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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010625 ID=TCONS_00010625|Name=TCONS_00010625|organism=Clytia hemisphaerica|type=transcript|length=1614bp
GCCAGACAAGGCTTGATTTCACAATTTCATTCTCAAGGTtgaaattatat
ttcaaaaataaggtTCAtaaagtgtatccgtTTTCCCACTAGAATTTATA
GAATagcaatttaaaaaacaaaacattttctttttatattaaATCGCAAA
GTATACTTCGTGAAGTCAAATTCTTTCAGGGACTGATTAATTTGAAAGTT
CCATCCATCAGCAATCTGTGTATGAAAGGCTCCATTCATTTATTTACCAA
TTTGCAATGTCTCGCGTAATTGCTTTTTAAAGCatattaaacatttttaa
atgtcGTTGATGAAAAGGGCTTCAAAATCAATCGAACATGCGTTTAAATA
CTTTCCCTTTTGAATTAACGTATCAACGAATTGTCTCCAAACTATAATAT
CGTAACTTTTTGTATACTTTGTCCAAATTTCACAATCCATCATTGTCGTC
TTCGAAATTCAAGGCATCCCATCTGACACACAATATTGTTTCAAAGTTCA
TTTAATGTTCACCACatctatataacgttagatgaacgttatgGGCCAGC
TTGGATATCACCTAAAAGTTTCATGTCGTCTTTTCAAGGGATTTCAACAC
CATTTTAATCAATCTTGCCTTTTTCAATATTGTTAGAAATTCTTCTATGA
AAGATGCTTGATCCGCATATGAAAGATGCTTGATCCGCATCTTTTTTTTT
GCATCCTATCTATTTTGCAATCGTTTATTGTTTAAAGATAATCCGCGAAG
ACCGACTCAAACTACTTCGCTTTAACGTATTATTATTTGCACAACAACTC
TTCCTTGCTTTCTCAATCTCACCGCATGTTTTCTCGGGTGAATCAACTTT
AAAGTTTGCGCAAATGATATCTTCATCTATGCGACACTTTATGGAGATAA
TACCATCGTTTGGATAAGTCATATAGTTCATTTGTAACAGTTTAGGTTTA
ACATTGATTATCTCCGTAAGGGGAACTTCGATCCTCGCCAAATCATTGGC
CTGGTGTACAATTTTCATACTAGTAATACACAACAGTCCTAAGTTACTCC
CTGAATCGTAGACGTGTAAACCATGGCTTAAGTTATAGCCTTCGGTTGGT
GTGCTGTAGATAACATAGCCTAGTGAATCAGTCTGTTTTGCTACTACGGA
ATCCAGTCTAGGTCGGCGTCTACGAGGCTTTTCACGATATTGGACTACAT
CTTCGGctatttcttttgatttgccACATCCCATGTTGATAAAAAAGGTA
TGAAAACTCTTTGTATTGTCTGTGATGTGtgcaataaattcaaaattcca
GTTAACAAAGTATCCTTTTTGGTTTTGatctttgtaaaatattcttgaat
atattttcaaaaaatcgttAGCCAACGTGCTTTCATCTCAAATATCAATC
CACGAATGTACCACAAAATTTGTCGGTTAAgttatgatttcttttttgaa
ggttttCTACTGTAGAAGAAAGACTGGATAATTACATTTAAAATATCGGC
AATTAAAGAACAACAAAAGCAcaattaatcaattaaaaccgaAGCTTTTT
CCCACTTTCTATTGTACTGCGATTGCCAGATCTTGATTGACATTTTCATC
CATGTCTCAAAAAT Run BLAST on NCBI transcript from alignment at sc0000108:198308..200323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010625 ID=TCONS_00010625|Name=TCONS_00010625|organism=Clytia hemisphaerica|type=transcript|length=2016bp|location=Sequence derived from alignment at sc0000108:198308..200323+ (Clytia hemisphaerica)
GCCAGACAAGGCTTGATTTCACAATTTCATTCTCAAGGTtgaaattatat
ttcaaaaataaggtTCAtaaaatatacacgtttttttttataagaacgtc
aaaaattttcaaagctttcggatgttcttagttttttggatttgaagcct
aaaaatgttcttaaaatgttcttattttcagcattttttgagcattttga
tgtaatttcttaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgtctccaaagccttagaatgttc
ttagaatgttcttaaatttttgggcctcgaagccttatgttcttatatag
tttgttcttataaaaaaaaaaacgtgtatccgtTTTCCCACTAGAATTTA
TAGAATagcaatttaaaaaacaaaacattttctttttatattaaATCGCA
