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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010629 ID=TCONS_00010629|Name=TCONS_00010629|organism=Clytia hemisphaerica|type=transcript|length=269bp
aaaaatttccgTTGTGCTTAGTAGCCTAGTCTAGTAAATTAATTGTAAAG
TTGAATTTTTAACGACTTAGAAAAACCCATTTATAGATAATATATTTACT
TTGTACATAAATTCATTATATACTGAATCctatttgaattgtttttgttt
ttgtttttactacttagaaaaagaaaaaattttgaatgttttactCAACC
GAAATACCTAATGATATCCGTACGCTCCCGAGTACTAGGTTTGCCAGGTC
AAGGGTATGTCCGGGTCGA Run BLAST on NCBI transcript from alignment at sc0000108:366643..371128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010629 ID=TCONS_00010629|Name=TCONS_00010629|organism=Clytia hemisphaerica|type=transcript|length=4486bp|location=Sequence derived from alignment at sc0000108:366643..371128+ (Clytia hemisphaerica)
aaaaatttccgTTGTGCTTAGTAGCCTAGTCTAGTAAATTAATTGTAAAG
TTGAATTTTTAACGACTTAGAAAAACCCATTTATAGATAATATATTTACT
TTGTACATAAATTCATTATATACTGAATCctatttgaattgtttttgttt
ttgtttttactacttagaaaaagaaaaaattttgaatgttttactCAACC
GAAATACCTAATGATATCCGTACGCTCCCGAGTACTAGGTTTGCCAGGTC
AAGGCAGGGTGGCCACTAGTCCTGGAAAGTCCTTGAAAGTCCTGGATTTT
GTTTTAGTCCTGGAAAAGCGTCCTGGaaattcagaaaattgattaaagtc
CTGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AATTGATTAAAGTCCTGGAAAAGTCCTGGAATATTTTTCCTTGTTAGTCC
TGGAATTTAACCTTTCTCTATAAGCGATCAAGCGTGAAGGAATTTGTATT
CTGATGAGATATTTATTGCTTTTATTTTCTGTATTCTAATATATGTGTTT
GCAGAAGTcataaatattgtcaaaatcgtCAAACATAATggcatactctc
gggtaccaatGGAAGGGGTTTGGAATTAAgcggttggaaaaaatctcaaa
atctaatCAGGGAGGTTGGAATTACAATGCCCTGGCCTGGGGGGAAAACT
TGAACTTGAactatcaaaaacattttcccaaaacttaattagcagggggt
ggggtggaataagaatgtcatgggtggaaaatttttcaaaaaattaatta
gcgaggGGTACACTTATTAAGTACCCAAGAGTAGTTTGGCTAAAAGCCAA
AAGCATTATCGTCTAAAAACTGGTTCCTATGAGACACTTATAAAACACCA
GCTTTATGAATACACccattgaagtttttcaaaatatcacgTCCTATCTT
CGAAAATATTACCTTGTTGTGTTTCAAAGAGATAATCCTATgtttctgtt
tctaaaaaagtAATATTTTCCAATTGTTGATGAAAACGATGATGCACCAC
TAAAGTTATTTAAATTGGCTTTTTGGGAGGAGATTTTGTTAAATCTTATT
AAAAATCTTATTAAAAGTTGGACTTTGTGCGTCTTAAACTGCGCCCTGAA
ATCAATGTTGgtgtaataatttttcaaatttttcatgctCGCTTTGCTCG
CATCAATaagattttggtaattttttttgaaatctagtttGCAATTTTTT
CATGACAATCTAGCAGTTTCGAATGGTAATCTAACTGTGCGCCTCATGAC
CAATTAGCTGAATGCAATTTAAAACATAacccaatttttttcgctcgaaa
AGTAATTCGAAATCCGTATTGGttactttaaaaacaaaaatacaagaGTA
ATGTACGGTTTTAACTCTCACTTTACAAAATCTTTGTCGCCTAAAAATAT
CCTCAACAAGTAAGACAATTTGTAAGATTCTTTGTAAAGCTATGTGATTG
TCTATGCAAATCTTCTTTattggcccagctagctttagcgtagtgggcct
ttcattagcattctgcccggtgtcagtATGTAACAATTTACTAGTCGATA
CGCGTTTTATTTCAAGCACAGGCTAGTAcaaattgtgaaaaatttgattg
gccgaaacaTGTCTCTTTTAGAACATGATTGGCAGAATAAAAACAATTGC
AATCGTCTTTATTGgtttaaaacataaaaggagaaaatacaattaactac
taaaactataagaatataacagatgtagtacgttttaagaaaaacaatgt
gatttacaaacgaggcccggaaaacccgagttacaaaaactcgagttaca
aaaaccctagttacaaaaacccgagttacgacgaatatgacgtcacaagt
ctcaaattatgacgtcataaggggacttcttaactcgaaaaagtttttta
ctgttgttttgaaactcgaaatatttttttcaaattttgctttagagtta
cgtaactcgaaaataaaattcaaatttcaattttcgagttacgtaactcg
aaaataaattttaaatttcatttttctagaTACGTAACTCGAAATtgtag
tacacgttttttttttattagaacacctaaaatttggctgagcgtggatg
tgcttattttttttagcaattttcagccttaaatgttcttaaatgcgttc
