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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010643 ID=TCONS_00010643|Name=TCONS_00010643|organism=Clytia hemisphaerica|type=transcript|length=417bp
CGAGTCATGAGTaaagatattggactggaattaGAGGCGATGATGTGCGA
AAATACCTCTTTGTCCAATGAAACGAGCATTTAACTGTTGTGCAGGTCTC
ACCGACGTATTGAAGACGACAAGTGGTGCAAGTCAAGAAATATATAACAT
TAGGGCTGTTATAAGTGATCTTAGTTGTGCCCGGTGGAACAACACAGTCG
TAATCTCTCATAGTACAAGAACTGGTAAAATTATCGATCACAGCAAATTT
CTCCTTCAATTGACATCTACTCGAATCACAAACTGAAAAAAGCTTCTTGC
GAGTTCTATATGTAGGCAGCACATGATGGCTTGGAACTTTCCAAATGTCA
CGGAGCATAACTTTACAAtcgtatttgtttttaaatttttttattttttt
tattttgaacatCAGAA Run BLAST on NCBI transcript from alignment at sc0000108:631259..634945+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010643 ID=TCONS_00010643|Name=TCONS_00010643|organism=Clytia hemisphaerica|type=transcript|length=3687bp|location=Sequence derived from alignment at sc0000108:631259..634945+ (Clytia hemisphaerica)
CGAGTCATGAGTaaagatattggactggaattaGAGGCGATGATGTGCGA
AAATACGTGAGTCATGTATTAGAGAGGTGTAAAATATTCATATATCGAAT
TAGGCCGAATTATAATAAAAGAAGATTCTCAAAAATGCGACAAAAGATTT
CCCAAAAGATTTGCTTTAAAGACGACTATATAATAAGCATATACGTTTGT
GTAATTTCACGAAACTtactttgaaatgaaattggtTTATGATATTACTG
TAATTGACACAaaactacacattttttataagcaaccgagttgctaaggT
CTCAGCCTAAGTAACTTGctagggaccattcaaaaagtacgtacgctcaa
aGAGGGGGAGGGGATTCTCCTAAAAGCGTACAGGGGTTGATGAAGAGACA
TACGTAATTTTTTTGATGTCGCGATACGCTCTTAAGACTGAGATATTTGC
CCGATATATGGGGTTTGCGGCAATGATAATTGAGAGGGGCGTACTGAAAA
TGTACTACGTCGAGGGGGGAGGTCCTTaaaagcgtacaagggggaggggt
cATAAATTTGCGATTTTCCAGCGTACGTATTTTTTGAATGCTCCCCTAGC
AACCCTGACTCCTGAAATCCCCATAGCAACTTTCTTTactcggtaaaata
aaaatcagCAAGTGATAcatttatggacctacctgaatgaaaaatgaaca
cGTGAACAATCCAGCAGTTCACATGATCTTAACATGTGGCAAAAGcccaa
aaatatcttttttcgaaaaataaacttaaacaGTGATACATTGCAGTTCT
CTGCCATACTTTGCACTCGCcttatttcatttgttttacTCATAAAATTC
TGGTCATCAGATTGAATCTCATGTTTTCAGTGCCCAGATTGACAAataac
aaaaattcactttcgtttttaaaatgttcatatGGCTATTAGGTAAAATA
CACAGTGCAAAGTATGGCAGAGAAGTGCAATATATCACTGCTCGACGGTA
CCATTTCAGTAAAAAAGGTTGTCAAAACCATgtaattttggtaaaaaatg
tCCATTTTTAAAGTGTCAAATTTCTCAAATTGCTCAATTGCGACTTTTAT
ATATTTGCTCACAATTTTAACCCTTTGGGCGTTTTCAGGGTCTATTTGGA
CCCTGCTCTACTTTTTGGACGTTTGGGAATTCCCCAGATAGCCACAAGTG
GTTATTAAGCGTCGTACCCCTATGGTAGTGAAAGCAGTCCTTGTGGCTTT
AGTCCTTGCGGTTTTTGGACTTCCAAGGACTTCATATGACTGAAAATGAG
TGAAACTCAGCACAATGGAAATGTCATTTATTTATCGAAACCTtctcaaa
tttggtcaaattgacagtctttttgataaatttgtagggaaaaaatcttc
aaatctcGTTTTCTCGAAATATCACTTTTCGATCTCCTGGCAAAGATTGA
CGCTGACCCAAGAGCCCAAAGAACACCAAATTTAAAGGGATCATTCTCCT
CTAGATTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGCTTAACCCTTTGGGCGTTTTCAGGGTCTAT
TTGGACCCTGCTCTACTTTTTGGACGTTTGGGAATTCCCCAGATAGCCAC
AAGTGGTTTTTAAGCGTCGTACCCCTATGGTAGTGAAAGCAGTCCTTGTG
GCTTTAGTCCTTGCGGTTTTTGGACTTCCAAGGACTTCATATgactgaaa
atggctgaaatttggcagagTGGTTGCCAATACTTGACATTTTGAAGGTA
