TCONS_00010613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010613
Unique NameTCONS_00010613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010613 ID=TCONS_00010613|Name=TCONS_00010613|organism=Clytia hemisphaerica|type=transcript|length=3806bp
GGGGACCGTTGGTGTCTGCTCCTGATGAACTGGATCTGCCGATGGATTTA
CGACGACGTGAGGTGTAACATTCCTCGATTGTCCGAGTGGTGGACAGGCA
TGAACAGATGGAGCTCTGACTGCTTGAGGACGAACGGGAACAAATTTGCG
AAGGAACTTTCTGTTGCGGATTGTCACTCTGCCAGATCCGTCAACTCTCA
CGACGTATTGGTGATGCTGTCGGACCTCAATGATAACTCCTGTCCTGTCC
CACTTTCTTGGATGGTTGCCAACCTGATTCTGAAGGCGGACACGGTCTCC
AACTTGAAGGGGTGGGATGAGTCGGGTACCGAGTGATAGTCGTTCAGCGA
TCTTGAAGTGGCGAACTCTCAGTGCGTCTTCTCTGTTTTGTAGTGTGTCC
TGCCATGTAGGGTGCGGTTGATATCGTCCTGGGAGAATTGGAATGGTACT
TCTTGTTGGCCGGCCGAAGATACACATTGCAGGTGAGATACGAGTTTCGG
GATCAGGTGTGTTACGATATGTCAACATTGCACGTTGGAAAGCGTCCGTG
TTTAGCTCCCCATTCGGACCAGTGTTGCCGATGATCATTCGTTTCACGGT
CTTGACTCCGACTTCTGCCCGACAGTTACTATGTGGAAAAGCAACGGAGG
AGATGCGGTGTCGAACTCCCCAGGACTTGAGGAAGTCTTCAGTGTTCTTT
GCGACATACTCTGGACCGCCATCTGAAGTAAGTTCATCTGGGATGCCGTA
TGTAACAAAAGTGCGACGGAGACTGTTAATGAGTCCCTTGCTCCCTTCAT
GTGCTCTTTCAACTATCGGCCAGTTGGAGTAGCGGTCGACGGAGATGGAA
TAGATGTGACCCTTGTGATGGAAGAAATCAGAACATATGAGTTGAAACGG
GTATTCTGGAAGGATAGGCGGTGTTGGTGGAAGGTGAGGTTGTGAGGGGG
CGATTGTGTTGCAGTGATGACAACGTGAACGTACATCTTTGATGTCATTG
GTTATCCCCGGCCAAAACACTGAGGCTTCTGCGTGTGATATCATTGATCC
AACTCCTTGGTGGGCAGCATGGAGATTGTCGAGGATCTGTGAACGTAGTG
ATATTGGAACTATTATCCTTTGCTTGTAGATGGGGATGCCCTCGATTGTC
CATAAGTCATTACGGTACCGGAAGTAGGGTTGAAGTGTAGGAGGGAGGTG
TCTGGCTTCATCTGGGAATCCCTTTTCGATGGCAGATGTTAACAGTCGGG
TATCATTGTCACTTGCAGATGCCAACTTGACCATATCCCAGGTGACGGTT
ACGGTTGAAGAAATGGTAGCTACAATTGAAGATTTGATATTCGCTTCCAG
CTCAACATCAGTGTTGGATTGATCTTCTGGTAAGGGCTCGAGGATTTGAT
GCGCAGGCAGTGGGCCAAATCCTTCTTCTGTGGATATTGCTGATATATCG
TCAGGCAGTGGGTCAACATCAGGATTTCTTGGGCCACTGGGATGTCTTGA
GGTACAGTCTGGGGCACGATGCTTTCTCCCCGGGATGTGATGCATCTTGA
AGCGGTAGGGCAGGGTCTTTTCTTTCAGATTGCGAAGACGACTGTTTGGG
ATGTCGTGGAGGGATCTGTTGGAGAACAACCCAAGGAGTGGCTTGTGGTC
