TCONS_00010638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010638
Unique NameTCONS_00010638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010638 ID=TCONS_00010638|Name=TCONS_00010638|organism=Clytia hemisphaerica|type=transcript|length=1262bp
TGCTTCATTGACTTCTGCTCTCACTAATGCTGTCATGGCCTCACATGAAG
TGGTCCTTTACCAAAAGAAGATTGCGGTGTTAAACACGACCACCATCGGA
CAAATCGCAACCATCAAAACCAATGGCATCCCTATCCAATTCGACAATGT
TGGACAAATCAACAAGGCCTTAGCAAAGAATAAAGTTGACGCGATCGCAT
TGGACGAGAACATTGCAAATTACTACATGGAACATTTAGTAGAAGACGCA
GAAGAAGGACAGAAATTTTCGCTCTATAAACGCATGGAAATGTCAGGCAG
TTCGTATGGTGCAATGGCGTATCAATCGAATGTTACGGAATTTTTGAATT
CGTTTTTTCACAGTAATGATGATCAGAGAGATGTCATGGCAATGTTAGCA
ATGGAGGGACATGGGCATCCAGTGCAATTAGACGCTTCAGCTTCGGATTC
CACTGACTACTTTAACTCCACCAGAATGTTGGTGTTGACTATCATCTCTC
TCGTCATCATAACAATCGTCATTACATTGGTCGGACTGGCTATCAAATAT
TTCACTCGTCAATGCATGAAAGCGGCGAAACACGACAACGGCGACGCGAT
GAACTCTCTAATGGACTCTCCTATCACTGAAAAAGATCTTGATGATATTG
TTGAACAAATACATCTTCGAATCAAGGAAAGAGTGAAACAAAAAGAAGTG
AATGGAAACCAGTATCATGATTCTGCTACTAAATTGTGAGGAGTGGTTTC
TACCTGTTGAATTGATTTTTGGAgagattttttgtatgaaaaggTGATAT
GATGGTTCAGCTTCGCTGTAACCATGGAAATCTGATGAACGATATCGAAT
TCAAGCAGGCGAGTTTTGCTTAAATGAGCAGAAAGATGTGAATGTAGCCC
CTCGGGATATCCTGGTTTTTACCTGATATAAAGATGTGGGATTTACCCTG
GACCCGCTGAAAAACTCTTTTGGAGCTAACATGCTCGAGTGTTTTGGCGT
GCCCAGGGTGAACTTCTAGGTCTAAATATAAGGTTGTGCTAGACATAATg
tgaatgaaaaacattgttaataTTGTAAGGTTTCCGTGTAATGCAACATT
GTGGTGCAAGTGGCTCTAGATACGAGATTGGTGACAAGACTAAAAATCTT
ATCAGTGTCTAAAGtaaaaattctgttttgatCCGAACGAgatatttaaa
atttgaatttacatttaaaatcaaccaggctcaaaattttagaaaacatg
CGAGTTAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000108:428335..433538+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010638 ID=TCONS_00010638|Name=TCONS_00010638|organism=Clytia hemisphaerica|type=transcript|length=5204bp|location=Sequence derived from alignment at sc0000108:428335..433538+ (Clytia hemisphaerica)
TGCTTCATTGACTTCTGCTCTCACTAATGCTGTCATGGCCTCACATGAAG
TGGTCCTTTACCAAAAGAAGGTTAGTTCCCAGGTCCCTTAGAGTCTCTTC
AAAATGCATTGTTTTCCATGTACACTGCTTCATTGACTTCTGCTCTCACT
AATGCTGTCATGGCCTCACATGAAGTGGTCCTTTATCAAAAGAAGGTTAG
TTCCCAGGTCTCTCTAAAATGCATTGTTCTCAATGTACACTGCTTCATTG
ACTTCTGCTCTCACTAATGCTGTCATGGCCTCACATGAAGTGATCCTTTA
TCAAAAGAAGGTTAGTTCCCAGGTCTCTCTAAAATGCATTGTTCTCAATG
TACACTGCTTCATTGACTTCTGATCTCACTAATGCTGTCATGGCCTCACA
TGAAGTGGTCCTTTATCAAAAGAAGGTTAGTTCCCAGGTCTCTCTAAAAT
GCATTGTTCTCAATGTACACTGCTTCATTGACTTCTGATCTCACTAATGC
TGTCATGGCCTCACATGAAGTGGTCCTTTACCAAAAAAAGGTTAGTTCCC
AGGTCCCTTAGAGTCTCTTTCAAATGCATTGTTTTCCATGTACATTGCTT
CATTGACTTCTGCTCTCACTAATGCTGTCATGGCCTCACATGAAGTGGTC