AAGTATACTTCGTGAAGTCAAATTCTTTCAGGGACTGATTAATTTGAAAG
TTCCATCCATCAGCAATCTGTGTATGAAAGGCTCCATTCATTTATTTACC
AATTTGCAATGTCTCGCGTAATTGCTTTTTAAAGCatattaaacattttt
aaatgtcGTTGATGAAAAGGGCTTCAAAATCAATCGAACATGCGTTTAAA
TACTTTCCCTTTTGAATTAACGTATCAACGAATTGTCTCCAAACTATAAT
ATCGTAACTTTTTGTATACTTTGTCCAAATTTCACAATCCATCATTGTCG
TCTTCGAAATTCAAGGCATCCCATCTGACACACAATATTGTTTCAAAGTT
CATTTAATGTTCACCACatctatataacgttagatgaacgttatgGGCCA
GCTTGGATATCACCTAAAAGTTTCATGTCGTCTTTTCAAGGGATTTCAAC
ACCATTTTAATCAATCTTGCCTTTTTCAATATTGTTAGAAATTCTTCTAT
GAAAGATGCTTGATCCGCATATGAAAGATGCTTGATCCGCATCTTTTTTT
TTGCATCCTATCTATTTTGCAATCGTTTATTGTTTAAAGATAATCCGCGA
AGACCGACTCAAACTACTTCGCTTTAACGTATTATTATTTGCACAACAAC
TCTTCCTTGCTTTCTCAATCTCACCGCATGTTTTCTCGGGTGAATCAACT
TTAAAGTTTGCGCAAATGATATCTTCATCTATGCGACACTTTATGGAGAT
AATACCATCGTTTGGATAAGTCATATAGTTCATTTGTAACAGTTTAGGTT
TAACATTGATTATCTCCGTAAGGGGAACTTCGATCCTCGCCAAATCATTG
GCCTGGTGTACAATTTTCATACTAGTAATACACAACAGTCCTAAGTTACT
CCCTGAATCGTAGACGTGTAAACCATGGCTTAAGTTATAGCCTTCGGTTG
GTGTGCTGTAGATAACATAGCCTAGTGAATCAGTCTGTTTTGCTACTACG
GAATCCAGTCTAGGTCGGCGTCTACGAGGCTTTTCACGATATTGGACTAC
ATCTTCGGctatttcttttgatttgccACATCCCATGTTGATAAAAAAGG
TATGAAAACTCTTTGTATTGTCTGTGATGTGtgcaataaattcaaaattc
caGTTAACAAAGTATCCTTTTTGGTTTTGatctttgtaaaatattcttga
atatattttcaaaaaatcgttAGCCAACGTGCTTTCATCTCAAATATCAA
TCCACGAATGTACCACAAAATTTGTCGGTTAAgttatgatttcttttttg
aaggttttCTACTGTAGAAGAAAGACTGGATAATTACATTTAAAATATCG
GCAATTAAAGAACAACAAAAGCAcaattaatcaattaaaaccgaAGCTTT
TTCCCACTTTCTATTGTACTGCGATTGCCAGATCTTGATTGACATTTTCA
TCCATGTCTCAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010625-exon-sc0000108-1491911889:198308..198378 | TCONS_00010625-exon-sc0000108-1491911889:198308..198378 | Clytia hemisphaerica | exon |
| TCONS_00010625-exon-sc0000108-1510915933:198308..198378 | TCONS_00010625-exon-sc0000108-1510915933:198308..198378 | Clytia hemisphaerica | exon |
| TCONS_00010625-exon-sc0000108-1575043694:198308..198378 | TCONS_00010625-exon-sc0000108-1575043694:198308..198378 | Clytia hemisphaerica | exon |
| TCONS_00010625-exon-sc0000108-1491911889:198781..200323 | TCONS_00010625-exon-sc0000108-1491911889:198781..200323 | Clytia hemisphaerica | exon |
| TCONS_00010625-exon-sc0000108-1510915933:198781..200323 | TCONS_00010625-exon-sc0000108-1510915933:198781..200323 | Clytia hemisphaerica | exon |
| TCONS_00010625-exon-sc0000108-1575043694:198781..200323 | TCONS_00010625-exon-sc0000108-1575043694:198781..200323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:198308..200323 + |
Blast
The following BLAST results are available for this feature:
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