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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010626 ID=TCONS_00010626|Name=TCONS_00010626|organism=Clytia hemisphaerica|type=transcript|length=472bp
CACAACAGGAGATTTGGTGCCCAATTTCAGTGGTGGATTTATGACCACTA
GATATTCAAATGAAAACACATATGGTCCGAAGTTTACTGGCTGGGAAAAA
GTTTCTTGTTTGAGGGAGGATATGTTTGGGGATCAATGTAAAAGCAATGG
CATCACATTCGCACTGCGTGTCCGTGCTTCAAACACGACAAGCACGAGAA
AAGACGTGATCTTCATCACGCCTCACGCTGGAACTGATATCGGCTACCGT
GTTGTTTACACAACAAACGGGGATATTGTTTTGGGGATTTGGGCAAACAC
TTTTCATATGGCATGTCAGGTTCCTATGGCAACCAAAGAGATTTACAAAT
GGCATCATTACGTCATCGCGATACGCATTCAaccctttttgaaaatgtta
tgtTATGACAATGGATTGGTGATCGGTGAAAATGAAGATTCAAGGCCTGT
GCCTGGTGGAGGTGAGTCACCA Run BLAST on NCBI protein sequence of TCONS_00010626-protein >TCONS_00010626-protein ID=TCONS_00010626-protein|Name=TCONS_00010626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
TTGDLVPNFSGGFMTTRYSNENTYGPKFTGWEKVSCLREDMFGDQCKSNG
ITFALRVRASNTTSTRKDVIFITPHAGTDIGYRVVYTTNGDIVLGIWANT
FHMACQVPMATKEIYKWHHYVIAIRIQPFLKMLCYDNGLVIGENEDSRPV
PGGGESP Run BLAST on NCBI transcript from alignment at sc0000108:205573..206869+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010626 ID=TCONS_00010626|Name=TCONS_00010626|organism=Clytia hemisphaerica|type=transcript|length=1297bp|location=Sequence derived from alignment at sc0000108:205573..206869+ (Clytia hemisphaerica)
CACAACAGGAGATTTGGTGCCCAATTTCAGTGGTGGATTTATGACCACTA
GATATTCAAATGAAAACACATATGGTCCGAAGTTTACTGGCTGGGAAAAA
GTTTCTTGTTTGAGGTAGGATATATATTTTAAGTGCTTTTCTGTAGATTA
ATCCTTTAAATGCTAACAATCTATAACTtcaacaaattttcaaatatttt
ctgaatTCAAATGCGCGAACATATCCCAATTAAGAAAAAATGCCAACATA
GActtagttgacgctctctaattcgatcttcaaggggaattggattttca
tcgaataagggagcttatcgaataagagagcatcgtttatgagagtttct
tgttgacggggactttaattttcatcgaataagggagcctatcgaatagt
agaacgtcaaattagagTGCGTTAAATGTAGTTTTCTTATTCGGGTGGGG
TACAAAAACAGGTTGGCATAGGTCGCGGTCGCCTGCTGGTTAAGGACCGA
AAAAAATCAGTTGGTCTTATAACTGTGCCAGTGGTACTTCATGGGTTTAA
CggggaaaaaagcaaaaatattcgaaaaattgAGCTCAAAATAAATCTCT
CTGACcactgagctttatataaacCTTGGGCCAGTTTCTCAATCCTGGTC
AACCAAAATCTTAGATCAGAATAACTTTGAAAggggtaccctaatggtag
cactactcttTGTTGGTGTTGTCTAAAGTGTGGCTTCGAATCAATCGATG
TACCCTCATTTAGCGGGAACACATCAACAAAAACTAATCAAAGATTGAGG
ATATTAACTTAGTCTAAGGTTTGCATATTGATCTTCGCACTTAAAGTTTT
AATGCCGATGCCTTCCTTTAAACCCTAACTGTAATGTCAATGTCACTTCT
ATGTCTTTATTTTAACCCTATTTAACCCTTACTTCACAGGGAGGATATGT
TTGGGGATCAATGTAAAAGCAATGGCATCACATTCGCACTGCGTGTCCGT
GCTTCAAACACGACAAGCACGAGAAAAGACGTGATCTTCATCACGCCTCA
CGCTGGAACTGATATCGGCTACCGTGTTGTTTACACAACAAACGGGGATA
TTGTTTTGGGGATTTGGGCAAACACTTTTCATATGGCATGTCAGGTTCCT