CGTTATCAAAAGAAGGTTAGTTCCCAGGTCCCTTAGAGTCTCTTTAAAAT
GCATTGTTTTCCATGTACACTGCTTCATTGACTTCTGCTCTCACTAATGC
TGTCATGGCCTCACATGAAGTGATCCTTTATCAAAAGAAGGTTAGTTCCC
AGGTCTCTTTAAAATGCATTGTTCTCAATGTACACTGCTTCATTGACTTC
TGATCTCACTAATGCTGTCATGGCCTCACATGAAGTGGTCCTTTACCAAA
AAAAGGTTAGTTCCCAGGTCCCTTAGAGTCTCTTTCAAATGCATTGTTTT
CCATGTACATTGCTTCATTGACTTCTGCTCTCACTAATGCTGTCATGGCC
TCACATGAAGTGGTCCGTTATCAAAAGAAGGTTAGTTCCCAGGTCCCTTA
GAGTCTCTTTAAAATGCATTGTTTTCCATGTACACTGCTTCATTGACTTC
TGCTCTCACTAATGCTGTCATGGCCTCACGTTAAGTGGTCCTTTATCAAA
AGAAGGTTAGATCCAAGGTCCCTTGGGGAGTCTCGTGCATTAGCAAGACT
GTAGCTGAAATTTATTCATCTTTTCAAAATTGGCAATGACCAGTATTGTT
ACAATTCGAAACGTGGATGGTTGATTTTTATCCGCGATCTCCAACTTGAG
AGATATGAATCTGTTTGAAGGAAACTCTTTTATATTAGCATACCTTTAAT
TATCGACTCGAAAAACTAGATATAAAATTGCCAACCGTAAATTTCACGAT
GGATTCCTGATATGATATTTGTATTTTCAGATTGCGGTGTTAAACACGAC
CACCATCGGACAAATCGCAACCATCAAAACCAATGGCATCCCTATCCGTA
AGTCCATAGTATTTCCAGAGGGTGAATAAGCTATTACGACATTATGACTT
CCTTAGTGAGAACTTTCTTCAATGAAGTAACGATAATCGTGATCAGAATT
GGTGTCCCGTGACCCTTTTCTATCTACAAGTCCCCCTCTCCCCCAAATAG
AGCACCTTCCTTCCATTTCTCCATCAAAATTGGTTTTGGGGGTGGGAAGA
CGAACGGTAATAATCTATTTATATGATTAAAAGATACAACAAACCTCATT
TCTTCAGACAAATTACTTTATAGTATTCTACTCCAAACCTTGAAAATGTA
TCTATCATTTTACCCTTTGTATTCAATGTAGAATTCGACAATGTTGGACA
AATCAACAAGGCCTTAGCAAAGAATAAAGTTGACGGTAAAAATTCTTCGA
AAGTTTGATTTTATAAGGATTAATTTAGGTAAATTATTAAGAATATTCTT
TATGTGGATTTCAGAGAATGCATTATGCAACTCTGGACAGAGTTGacacc
aattgcattgcgcaaaaagttgTGTAGCCctcttcgaaaaagtaaccggt
taacaatggCCGGTATCCAGTATTTGACGGAAAAAATGACAGTTAGACCG
GTATTAAAAGGCCGACTTTCCTGTATTCCTGTACTCGATACAGCCGGTAT
TTCATTGGAGATACCTGTATTTTCCCTTTACTTTATGTAACTTCAGAGAT
TGGTTCGGAAAATAAAAACGTTTTCATTCTCATCCTTCAACCTAACTTTT
TATTCAAATTGTGTGAATTTAAGACCCCCATATACCTTGTCTTCGACaag
attttttgtatatgtATTATAAAGTCCATTCGCAAAGCTTGTTTAGAAGG
GTCAGGGTTgaaagacatcttccattgaaTGTACACTCCTTTTGCTATCG
TGTGGAAAGTATGTCAACGTAATTAGACGTCTTCCCTTGAAGCTGGTTTC
CATTAGGCTACTGGCATCCAATGATAAGACTTTGTGCTCCTTATATatta
cctgtggttttgtagattTCTGCGAATCAGGCTAGGTTTCCATATGATAG
AAAAAAGAGTACACATTTAAAGTGAATGgactttaagcctaaaaacagaa
aatttgtATCAAAGATTTATTTACACACAATTTTGCAGCGATCGCATTGG
ACGAGAACATTGCAAATTACTACATGGAACATTTAGTAGAAGACGCAGAA
GAAGGACAGAAATTTTCGCTCTATAAACGCATGGAAATGTCAGGTATTAC
GATTAATCATTTATTATTGGGTtgttccataaaatttccatacaagGGGT
GGAggacaaaccttttcaagtcaaaaaagatttcttggaaatgtgtgtAT
CCgcctggaaaatgaaaaaactctTTTAGTTCTCGAATTACCCCTGGAAT
TGTTCGCCCTGTGTGGATATGAATACTGAAAACGTTGACATCTACTGTAA
TTTACGAGGACCTCAGCTCCAATTTTTATCCTACTTCTACAATAATATCG
TAGCTTTCAGCTCAAATGTCAATTCAAGGCCAATCTATATCCAAGCTTCT
TTCAAAGTTTATCACCGAGAAAAAAAGTGTTCATCCAAGGAAGCTTGTTA
TTTTCTCACTTTATGTGATTAATGGCATCCAGCATATATACTGTCATTTA