GACTGCTATCGTGAGATCATCGCAACCAAGAGCGAAATGCTTTGCCTTGT
CCAGACCATAGGTAACAGCAAGGGCTTCTCCTTCGATAGGCGCATAGTTG
GATTCTGCAGGTGATGTGAAGCGGCTTCCAACCAACACGACTTTCCATCC
TGTTGGGCAGCAAAAGGGCTTGACACCATCACAAGAACAGTGTTTCTGGA
AGAGCCAGCAGCCGATTCCAAGTTTGGACCAATCAGTTGCAAGACACGTA
GGTTTCGATTTGTCAAAGATGCGGACACCATTCTTTATCTCGTCGACGAT
TGTCTGTTTTGATTCTTCAAAGAGTTGCTGTAAAGAATCGTCCCAATAAA
ATGATGACTTTGGCTTGAGGAGATCTCGAAACGGTTGCATGTGTGATGCC
ATACTGAACGTGTATGCGACCTGGTTTACCAGCCCGAACCAGGAGCGAAT
GTCTGTGATGTTTTTTGGGGTTGGGAATTCCCTAATTGCACGTAGGATGC
CATCGCTGGGTTGGACTTCAGTTGGAGTGATTTTGAAGCCTGAGAATTCG
ACGGTGTCTGCTCCGAGGATGAATTTGCTTGGGTTTTGGATGATGCCATT
CTTTCCGCATAGGTCGAGCCATCGAGCAGCCTGGAAGAAACTTCTTTCTA
GTGAATCATCCCACAATAAAGCGTCGTCGATAACTTTGATCTTGTTGGGG
AAGTCTGCAGCTATCTCGTCAAAGCGTCGGGTGTAGGCATCGCCGGATGA
AACATAACCTTGTGGTGCCGTACAGTAACGATAACGACCCCAAGGTGTAA
TAAAGGTTGTGAAATGTCTGTCCTCTGGTTGAAGAGGGACACTATGATAC
CCGTTCCAAGCATCAGATACTGTCTTCTTAACTCCTTCAGGGATGGTGCG
AACCTGGTGGAAAGGGGATTGAGTGTGGTGGGTCTCTCGAGTAGCATGAG
CATTTACAGGTTGAAGGTCGACCGTTCTGCGTGGTTCCCCATTCTTCTTC
GAGCAAACAACCATTCTGTGGCACCACGTGATTGGATCTCCAACTGGAAC
AGGCTCAATGACTCCAAGACGGACATCTCGGTCAAGGTCAGCTTTCACTT
TTTCCTGCCAATGTACTGGTACTGGTATCGGTGAGTGATGAGCGACTGGG
TCAGCATTTGGATCTATACGGAGCTTCAGTGGTGGACCACTCATGAGCGG
AAGAGGTTGATGCTCACAAGTGTTGAATGTACTTGATTTGTAGTAGTCTA
ATAAATAATCCTGGAGCTTCTCGCGGTTTTCCGGCGTTGCAGGGAAAGGG
AGCTTTAAAGGTAAAGGTGGCGGGAGTTCTCGTTTTGGGCAGTTGCATGA
AGGGTGTTTGTCTGTGATGAGATTGATCGACGAAGATACTCCACCGACTG
TGGGAAAGTTCTCTGAAATCATGCCAAGGTCGATGCAGGCGGATTTGCTT
AGGAAGACGTTGCTGGAATCTTTTGTGATGTAGGTCATCTGCCTTGTCTC
GGTCATGCTGTTGTTCTGATCGACGCCAGAGATACGAAGGATGATGGCAC
CAAGGATGCTAATAGGTCTGTCGTTCGCGGCATGcatcttcattttcact
ggaatgAGGTCATTTTTCGTCAGACCGAGTTGTTGAACGATCTTGAATCC
AGCTAGGCAACTCTGACAGCCGGTATCAGCCATTGCAGGTACTTTGATTG
ATGATTCTGGATTGTTGATGATAGGCTTGAACCCAAGGTCTACATAGTCC
TGATCCTCCACTCTGATTGACAGCTTGACGAATGGTTGTGGGCTTGATGG
ACGTTGTTGCCATTGATTGGTTGACTTCTCATGGACGTGGTGATCAGCGG
AGACGCTATTGACAGTGGCAGAGCATAGCGCGTCGTAGATGGCACCTTGA
