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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010650 ID=TCONS_00010650|Name=TCONS_00010650|organism=Clytia hemisphaerica|type=transcript|length=674bp
tgcttataaaaaaattataaagatcCTATATAAGACGAATCATGAACAAA
TTTCAAGTCCCAAAAGCATTTCATTTCGTAATTCATCAACAAGCAATCTA
CAACAGGAATCTGTTCATCTCACCCAAGATGAAAGTTTCAGTGTTGTTTT
GCTTGGTATGTGTGGCCATATTTGCGTTGTGTTTTCAAGAGAGTGAGGCC
AGACCTCGTGGAAGGCGAATCATGTGTTCGTCTAAGAGATGGCATAGTTC
AATTGGATGTCAACAAATTTCGCAATTGCGACAAATCCGAAGAGATATGA
GAAGTAATGATAAAGtcACAAAAATGATGATCACATTCCTTAAGCGACGT
ATACGACACTACCGACGACGTTATTAAATGACGACAAATTGCGATTGTTG
GACCAAACCCTGGATAACAAATGGCAAAATGATAAACGATGGAAAATGAA
TGCATGAATGAATAGATGAAGAAAACTCTGGATGAACAACAATAAACAAA
CGAATAACTGTTAAACTTATTCAAACTGGCTTGAACTGGTAGTTTGGTGA
TGATGGTACGCATGCGCTTCAAATAAGAAATTGGTAAATAATGTATAGTA
TTAGCCCCAACGTCCACATAATATTCATCACTCTTAATGTAGCAAACTTA
TGTCGAAAGCTTGAAGGAAGGAAT Run BLAST on NCBI protein sequence of TCONS_00010650-protein >TCONS_00010650-protein ID=TCONS_00010650-protein|Name=TCONS_00010650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MNKFQVPKAFHFVIHQQAIYNRNLFISPKMKVSVLFCLVCVAIFALCFQE
SEARPRGRRIMCSSKRWHSSIGCQQISQLRQIRRDMRSNDKVTKMMITFL
KRRIRHYRRRY Run BLAST on NCBI transcript from alignment at sc0000108:451058..452892- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010650 ID=TCONS_00010650|Name=TCONS_00010650|organism=Clytia hemisphaerica|type=transcript|length=1835bp|location=Sequence derived from alignment at sc0000108:451058..452892- (Clytia hemisphaerica)
TGCTTATAAAAAAATTATAAAGATCCTATATAAGACGAATCATGAACAAA
TTTCAAGTCCCAAAAGCATTTCATTTCGTAATTCATCAACAAGCAATCTA
CAACAGGAATCTGTTCATCTCACCCAAGATGAAAGTTTCAGTGTTGTTTT
GCTTGGTATGTGTGGCCATATTTGCGTTGTGTTTTCAAGAGAGTGAGGCC
AGACCTCGTGGAAGGCGAATCATGTGTTCGTCTAAGAGATGGCATAGTTC
AATTGGATGTCAACAAATTTCGCAATTGCGACAAATCCGAAGAGATATGA
GAAGTAATGATAAAGGTAAGTACTTTGCATTTGTCTAGATCCTGATTAAC
TGAGGACAAAGGTAAACTAAGCAAGCACTTTTGCTGTTCTCGATTTTTTC
GGGTTGAAATTGCGGGATATTCCAAACCGTTTCAGTCACTCCACCGTTCT
CGATAGAGTAAATACATAAGCCCGCTTGTATGGCGTTATTTGACAGCTGG
CACACAACGTTGTTTCAACGTTCATCTAACGTTATATGGACGTTGTGAAC
GTTAGATGGACGTTGAAATAACGTTGTGTGCTAGCTGTTTAAACACGATG
TCTTGATGCAGCTTATTGCATAAGTTTAGTTAAAAGTAATGGAGGTGTTT
ACTGTGTTCTTTGTTTCAAAGTCAACTACCTTAAGTGGATAAATTTTGGC
GTGGATTTAATTTGGCCATTGGCCAAAATACGATTTTTGGCGGGGATTTA
ATTTGGCGATAGATCAATTTCGTAAAATTTGGCGAGGATTTAATTTGGCG
ATAGATCAATTTCGTAAAATTTGGCGGGGATTTAATTTGGCGATAGATCA
ATTTCGTAAAATTTGGCGAGGATTTAATTTGGCGATTTGGAAATTTTGTC
GCACTGAAATGGGTGAAAATTACTTAAAAATATACTAAAAAGTTGTGATT
TTTCACATAATTCTCTTTTTGTTAAATTTGGCGGGGATTTGATTTGGCGA
ATTGCCGAATTTGGAAATTTTTGGCGAGGATTTAATTTGGCGAATTTTGG
CAAAATTCGCCAAATTCGCCAAATTTAATCCCCGCCAAAATTTATCCACT
TAAGGTACTTCTATTTTTTCCCCGTTAAACCCGTTAATTCGTCCCACATT