ATGGCAACCAAAGAGATTTACAAATGGCATCATTACGTCATCGCGATACG
CATTCAaccctttttgaaaatgttatgtTATGACAATGGATTGGTGATCG
GTGAAAATGAAGATTCAAGGCCTGTGCCTGGTGGAGGTGAGTCACCA Coding sequence (CDS) from alignment at sc0000108:205573..206869+ >TCONS_00010626 ID=TCONS_00010626|Name=TCONS_00010626|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000108:205573..206869+ (Clytia hemisphaerica)
ACAACAGGAGATTTGGTGCCCAATTTCAGTGGTGGATTTATGACCACTAG
ATATTCAAATGAAAACACATATGGTCCGAAGTTTACTGGCTGGGAAAAAG
TTTCTTGTTTGAGGGAGGATATGTTTGGGGATCAATGTAAAAGCAATGGC
ATCACATTCGCACTGCGTGTCCGTGCTTCAAACACGACAAGCACGAGAAA
AGACGTGATCTTCATCACGCCTCACGCTGGAACTGATATCGGCTACCGTG
TTGTTTACACAACAAACGGGGATATTGTTTTGGGGATTTGGGCAAACACT
TTTCATATGGCATGTCAGGTTCCTATGGCAACCAAAGAGATTTACAAATG
GCATCATTACGTCATCGCGATACGCATTCAaccctttttgaaaatgttat
gtTATGACAATGGATTGGTGATCGGTGAAAATGAAGATTCAAGGCCTGTG
CCTGGTGGAGGTGAGTCACCAACAACAGGAGATTTGGTGCCCAATTTCAG
TGGTGGATTTATGACCACTAGATATTCAAATGAAAACACATATGGTCCGA
AGTTTACTGGCTGGGAAAAAGTTTCTTGTTTGAGGGAGGATATGTTTGGG
GATCAATGTAAAAGCAATGGCATCACATTCGCACTGCGTGTCCGTGCTTC
AAACACGACAAGCACGAGAAAAGACGTGATCTTCATCACGCCTCACGCTG
GAACTGATATCGGCTACCGTGTTGTTTACACAACAAACGGGGATATTGTT
TTGGGGATTTGGGCAAACACTTTTCATATGGCATGTCAGGTTCCTATGGC
AACCAAAGAGATTTACAAATGGCATCATTACGTCATCGCGATACGCATTC
AaccctttttgaaaatgttatgtTATGACAATGGATTGGTGATCGGTGAA
AATGAAGATTCAAGGCCTGTGCCTGGTGGAGGTGAGTCACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010626-exon-sc0000108-1491911889:205573..205686 | TCONS_00010626-exon-sc0000108-1491911889:205573..205686 | Clytia hemisphaerica | exon |
| TCONS_00010626-exon-sc0000108-1510915933:205573..205686 | TCONS_00010626-exon-sc0000108-1510915933:205573..205686 | Clytia hemisphaerica | exon |
| TCONS_00010626-exon-sc0000108-1575043694:205573..205686 | TCONS_00010626-exon-sc0000108-1575043694:205573..205686 | Clytia hemisphaerica | exon |
| TCONS_00010626-exon-sc0000108-1491911889:206512..206869 | TCONS_00010626-exon-sc0000108-1491911889:206512..206869 | Clytia hemisphaerica | exon |
| TCONS_00010626-exon-sc0000108-1510915933:206512..206869 | TCONS_00010626-exon-sc0000108-1510915933:206512..206869 | Clytia hemisphaerica | exon |
| TCONS_00010626-exon-sc0000108-1575043694:206512..206869 | TCONS_00010626-exon-sc0000108-1575043694:206512..206869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:205573..206869 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013320 | ConA-like_dom |
Blast
The following BLAST results are available for this feature:
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