TTATTGGTCACAGTCAGGTCTTCTTTGGGTGCCTTGGGTTTGTCTTTACT
ACGGCAAACATCCTCAAAATGATGGAGACGGTTACAATGACCGCATTGGT
GGTTGTAGGCGGGACAGGCATTCTTGCGCCTTTGTGCAGTTGATTTGACA
CCATGTTGCTTTGGAAGGGTGGAACGACTTTTCTGGTAGCTACTACGTAT
GGCATTACCAGTGGCTTGGTTCTCCAAAAGTTTGTTTGCGGAACGTTTAC
CGGCTT
Run BLAST on NCBI

transcript from alignment at sc0000108:30723..34573+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010613 ID=TCONS_00010613|Name=TCONS_00010613|organism=Clytia hemisphaerica|type=transcript|length=3851bp|location=Sequence derived from alignment at sc0000108:30723..34573+ (Clytia hemisphaerica)
GGGGACCGTTGGTGTCTGCTCCTGATGAACTGGATCTGCCGATGGATTTA
CGACGACGTGAGGTGTAACATTCCTCGATTGTCCGAGTGGTGGACAGGCA
TGAACAGATGGAGCTCTGACTGCTTGAGGACGAACGGGAACAAATTTGCG
AAGGAACTTTCTGTTGCGGATTGTCACTCTGCCAGATCCGTCAACTCTCA
CGACGTATTGGTGATGCTGTCGGACCTCAATGATAACTCCTGTCCTGTCC
CACTTTCTTGGATGGTTGCCAACCTGATTCTGAAGGCGGACACGGTCTCC
AACTTGAAGGGGTGGGATGAGTCGGGTACCGAGTGATAGTCGTTCAGCGA
TCTTGAAGTGGCGAACTCTCAGTGCGTCTTCTCTGTTTTGTAGTGTGTCC
TGCCATGTAGGGTGCGGTTGATATCGTCCTGGGAGAATTGGAATGGTACT
TCTTGTTGGCCGGCCGAAGATACACATTGCAGGTGAGATACGAGTTTCGG
GATCAGGTGTGTTACGATATGTCAACATTGCACGTTGGAAAGCGTCCGTG
TTTAGCTCCCCATTCGGACCAGTGTTGCCGATGATCATTCGTTTCACGGT
CTTGACTCCGACTTCTGCCCGACAGTTACTATGTGGAAAAGCAACGGAGG
AGATGCGGTGTCGAACTCCCCAGGACTTGAGGAAGTCTTCAGTGTTCTTT
GCGACATACTCTGGACCGCCATCTGAAGTAAGTTCATCTGGGATGCCGTA
TGTAACAAAAGTGCGACGGAGACTGTTAATGAGTCCCTTGCTCCCTTCAT
GTGCTCTTTCAACTATCGGCCAGTTGGAGTAGCGGTCGACGGAGATGGAA
TAGATGTGACCCTTGTGATGGAAGAAATCAGAACATATGAGTTGAAACGG
GTATTCTGGAAGGATAGGCGGTGTTGGTGGAAGGTGAGGTTGTGAGGGGG
CGATTGTGTTGCAGTGATGACAACGTGAACGTACATCTTTGATGTCATTG
GTTATCCCCGGCCAAAACACTGAGGCTTCTGCGTGTGATATCATTGATCC
AACTCCTTGGTGGGCAGCATGGAGATTGTCGAGGATCTGTGAACGTAGTG
ATATTGGAACTATTATCCTTTGCTTGTAGATGGGGATGCCCTCGATTGTC
CATAAGTCATTACGGTACCGGAAGTAGGGTTGAAGTGTAGGAGGGAGGTG
TCTGGCTTCATCTGGGAATCCCTTTTCGATGGCAGATGTTAACAGTCGGG
TATCATTGTCACTTGCAGATGCCAACTTGACCATATCCCAGGTGACGGTT
ACGGTTGAAGAAATGGTAGCTACAATTGAAGATTTGATATTCGCTTCCAG