ttaatttttcggactactttaaatcgacaacatcatgcaaaataaaaagc
acttaaagttggtaaaatttggacaatttttgactctcgattttagaaaa
tccatccctaagtttggttaaaactgcttgaaaagaggaaaaaattgtag
tttcttgtcatattttttcaaactgaggctgggcatgttcttacgatgtt
cttaatttttcgacgaatttcagcctaaatgttcttataaactgggttct
aataaagaaaaaaacgtgtacattattTGAACTTTCGAGTTATCTCTAGG
TGAAAATAAAATACTAGAATTCACCATTTTTTTTGAGAAGAATCAATAGA
TCAGATTAGAATAGAAActtattttaaaacataaatgaTAGAACAATGTC
AAAAGATCTAATGTACAAAACAAAGCAGGCGTCataaaccccgggggggg
gcactcgatctgaaaacgaccatacgttcggcccaaaatttggcttctaa
aatcggacccttacagtgcagtgaatttccatgaaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgca
gtgaatttccatgaaaaatcatacccttacagtgcactttttcaaaattt
ctcgcccgtaagggcgaaaatttttgcaattttcctagaaaatgtggaat
ttttcctccaaaattgaccaattttgttccaattttatcaaaaaattggc
cttttatcacaatttcctacccttacagtgcagttcagtgcagttttgta
atttcctacccttacagtgtactagctgaactatgaaaNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTAATCGaatcttttagattttagtcTACTTCAG
CCAACAAAACCTTCAGAAATTCCCATCAAAATAGAGGTATAtaagtttca
agaaaattacagaaaattaaATTCTTTGCTGTTCCCGTTCATCTTTATTC
CTCTTCCTCTTCCTCTTTTAGTTTTATAGATCAAAAACCCCATTCCgtaa
actaaaagaaaaatagcactttttagaatttttggccaACTTGGTTGCGC
TTTAACATAACTCGAAAAATAATGTTGTAACTTATGTGTTCGAGTTACGT
Atctcgaaaaatgaaatttaaaatttgttttagagttacgtaactcgaaa
attgaaatttgaattttattttcgagttacgtaactctaaagcaaaattt
gataaaatatttcgagttacaaaacaacagtaaaaaactttttcgagtta
agaagtccCCTTGTGACGCCATAATTTGAGACTTGTAACGTCatattcgt
cgtaactcgggtttttgtaactcgggttttccgggcctctttacaaacct
tcttctctttaggaatgtgttcttttaaaaaagttgattttacatttctc
tatcatgtgaacagttcagtgaacagttcagttgttcacgtgcTAGGAAC
AAAACAGTTCTGTAtataagattaaatattttgatttatttctcattttt
gctAATAAGAGATAGGCGAGTGGTTTAAGGCGTCTTTGGCTTGTGCTAGC
GACTTTAGGTTCAAATCCTCTCTGTTTCTtaagtcttgttcagttcatat
ttttattcgctgggcctttatgccctctgggcttcttgtcTTCTTGGTTA
AAATCAAATTGGCCCATTCTCTATTTCGTTGCTTTGGAGCAAGTTAGAAA
AAGCTTTGCACCTCATTTTGTGTTAATATTTTTCACATACATAGCTCAGT
TCCGAGAGAAAATACTTTTATTTTAGGATAAAAAGTCCtggaaaagttta
aaaacatccTGGAAAAGTCCTTGAAAAGTCCTGGAATTTGACTTGTTTTT
TTGAGTGGCCACCCTGCAAGGGTATGTCCGGGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010629-exon-sc0000108-1491911889:366643..366895 | TCONS_00010629-exon-sc0000108-1491911889:366643..366895 | Clytia hemisphaerica | exon |
| TCONS_00010629-exon-sc0000108-1510915933:366643..366895 | TCONS_00010629-exon-sc0000108-1510915933:366643..366895 | Clytia hemisphaerica | exon |
| TCONS_00010629-exon-sc0000108-1575043694:366643..366895 | TCONS_00010629-exon-sc0000108-1575043694:366643..366895 | Clytia hemisphaerica | exon |
| TCONS_00010629-exon-sc0000108-1491911889:371113..371128 | TCONS_00010629-exon-sc0000108-1491911889:371113..371128 | Clytia hemisphaerica | exon |
| TCONS_00010629-exon-sc0000108-1510915933:371113..371128 | TCONS_00010629-exon-sc0000108-1510915933:371113..371128 | Clytia hemisphaerica | exon |
| TCONS_00010629-exon-sc0000108-1575043694:371113..371128 | TCONS_00010629-exon-sc0000108-1575043694:371113..371128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:366643..371128 + |
Blast
The following BLAST results are available for this feature:
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