TCONS_00010647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010647
Unique NameTCONS_00010647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010647 ID=TCONS_00010647|Name=TCONS_00010647|organism=Clytia hemisphaerica|type=transcript|length=268bp
ACGACATGAGTGATATTTTCACACCAGAAATTGTATCTAAAATGaaggaa
gatgtacAGAAGAGTGAGGAATTACAGAAGGACCAAGAGTCATTGCAAAG
CGAAAAATTACATAATGATGATAAATCACAGAAGAATTATCAAAAGAAGG
AAACTCACAAAAAGACGAAAAATTACTAAATGCCAAGGAATCACCGAAAC
ACGGAGAGTCTCGGAAAGACGAAAAATTGCAACATAGCCAGGAATCACCG
AAGAACGAAGGATCCTCG
Run BLAST on NCBI

transcript from alignment at sc0000108:67689..68173-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010647 ID=TCONS_00010647|Name=TCONS_00010647|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at sc0000108:67689..68173- (Clytia hemisphaerica)
ACGACATGAGTGATATTTTCACACCAGAAATTGTATCTAAAATGGTGCGT
ACAAGTTACATAGTTGGGGGTGTTATTTTCAAAAAAAATGGTCAAGATTT
GTCAAAAGTTGGTATTAAAAGATGAAAAAGTAATGTTAAAACCCAGTTGC
ACCGAATTTCAGACCCGTACTATTTTTACAATGTTAAAGACTTTTTTGAG
CTCACTCGTATCCTTGAACAAACTTGTTTTAATTTTAGTATATTTTACCC
CTCTTTTTTAGAAGGAAGATGTACAGAAGAGTGAGGAATTACAGAAGGAC
CAAGAGTCATTGCAAAGCGAAAAATTACATAATGATGATAAATCACAGAA
GAATTATCAAAAGAAGGAAACTCACAAAAAGACGAAAAATTACTAAATGC
CAAGGAATCACCGAAACACGGAGAGTCTCGGAAAGACGAAAAATTGCAAC
ATAGCCAGGAATCACCGAAGAACGAAGGATCCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005965XLOC_005965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010647-exon-sc0000108-1575043694:68130..68173TCONS_00010647-exon-sc0000108-1575043694:68130..68173Clytia hemisphaericaexon
TCONS_00010647-exon-sc0000108-1575043694:67689..67912TCONS_00010647-exon-sc0000108-1575043694:67689..67912Clytia hemisphaericaexon
TCONS_00010647-exon-sc0000108-1510915933:68130..68173TCONS_00010647-exon-sc0000108-1510915933:68130..68173Clytia hemisphaericaexon
TCONS_00010647-exon-sc0000108-1510915933:67689..67912TCONS_00010647-exon-sc0000108-1510915933:67689..67912Clytia hemisphaericaexon
TCONS_00010647-exon-sc0000108-1491911889:68130..68173TCONS_00010647-exon-sc0000108-1491911889:68130..68173Clytia hemisphaericaexon
TCONS_00010647-exon-sc0000108-1491911889:67689..67912TCONS_00010647-exon-sc0000108-1491911889:67689..67912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:67689..68173 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583184	1.2449	0.660311	0.646011	5.5052	3.10734	5.24843	2.10579	0.491438	3.4596	0	1.38434	0.775715	0	0.412625	1.77688	2.18432	0.60373	0.956707	2.38287	0	0	0	0	9.39209	9.49984	0.505819	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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