CTCAACATCAGTGTTGGATTGATCTTCTGGTAAGGGCTCGAGGATTTGAT
GCGCAGGCAGTGGGCCAAATCCTTCTTCTGTGGATATTGCTGATATATCG
TCAGGCAGTGGGTCAACATCAGGATTTCTTGGGCCACTGGGATGTCTTGA
GGTACAGTCTGGGGCACGATGCTTTCTCCCCGGGATGTGATGCATCTTGA
AGCGGTAGGGCAGGGTCTTTTCTTTCAGATTGCGAAGACGACTGTTTGGG
ATGTCGTGGAGGGATCTGTTGGAGAACAACCCAAGGAGTGGCTTGTGGTC
GACTGCTATCGTGAGATCATCGCAACCAAGAGCGAAATGCTTTGCCTTGT
CCAGACCATAGGTAACAGCAAGGGCTTCTCCTTCGATAGGCGCATAGTTG
GATTCTGCAGGTGATGTGAAGCGGCTTCCAACCAACACGACTTTCCATCC
TGTTGGGCAGCAAAAGGGCTTGACACCATCACAAGAACAGTGTTTCTGGA
AGAGCCAGCAGCCGATTCCAAGTTTGGACCAATCAGTTGCAAGACACGTA
GGTTTCGATTTGTCAAAGATGCGGACACCATTCTTTATCTCGTCGACGAT
TGTCTGTTTTGATTCTTCAAAGAGTTGCTGTAAAGAATCGTCCCAATAAA
ATGATGACTTTGGCTTGAGGAGATCTCGAAACGGTTGCATGTGTGATGCC
ATACTGAACGTGTATGCGACCTGGTTTACCAGCCCGAACCAGGAGCGAAT
GTCTGTGATGTTTTTTGGGGTTGGGAATTCCCTAATTGCACGTAGGATGC
CATCGCTGGGTTGGACTTCAGTTGGAGTGATTTTGAAGCCTGAGAATTCG
ACGGTGTCTGCTCCGAGGATGAATTTGCTTGGGTTTTGGATGATGCCATT
CTTTCCGCATAGGTCGAGCCATCGAGCAGCCTGGAAGAAACTTCTTTCTA
GTGAATCATCCCACAATAAAGCGTCGTCGATAACTTTGATCTTGTTGGGG
AAGTCTGCAGCTATCTCGTCAAAGCGTCGGGTGTAGGCATCGCCGGATGA
AACATAACCTTGTGGTGCCGTACAGTAACGATAACGACCCCAAGGTGTAA
TAAAGGTTGTGAAATGTCTGTCCTCTGGTTGAAGAGGGACACTATGATAC
CCGTTCCAAGCATCAGATACTGTCTTCTTAACTCCTTCAGGGATGGTGCG
AACCTGGTGGAAAGGGGATTGAGTGTGGTGGGTCTCTCGAGTAGCATGAG
CATTTACAGGTTGAAGGTCGACCGTTCTGCGTGGTTCCCCATTCTTCTTC
GAGCAAACAACCATTCTGTGGCACCACGTGATTGGATCTCCAACTGGAAC
AGGCTCAATGACTCCAAGACGGACATCTCGGTCAAGGTCAGCTTTCACTT
TTTCCTGCCAATGTACTGGTACTGGTATCGGTGAGTGATGAGCGACTGGG
TCAGCATTTGGATCTATACGGAGCTTCAGTGGTGGACCACTCATGAGCGG
AAGAGGTTGATGCTCACAAGTGTTGAATGTACTTGATTTGTAGTAGTCTA
ATAAATAATCCTGGAGCTTCTCGCGGTTTTCCGGCGTTGCAGGGAAAGGG
AGCTTTAAAGGTAAAGGTGGCGGGAGTTCTCGTTTTGGGCAGTTGCATGA
AGGGTGTTTGTCTGTGATGAGATTGATCGACGAAGATACTCCACCGACTG
TGGGAAAGTTCTCTGAAATCATGCCAAGGTCGATGCAGGCGGATTTGCTT
AGGAAGACGTTGCTGGAATCTTTTGTGATGTAGGTCATCTGCCTTGTCTC
GGTCATGCTGTTGTTCTGATCGACGCCAGAGATACGAAGGATGATGGCAC
CAAGGATGCTAATAGGTCTGTCGTTCGCGGCATGcatcttcattttcact
ggaatgAGGTCATTTTTCGTCAGACCGAGTTGTTGAACGATCTTGAATCC