TTTATACTATTCCGTTTTTCAGGCAGTTCGTATGGTGCAATGGCGTATCA
ATCGAATGTTACGGAATTTTTGAATTCGTTTTTTCACAGTAATGATGATC
AGAGAGATGTCATGGCAATGTTAGCAATGGAGGGACATGGGGTAAGCTAC
AAGGGGGTTTCCCTTCCGGAGGTTTGGGAAGAAGATGGAGTTTTTTACTG
TAATGATGATCAGAAATATCGTGGGAATAGAATGGAATAAAAAAGAATAG
AAACCATACGAATAATTATTTCGGCCACtccaccgtcctcaaaagtgcta
ATAACGACGGTACTGAGGAAataagtttttaaaagaatCTCTTTTTGTTA
CATCCTTTGTAATTAGAAATGAAATTacaaggacatgtttttttaaataa
gcaagtgtctaaccctatatcaggctcgttCTTAAACGATAGAGTCATTA
TTTAGGTATCAAAAACTGAGTCTGTATATGCATATAAATGTTATGCTTAt
agtatagtaaaaaaaaggaaaCTATTGAAATAGTTTGAGAAATCTCTTTT
TGTTACCGTTCATAGCATCCAGTGCAATTAGACGCTTCAGCTTCGGATTC
CACTGACTACTTTAACTCCACCAGAATGTTGGTGTTGACTATCATCTCTC
TCGTCATCATAACAATCGTCATTACATTGGTCGGACTGGCTATCAAATAT
TTCACTCGTCAATGCATGAAAGGTACTTAAATACGTTCCTTTATAACTTT
TCTCCAGAACCCTTAGCAGCGCAGTCAGGTACTAAGAGACTGGTgatgaa
tttacaaggaaatAACGTCTCAACTCTGAGAAtatcaatgcaatgacttc
agacATTTTGACGCCATTCCATTTAACATTACAGTTGGTAGCAACCAGTC
CTCTATGTAGGAGGTCTAGCAGGGGCCCTCACTGGTTTCAAATAACTTTT
GCTCAAGTGGCTATTCGTGGCTTAGTAGTTATAGTGGCAGTTCTTTGTTT
TCTAAGGGATCAACTGGTCTGACATCGACTCCTACTGTTTTTCAGTGATA
TAGATTAGGTAAACTTCTCTTGTAAAAATAATACGCCATTTTCAGGAACA
TGTATCGACGTCTCTTCATCACTAGTTTGAAATATTTAGGCTTTTCTTTA
GGCTACGTACGATCTTCTTTCGCTCCGAGCGTAAAACATCTACTCTTCGG
AATATGCGCACTACCCTTAGGcatgggggtcactagtggtgCCGTCCATA
GATTAAGAGCAAGGCCGACAAGCCTGTCTTTTGTGTAGGCTAGTCTTACG
CACGAGCAATAGGGAAAGTTCCATTAAGTAAAAAGGCGTTATATCAACTT
CTCTTTATTTCCAGCGGCGAAACACGACAACGGCGACGCGATGAACTCTC
TAATGGACTCTCCTATCACTGAAAAAGATCTTGATGATATTGTTGAACAA
ATACATCTTCGAATCAAGGAAAGAGTGAAACAAAAAGAAGTGAATGGAAA
CCAGTATCATGATTCTGCTACTAAATTGTGAGGAGTGGTTTCTACCTGTT
GAATTGATTTTTGGAgagattttttgtatgaaaaggTGATATGATGGTTC
AGCTTCGCTGTAACCATGGAAATCTGATGAACGATATCGAATTCAAGCAG
GCGAGTTTTGCTTAAATGAGCAGAAAGATGTGAATGTAGCCCCTCGGGAT
ATCCTGGTTTTTACCTGATATAAAGATGTGGGATTTACCCTGGACCCGCT
GAAAAACTCTTTTGGAGCTAACATGCTCGAGTGTTTTGGCGTGCCCAGGG
TGAACTTCTAGGTCTAAATATAAGGTTGTGCTAGACATAATgtgaatgaa
aaacattgttaataTTGTAAGGTTTCCGTGTAATGCAACATTGTGGTGCA
AGTGGCTCTAGATACGAGATTGGTGACAAGACTAAAAATCTTATCAGTGT
CTAAAGtaaaaattctgttttgatCCGAACGAgatatttaaaatttgaat
ttacatttaaaatcaaccaggctcaaaattttagaaaacatgCGAGTTAA
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005958XLOC_005958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010638-exon-sc0000108-1491911889:428335..428404TCONS_00010638-exon-sc0000108-1491911889:428335..428404Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:428335..428404TCONS_00010638-exon-sc0000108-1510915933:428335..428404Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:428335..428404TCONS_00010638-exon-sc0000108-1575043694:428335..428404Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:429765..429831TCONS_00010638-exon-sc0000108-1491911889:429765..429831Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:429765..429831TCONS_00010638-exon-sc0000108-1510915933:429765..429831Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:429765..429831TCONS_00010638-exon-sc0000108-1575043694:429765..429831Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:430166..430219TCONS_00010638-exon-sc0000108-1491911889:430166..430219Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:430166..430219TCONS_00010638-exon-sc0000108-1510915933:430166..430219Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:430166..430219TCONS_00010638-exon-sc0000108-1575043694:430166..430219Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:430973..431077TCONS_00010638-exon-sc0000108-1491911889:430973..431077Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:430973..431077TCONS_00010638-exon-sc0000108-1510915933:430973..431077Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:430973..431077TCONS_00010638-exon-sc0000108-1575043694:430973..431077Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:431507..431625TCONS_00010638-exon-sc0000108-1491911889:431507..431625Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:431507..431625TCONS_00010638-exon-sc0000108-1510915933:431507..431625Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:431507..431625TCONS_00010638-exon-sc0000108-1575043694:431507..431625Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:432050..432206TCONS_00010638-exon-sc0000108-1491911889:432050..432206Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:432050..432206TCONS_00010638-exon-sc0000108-1510915933:432050..432206Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:432050..432206TCONS_00010638-exon-sc0000108-1575043694:432050..432206Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1491911889:432849..433538TCONS_00010638-exon-sc0000108-1491911889:432849..433538Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1510915933:432849..433538TCONS_00010638-exon-sc0000108-1510915933:432849..433538Clytia hemisphaericaexon
TCONS_00010638-exon-sc0000108-1575043694:432849..433538TCONS_00010638-exon-sc0000108-1575043694:432849..433538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:428335..433538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.148356	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.120602	0.178014	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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