TGGCTATCCTGTTCAAAATCGAACATTTTATTGTTGTCCAGGAAGCTTAC
GACcccaatttttttatattttcagtaAAAAATGAGCTTTCACTCATCAT
TTTGActtgtaaaataattttttcgatGAGTTCTGGCTTCATAAAAACCA
GATTTCCAAGCACTTTTCAGTTCTAGcttttaaaaaatgttcattGTTGC
GGCTTAAACTTAGCAGTGTAGAAGCCTCTGCAACTCGATTCCTGGCCGTT
CTTTTATCTTACCAAAAGCAAAAACTTTATTGAACGCCCAAAGGGTTAAT
CCTGCAAAAATTAACTAGTATAAAGTAGTTAAAACCAATAATTGAACGAC
AATATAACTTTGTGTCCATAGCTTTACACTTTAAAAGGCTCCCTAGCAGT
TTTCTTGCGTGATTAAAACTTTGAACCACCAtgatttgacaaaattttga
aacgTGATGCATGATTACACAAATTTTGTCACTGTATATATCACAAATTG
CGTGATTAACATCGGTTTCGTCATTTTACGTGATGCGTGATTATTGTGAA
CCTGAAAGTTAAGTGTGATCGGATATGGTTTTGGGTCATCACTGCTGGGA
GCCttcttaaaaacttaaaaactgaAAGAATCTGTCAATTTTGGGGAAAA
GAATGCTTCCAGTCTCTTTCACAATTTATACAGGAACTGAACTTGAGCAC
ATTTTATAAATTCCAGTATCATCTTCTTGTCACTCTCCCAGCATTCCAGC
AAGACAaattaacaataaaagaatCTGTTATATTCTGTATAAGAACTGTA
AATTAGTATATCTTTGGCACTCCAGTACTGTAATAACTTTCCCACCAACA
AGCAAGTGTAATTTAGGACAATGCCAAATTTATGCCAATGGAAGAACCCA
TCTGTGTCTGTGACTGTGTTGTGAGTTGTGAGTCATGATATTTGTTACTA
TCATCAACCATATGCAACCTCACAATTGCATGGCCCTGGTGAGAACtaga
cccttgggagttggctgggttctgtggtttggtggtttgttttttaatca
atttcttcattcgcgaaagtttatctcgCGAAATTTTGGGATAGCtccaa
ttcgcgaaagtttatacgcaacatttcgcgaatttttgaccTCGCGAAAC
TTTATCTCGcaaaagttaatccgattaaagtagttAAGTTAAGTGAGAGC
ACCGTAACAGACTTATTAAAATGAGTTATTAAAAGGGTCTTGCAAGTACC
TTATTTTGAAGGATTTTTCATTCCAGCTCTTTGTCCAATGAAACGAGCAT
TTAACTGTTGTGCAGGTCTCACCGACGTATTGAAGACGACAAGTGGTGCA
AGTCAAGAAATATATAACATTAGGGCTGTTATAAGTGATCTTAGTTGTGC
CCGGTGGAACAACACAGTCGTAATCTCTCATAGTACAAGAACTGGTAAAA
TTATCGATCACAGCAAATTTCTCCTTCAATTGACATCTACTCGAATCACA
AACTGAAAAAAGCTTCTTGCGAGTTCTATATGTAGGCAGCACATGATGGC
TTGGAACTTTCCAAATGTCACGGAGCATAACTTTACAAtcgtatttgttt
ttaaatttttttattttttttattttgaacatCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010643-exon-sc0000108-1491911889:631259..631314 | TCONS_00010643-exon-sc0000108-1491911889:631259..631314 | Clytia hemisphaerica | exon |
| TCONS_00010643-exon-sc0000108-1510915933:631259..631314 | TCONS_00010643-exon-sc0000108-1510915933:631259..631314 | Clytia hemisphaerica | exon |
| TCONS_00010643-exon-sc0000108-1575043694:631259..631314 | TCONS_00010643-exon-sc0000108-1575043694:631259..631314 | Clytia hemisphaerica | exon |
| TCONS_00010643-exon-sc0000108-1491911889:634585..634945 | TCONS_00010643-exon-sc0000108-1491911889:634585..634945 | Clytia hemisphaerica | exon |
| TCONS_00010643-exon-sc0000108-1510915933:634585..634945 | TCONS_00010643-exon-sc0000108-1510915933:634585..634945 | Clytia hemisphaerica | exon |
| TCONS_00010643-exon-sc0000108-1575043694:634585..634945 | TCONS_00010643-exon-sc0000108-1575043694:634585..634945 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:631259..634945 + |
Blast
The following BLAST results are available for this feature:
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