TTCTTTACCACTAATAGCAGTGAACGATAGCATTGTCTATCACTGGGATT
TATGGTGGATATCATCTTTCTTTTGACTGGGTTGAATTTTAGATAGGGTG
ATGAGTCAGGTGTGTGATCGAAATGTTTGACAATTTCATATTTTGTACGG
AAAGATGTATGTTTTTTGACCTTACCAAGCTGGCACACAACGTTGTTTCA
ACGTTCTAACGTTATATGGACGTTGTGAACGTTAGATAAACGTTGAAATA
ACGTTGTGTGCCAGATGGGTATCTTACTTGGCAAAACTTTCCACAAAGTT
AAAGATTTAGTTTTTTATCATTTTAGTCACAAAAATGATGATCACATTCC
TTAAGCGACGTATACGACACTACCGACGACGTTATTAAATGACGACAAAT
TGCGATTGTTGGACCAAACCCTGGATAACAAATGGCAAAATGATAAACGA
TGGAAAATGAATGCATGAATGAATAGATGAAGAAAACTCTGGATGAACAA
CAATAAACAAACGAATAACTGTTAAACTTATTCAAACTGGCTTGAACTGG
TAGTTTGGTGATGATGGTACGCATGCGCTTCAAATAAGAAATTGGTAAAT
AATGTATAGTATTAGCCCCAACGTCCACATAATATTCATCACTCTTAATG
TAGCAAACTTATGTCGAAAGCTTGAAGGAAGGAAT Coding sequence (CDS) from alignment at sc0000108:451058..452892- >TCONS_00010650 ID=TCONS_00010650|Name=TCONS_00010650|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0000108:451058..452892- (Clytia hemisphaerica)
TCACAAAAATGATGATCACATTCCTTAAGCGACGTATACGACACTACCGA
CGACGTTATTAAATGAACAAATTTCAAGTCCCAAAAGCATTTCATTTCGT
AATTCATCAACAAGCAATCTACAACAGGAATCTGTTCATCTCACCCAAGA
TGAAAGTTTCAGTGTTGTTTTGCTTGGTATGTGTGGCCATATTTGCGTTG
TGTTTTCAAGAGAGTGAGGCCAGACCTCGTGGAAGGCGAATCATGTGTTC
GTCTAAGAGATGGCATAGTTCAATTGGATGTCAACAAATTTCGCAATTGC
GACAAATCCGAAGAGATATGAGAAGTAATGATAAAGTCACAAAAATGATG
ATCACATTCCTTAAGCGACGTATACGACACTACCGACGACGTTATTAAAT
GAACAAATTTCAAGTCCCAAAAGCATTTCATTTCGTAATTCATCAACAAG
CAATCTACAACAGGAATCTGTTCATCTCACCCAAGATGAAAGTTTCAGTG
TTGTTTTGCTTGGTATGTGTGGCCATATTTGCGTTGTGTTTTCAAGAGAG
TGAGGCCAGACCTCGTGGAAGGCGAATCATGTGTTCGTCTAAGAGATGGC
ATAGTTCAATTGGATGTCAACAAATTTCGCAATTGCGACAAATCCGAAGA
GATATGAGAAGTAATGATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010650-exon-sc0000108-1575043694:452578..452892 | TCONS_00010650-exon-sc0000108-1575043694:452578..452892 | Clytia hemisphaerica | exon |
| TCONS_00010650-exon-sc0000108-1575043694:451058..451416 | TCONS_00010650-exon-sc0000108-1575043694:451058..451416 | Clytia hemisphaerica | exon |
| TCONS_00010650-exon-sc0000108-1510915933:452578..452892 | TCONS_00010650-exon-sc0000108-1510915933:452578..452892 | Clytia hemisphaerica | exon |
| TCONS_00010650-exon-sc0000108-1510915933:451058..451416 | TCONS_00010650-exon-sc0000108-1510915933:451058..451416 | Clytia hemisphaerica | exon |
| TCONS_00010650-exon-sc0000108-1491911889:452578..452892 | TCONS_00010650-exon-sc0000108-1491911889:452578..452892 | Clytia hemisphaerica | exon |
| TCONS_00010650-exon-sc0000108-1491911889:451058..451416 | TCONS_00010650-exon-sc0000108-1491911889:451058..451416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:451058..452892 - |
Blast
The following BLAST results are available for this feature:
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