TCONS_00010646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010646
Unique NameTCONS_00010646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010646 ID=TCONS_00010646|Name=TCONS_00010646|organism=Clytia hemisphaerica|type=transcript|length=420bp
taTGAAACCAATGAAAACTTTTGTTTGGGTTGCCAATACTTTGGTGAGGA
GGTGCCACAGTACCGTCAACATTGTCCCCAGAAAGCTTGAAGAGGCTGCT
TCTTCAACACGCTTTTTCCACTCCGTGATCTCCTGGTCGTGGTTTTTCGC
CAAATTCTTATGCTTGTTCCGAGCTGGGAAGTAACAATTGGTCACGCCCA
TCTTGTTGAAGCAACCAAAGGATGCTTTGTTGCCACCGACAGCCATGAGA
GGCTGGTCGTTGATGTGTGCGACGATGCAATATTTGTTTACACCCCAAGG
TGCTTTGAAGATTAGAGAGTTACACTGAAGTCTGATCGCCTTATACTTAT
CTTCTGATTCTGCACTCTAGCCCATGGCTGATTGCAAGGCTATTTTGAGC
AGTGGACATATGTGGTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000108:37036..37679-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010646 ID=TCONS_00010646|Name=TCONS_00010646|organism=Clytia hemisphaerica|type=transcript|length=644bp|location=Sequence derived from alignment at sc0000108:37036..37679- (Clytia hemisphaerica)
TATGAAACCAATGAAAACTTTTGTTTGGGTTGCCAATACTTTGGTGAGGA
GGTGCCACAGTACCGTCAACATTGTCCCCAGAAAGCTTGAAGGTAACAGT
GAAATTTATAGTCTTCGGAAGTATTCTATCATGTATCACTGTTTACACAG
TAGAGAAAGAAGAAAAAAAGAATCTCCTTTTAAAGCCTTAAATCGCAGTG
TCATAACCCTCGCAGGCATCGTCACTAAAAGGCTGCTTGAATAGCAATTC
ATGTGGAAACAAAATTCAATGTTTTACTTTTACTTACATCCGGTCCCTCT
TTAACATCTTTCATAGAGGCTGCTTCTTCAACACGCTTTTTCCACTCCGT
GATCTCCTGGTCGTGGTTTTTCGCCAAATTCTTATGCTTGTTCCGAGCTG
GGAAGTAACAATTGGTCACGCCCATCTTGTTGAAGCAACCAAAGGATGCT
TTGTTGCCACCGACAGCCATGAGAGGCTGGTCGTTGATGTGTGCGACGAT
GCAATATTTGTTTACACCCCAAGGTGCTTTGAAGATTAGAGAGTTACACT
GAAGTCTGATCGCCTTATACTTATCTTCTGATTCTGCACTCTAGCCCATG
GCTGATTGCAAGGCTATTTTGAGCAGTGGACATATGTGGTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005964XLOC_005964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010646-exon-sc0000108-1575043694:37588..37679TCONS_00010646-exon-sc0000108-1575043694:37588..37679Clytia hemisphaericaexon
TCONS_00010646-exon-sc0000108-1575043694:37036..37363TCONS_00010646-exon-sc0000108-1575043694:37036..37363Clytia hemisphaericaexon
TCONS_00010646-exon-sc0000108-1510915933:37588..37679TCONS_00010646-exon-sc0000108-1510915933:37588..37679Clytia hemisphaericaexon
TCONS_00010646-exon-sc0000108-1510915933:37036..37363TCONS_00010646-exon-sc0000108-1510915933:37036..37363Clytia hemisphaericaexon
TCONS_00010646-exon-sc0000108-1491911889:37588..37679TCONS_00010646-exon-sc0000108-1491911889:37588..37679Clytia hemisphaericaexon
TCONS_00010646-exon-sc0000108-1491911889:37036..37363TCONS_00010646-exon-sc0000108-1491911889:37036..37363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:37036..37679 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17699	0.655856	1.14227	0.558765	0.90699	0.358358	1.5132	0.404755	0.850135	1.75505	0.340699	0.895848	1.67738	1.74197	0.286428	0.819683	1.00978	0.517497	0.357475	0.561108	1.62568	0.951541	0.385574	0.876357	2.52736	1.1278	0.461109	0	0.55987	0.380279
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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