TCONS_00010614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010614
Unique NameTCONS_00010614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010614 ID=TCONS_00010614|Name=TCONS_00010614|organism=Clytia hemisphaerica|type=transcript|length=376bp
TTTATAGAGCTGAATAAGTGCTCGCCGAAAAAAAGGATTGGAAAAAGAAC
TTACTATCTTGTGAAGTGGTACGGCTGGGGAAGTGACGATTGCACATGGG
AACCCACTCAAAATTTATTGGACGTCAGACTTTTACACTTTTGGGAACAT
CCAGCACCTGACATGAGGTAAGTTGATTATTATATTGAGCGTCTACTCTC
TTGCTTTGAGACCGCCCTAAAAGAGCGACTGCGAAGTGTGAAAGTTCTGG
ACTTTCCACTAGCTATTTTTCGGTATCTTTTCCATGGGAGGGGGACGATA
AGAAAAGAGGGAATAAATCTCTCAATGAGGAAGATTTTGATCCTCACTGG
TTCCCCAACAATTGGCATTCTGGGCT
Run BLAST on NCBI

transcript from alignment at sc0000108:45138..45853+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010614 ID=TCONS_00010614|Name=TCONS_00010614|organism=Clytia hemisphaerica|type=transcript|length=716bp|location=Sequence derived from alignment at sc0000108:45138..45853+ (Clytia hemisphaerica)
TTTATAGAGCTGAATAAGTGCTCGCCGAAAAAAAGGGTTTGTTGTTATCT
TGtaaattttgtttgtaaactgtgagatttattttttatattctttttac
tttttttcatattggaatcttttttttttgttcgcgatttttgttatttt
agatTGNGTGTTGATTAGAATTTTCTAGAAAATTTTTTGTCGTTGTTTTA
GATTGGAAAAAGAACTTACTATCTTGTGAAGTGGTACGGCTGGGGAAGTG
ACGATTGCACATGGGAACCCACTCAAAATTTATTGGACGTCAGACTTTTA
CAGTAAGCTGATAATTCTTTTCATGACTTTTCACTCTAtttattgaatgt
tttaaatGGATTGTTTGGGATGTATATACAAAAGAGAATGATGATCTGTC
GAAGCTAAGTGGGAAATCTTTTGTGCTTATCACACTTTCgatattttttc
aactttttccaaaTTAGTTTTTCACAGCTTTTGGGAACATCCAGCACCTG
ACATGAGGTAAGTTGATTATTATATTGAGCGTCTACTCTCTTGCTTTGAG
ACCGCCCTAAAAGAGCGACTGCGAAGTGTGAAAGTTCTGGACTTTCCACT
AGCTATTTTTCGGTATCTTTTCCATGGGAGGGGGACGATAAGAAAAGAGG
GAATAAATCTCTCAATGAGGAAGATTTTGATCCTCACTGGTTCCCCAACA
ATTGGCATTCTGGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005949XLOC_005949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010614-exon-sc0000108-1491911889:45138..45173TCONS_00010614-exon-sc0000108-1491911889:45138..45173Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1510915933:45138..45173TCONS_00010614-exon-sc0000108-1510915933:45138..45173Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1575043694:45138..45173TCONS_00010614-exon-sc0000108-1575043694:45138..45173Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1491911889:45339..45439TCONS_00010614-exon-sc0000108-1491911889:45339..45439Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1510915933:45339..45439TCONS_00010614-exon-sc0000108-1510915933:45339..45439Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1575043694:45339..45439TCONS_00010614-exon-sc0000108-1575043694:45339..45439Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1491911889:45615..45853TCONS_00010614-exon-sc0000108-1491911889:45615..45853Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1510915933:45615..45853TCONS_00010614-exon-sc0000108-1510915933:45615..45853Clytia hemisphaericaexon
TCONS_00010614-exon-sc0000108-1575043694:45615..45853TCONS_00010614-exon-sc0000108-1575043694:45615..45853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:45138..45853 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15738	1.4171	2.1974	0	0	0	0	0.353151	0.876626	1.094	2.72204	1.13216	1.574	0.462183	0.967153	1.40306	3.47634	1.39107	0.4144	0.963027	3.21363	2.13943	3.38117	0	0.608806	0.347282	1.67607	3.45985	3.27097	1.17157
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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