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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010619 ID=TCONS_00010619|Name=TCONS_00010619|organism=Clytia hemisphaerica|type=transcript|length=3411bpRun BLAST on NCBI protein sequence of TCONS_00010619-protein >TCONS_00010619-protein ID=TCONS_00010619-protein|Name=TCONS_00010619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp HWFNMATFSMKNIPMKNEEEEDKYFYQNQDFLQLSIKGQTQPYNVKVEPGRun BLAST on NCBI transcript from alignment at sc0000108:186931..275897+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010619 ID=TCONS_00010619|Name=TCONS_00010619|organism=Clytia hemisphaerica|type=transcript|length=88967bp|location=Sequence derived from alignment at sc0000108:186931..275897+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000108:186931..275897+ >TCONS_00010619 ID=TCONS_00010619|Name=TCONS_00010619|organism=Clytia hemisphaerica|type=CDS|length=73050bp|location=Sequence derived from alignment at sc0000108:186931..275897+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010619 vs. Swiss-Prot (Human)
Match: DLEC1 (Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2) HSP 1 Score: 295.049 bits (754), Expect = 8.532e-82 Identity = 276/1052 (26.24%), Postives = 470/1052 (44.68%), Query Frame = 1
Query: 40 PMKNEEE---EDKYFYQNQDFLQLSIKGQTQPYNVKVEPGFVALSGRNFCGITYYKTVTLVNKSGSCASFQWQNVDTVRCNITCDPSNGSIDGNSSMEFLVAITGKKEGRVDVEIPYHVQSSVTDSRLHLQAHFVGADIQIEGNDTNFGLIRLGDCVEREVTLVNTSPIEARWKM--SYTSYQD--PDSEYLQITPNEGVLGANSEETINLRFCPKEEVTFTGHLTC----DVADSKPCYQSIFGEAQRANVYAESSHVNIDTSFIDCPLAVEVTLCNAGLLPATCRFKPCSSENVE---IAYEVEEFTLEAHQKLTTKLFLTYRKMGELDTYIA--CLVEDMLDPVVFELSTDVQGLIVDVTVPN-LKDIENQSETVRNNDV-IEFGQSVVLGQKANALVVIENRSEISTTFDLSFQEFQSSRLPSPPEGTRKKEKRSNLGRMLHKSSPAFRSKTDL--QIQKEYSESTLKSGRGLALMCQPWYGSLSAYERKIVTVSCQSDVWGDYNDLLHCQIGDSIEKVIPVRVNIIGTPLTFQMTNEYP-------PIVRFGTHPSAGSDVKRSLRINNKSYVDIRXXXXXXXXXXXXXXXXXXXCFYGNPFPILDQDGNXXXXXXXXXXG----------------------------------DLVRVVLKEHEGRKSTQPFKVLNKQMVVPGQGYASLEISFTP----PQQVREEESYLGFTMGHISLKQKDKNGENGCYIRADGLDMLPFGVNMTACVQPPKMILEACDEEEFLFELKATELLDPGTCA--LREKVSLSRRFVLSNRSGTTITFGCRINEPFEMAVTKDKMAA-HSKKGKTEKN-----------KFTLKPNQNLEFRVWLH----------------MTPVLVKKNAIDEKMVTLTEDLIVSFDDKGVQSYPMTCLMHYPILELPQKLIDFGVCFVGQRRELMLKITNSSKALLYWKIAIDKTCSQTARDVFKLD-TSTFCHSNKTNSFIEAEHSDEVIIQFLAKHNIEYECRVIVTSIFHELFLKSKGSVITVRGQGSYDE 2907
P+ +E E Y + L++ +KG +P+ V +EP + + G N+ GI K + N S S + W + I +P G I+ + +F + TG G ++ ++ S + LH++A F G + I + FGL+RLG + + N S + A W+M S S Q+ D I P+ G L + E +++ E HL +V + Y ++ E Q+ +VY +SS V + ++ P +TL N LLP + E + + L ++ KL LT EL T++A C V M P+V +S QGL V +T+ D + ++ ++FG +V L + +++ NRS I T F L F+ F S P KK N+ L K+ R + L + Q ++ ES L G+G A G L Y++ + ++ +++WG+Y D L C +GD + +VIPV + +G P++ T Y P +RFGT S G V R+LR+NN S DIRLDW+T++ +D +D+L++L FYG PFP+ DQ GNE+V + E G L+ V+L+ HEG S + + KQ+VVP G +++ ISFTP P+ + + E G+ +G +SL K + G R + P +++ + V+P ++ +E F+ +A++L+ C+ L E V+ + L+N + F ++ PF +V++D + H G +K + L+ +N+ V + V ++++A E+ + T++L++ + ++ Q P+ ++ P L+L +DFG CFV Q+R + + N S YW + + + A F++ S + N+ S + + F A+ + YE ++V + E K + +RGQGSYDE
Sbjct: 722 PVSSEAESLGHSSYSVDDVIVLEIEVKGSVEPFQVLLEPYALIIPGENYIGINVKKAFKMWNNSKSPIRYLWGKISDCHI-IEVEPGTGVIEPSEVGDFELNFTGGVPGPTSQDLLCEIEDSPSPVVLHIEAVFKGPALIINVSALQFGLLRLGQKATNSIQIRNVSQLPATWRMKESPVSLQERPEDVSPFDIEPSSGQLHSLGECRVDITL----EALHCQHLETVLELEVENGAWSYLPVYAEVQKPHVYLQSSQVEVRNLYLGVPTKTTITLINGTLLPTQFHWGKLLGHQAEFCMVTVSPKHGLLGPSEECQLKLELTAHTQEEL-THLALPCHVSGMKKPLVLGISGKPQGLQVAITISKESSDCSTEQWPGHPKELRLDFGSAVPLRTRVTRQLILTNRSPIRTRFSLKFEYFGS-----PQNSLSKKTSLPNMPPALLKT---VRMQEHLAKREQLDFMESMLSHGKGAAFFPHFSQGMLGPYQQLCIDITGCANMWGEYWDNLICTVGDLLPEVIPVHMAAVGCPISSLRTTSYTIDQAQKEPAMRFGTQVSGGDTVTRTLRLNNSSPCDIRLDWETYVPEDKEDRLVELLVFYGPPFPLRDQAGNELVCPDTPEGGCLLWSPGPSSSSEFSHETDSSVEGSSSASNRVAQKLISVILQAHEGVPSGHLYCISPKQVVVPAGGSSTIYISFTPMVLSPEILHKVEC-TGYALGFMSLDSKVEREIPGKRHRLQDFAVGPLKLDLHSYVRPAQLSVELDYGGSMEFQCQASDLIPEQPCSGVLSELVT-THHLKLTNTTEIPHYFRLMVSRPF--SVSQDGASQDHRAPGPGQKQECEEETASADKQLVLQAQENMLVNVSFSLSLELLSYQKLPADQTLPGVDIQQSASGEREMVFTQNLLLEYTNQTTQVVPLRAVVAVPELQLSTSWVDFGTCFVSQQRVREVYLMNLSGCRSYWTMLMGQQEPAKAAVAFRVSPNSGLLEARSANA---PPTSIALQVFFTARSSELYESTMVVEGVLGE-----KSCTLRLRGQGSYDE 1747 The following BLAST results are available for this feature:
BLAST of TCONS_00010619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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