AGCTAGGCAACTCTGACAGCCGGTATCAGCCATTGCAGGTACTTTGATTG
ATGATTCTGGATTGTTGATGATAGGCTTGAACCCAAGGTCTACATAGTCC
TGATCCTCCACTCTGATTGACAGCTTGACGAATGGTTGTGGGCTTGATGG
ACGTTGTTGCCATTGATTGGTTGACTTCTCATGGACGTGGTGATCAGCGG
AGACGCTATTGACAGTGGCAGAGCATAGCGCGTCGTAGATGGCACCTTGA
TTATTGGTCACAGTCAGGTCTTCTTTGGGTGCCTTGGGTTTGTCTTTACT
ACGGCAAACATCCTCAAAATGATGGAGACGGTTACAATGACCGCATTGGT
GGTTGTAGGCGGGACAGGCATTCTTGCGCCTTTGTGCAGTTGATTTGACA
CCATGTCCTTTCTTGCCACAGTAGGAACAAAGACGGTTTTCTTGGTCAGG
TTGCTTTGGAAGGGTGGAACGACTTTTCTGGTAGCTACTACGTATGGCAT
TACCAGTGGCTTGGTTCTCCAAAAGTTTGTTTGCGGAACGTTTACCGGCT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005948XLOC_005948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010613-exon-sc0000108-1491911889:30723..34426TCONS_00010613-exon-sc0000108-1491911889:30723..34426Clytia hemisphaericaexon
TCONS_00010613-exon-sc0000108-1510915933:30723..34426TCONS_00010613-exon-sc0000108-1510915933:30723..34426Clytia hemisphaericaexon
TCONS_00010613-exon-sc0000108-1575043694:30723..34426TCONS_00010613-exon-sc0000108-1575043694:30723..34426Clytia hemisphaericaexon
TCONS_00010613-exon-sc0000108-1491911889:34472..34573TCONS_00010613-exon-sc0000108-1491911889:34472..34573Clytia hemisphaericaexon
TCONS_00010613-exon-sc0000108-1510915933:34472..34573TCONS_00010613-exon-sc0000108-1510915933:34472..34573Clytia hemisphaericaexon
TCONS_00010613-exon-sc0000108-1575043694:34472..34573TCONS_00010613-exon-sc0000108-1575043694:34472..34573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108supercontigsc0000108:30723..34573 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16804	1.06761	2.19788	1.77754	1.14389	1.26128	0.894463	1.16762	1.04997	1.35896	1.11918	1.62621	1.24244	0.924044	0.808925	1.31421	1.37396	1.32976	1.47572	1.65155	1.76915	2.24614	0.613916	0.853358	1.66257	1.5365	2.60447	2.17597	2.57305	2.06668
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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