTGGAAGATGAAG
GCAACTTCACCATCAAAGAACATCTTCCTGTCCGTGCTGTCAATTTCATG
GGAAAAGTTTTAAAGAATTCGGTCACAGCTTTGTTACGAGTTGGGCACTT
AAGATGTCAAGGATTCGGGTCACATGAAATTGCCGCAACTTTCCGTAAAC
CGTATTCTTACTTATCCGTTTTCCATCCGGACCAACCGTTCGATAATGTG
CAAGCTGGTGAAATTTCTTTCGATTTCAAAACAAGTGAAGCATATAATTA
CATGACAGTCGCACACGCTATTGGTCCATTCTCTGGAGATTACATCAAAA
TTATGATCTGGTCTAAAACGATGATGAGAGTTCATCTGAATCTTGGATTT
GGTGATCTCAAGCAGGATGTTGATATCTCGCGGACAGGGCGGACGCTTGA
TGACAACGAGTGGCATGAATTTAGTGTGATGTTCAACCCGAAAGAGATGA
ATGTTACTCTTGACGGTGTACGCATGATCCAAGGGCTTCCACTTCAAGCA
GAACCTGTCTTCTTTAATGTAGATGCAACTCCCGTATATATCGGTGGCAG
TTATCATGATATTTTTGGATTCGTTGGTTGTATTAGAAGTCTGTCAGGTT
TCAACAAAGTGGATATCAACTACCGAGCGAGTATTACCCAAATGCGCGAG
TTGATTATGAACAGTGCTAGTTGTAAACAGTTCATCAAGTTCAAATGTAA
AGGCTCGCCAATTTTCAATTCGCCGACTGGTCCACCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005970XLOC_005970Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Laminin G domain containing proteinTCONS_00010654-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010654-exon-sc0000108-1575043694:504613..504759TCONS_00010654-exon-sc0000108-1575043694:504613..504759Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1575043694:503646..504410TCONS_00010654-exon-sc0000108-1575043694:503646..504410Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1575043694:503265..503457TCONS_00010654-exon-sc0000108-1575043694:503265..503457Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1575043694:501898..502638TCONS_00010654-exon-sc0000108-1575043694:501898..502638Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1575043694:500852..501466TCONS_00010654-exon-sc0000108-1575043694:500852..501466Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1510915933:504613..504759TCONS_00010654-exon-sc0000108-1510915933:504613..504759Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1510915933:503646..504410TCONS_00010654-exon-sc0000108-1510915933:503646..504410Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1510915933:503265..503457TCONS_00010654-exon-sc0000108-1510915933:503265..503457Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1510915933:501898..502638TCONS_00010654-exon-sc0000108-1510915933:501898..502638Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1510915933:500852..501466TCONS_00010654-exon-sc0000108-1510915933:500852..501466Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1491911889:504613..504759TCONS_00010654-exon-sc0000108-1491911889:504613..504759Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1491911889:503646..504410TCONS_00010654-exon-sc0000108-1491911889:503646..504410Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1491911889:503265..503457TCONS_00010654-exon-sc0000108-1491911889:503265..503457Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1491911889:501898..502638TCONS_00010654-exon-sc0000108-1491911889:501898..502638Clytia hemisphaericaexon
TCONS_00010654-exon-sc0000108-1491911889:500852..501466TCONS_00010654-exon-sc0000108-1491911889:500852..501466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:500852..504759 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0787694	0.0614501	0.0356747	0.0349021	0.08498	0.0335762	4.71921	5.0438	6.25276	10.4747	18.2113	2.32922	72.2313	66.9828	43.6812	52.1758	55.5603	47.3593	57.0561	59.5999	59.876	66.3753	17.0335	26.1602	48.7976	55.3101	4.10432	7.07755	174.489	211.108
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013320ConA-like_dom
Blast
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BLAST of TCONS_00010654 vs. Swiss-Prot (Human)
Match: CNTP2 (Contactin-associated protein-like 2 OS=Homo sapiens GN=CNTNAP2 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.425e-44
Identity = 116/385 (30.13%), Postives = 191/385 (49.61%), Query Frame = 1 
Query:    7 FNKVDINYRASITQMRELIMNSASCKQFIKFKCKGSPIFNSPTGPPYVSWMGGDDVAHFYWGGALDNRGYCSCGVKSDCRVGGRLTGQYCNCDSLSKFQDVEDEGNFTIKEHLPVRAVNFMGKVLKNSVTALLRVGHLRCQGFGSHEIAATFRKPYSYLSVFHPDQPFDNVQAGEISFDFKTSEAYNYMTVAHAIGPFSGDYIKIMIWSKTMMRVHLNLGFGDLKQDVDISRTGRTLDDNEWHEFSVMFNPKEMNVTLDGV-RMIQGLPLQAEPVFFNVDATPVYIGGSYHDIFGFVGCIRSLYVNGRIFDISNLAVGKENEGIYSGCGSACPLLNRPC-NYGECMDQYDSFKCNCSVSPFGGKFCQNETRPMTFGGGSYISYNM 1155
            ++   + Y AS+ Q+  +  ++  C+Q++ + CK S + N+P G PY  W+G  +  H+YWGG+      C+CG++ +C         YCNCD+  K Q  +D G  + K+HLPV  V  +G   +    A L VG LRCQG  ++  AA+F  P SYL        F    + +ISF FKT   +              D+IK+ + S T +    ++G G ++    + R+   L+D++WH  +   N K+ ++ +D + + I+  P +          + +++GG+     GF+GCIRSL +NG   D+   A  K   G  SGC   C      C N G+C+++Y  + C+CS + + G FC  +     F  G ++ YN 
Sbjct:  658 YSVTQLVYSASMDQISAITDSAEYCEQYVSYFCKMSRLLNTPDGSPYTWWVGKANEKHYYWGGSGPGIQKCACGIERNCTD----PKYYCNCDADYK-QWRKDAGFLSYKDHLPVSQV-VVGDTDRQGSEAKLSVGPLRCQGDRNYWNAASFPNPSSYLHF----STFQGETSADISFYFKTLTPWGVFLENMG----KEDFIKLELKSATEVSFSFDVGNGPVEI---VVRSPTPLNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPTEGHTRL--ELYSQLFVGGAGGQQ-GFLGCIRSLRMNGVTLDLEERA--KVTSGFISGCSGHCTSYGTNCENGGKCLERYHGYSCDCSNTAYDGTFCNKDVGAF-FEEGMWLRYNF 1019
The following BLAST results are available for this feature:
BLAST of TCONS_00010654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTP21.425e-4430.13Contactin-associated protein-like 2 OS=Homo sapien... [more]
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