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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010612 ID=TCONS_00010612|Name=TCONS_00010612|organism=Clytia hemisphaerica|type=transcript|length=222bp
CAAGAAGTTAGTATATTCCTATCTTTTCTTGTAGTTGCTTTGCCAATCAG
CTGACTGATTAGTGTTTGATTTTTAATGGAAATGTTAAGATAAGTTGATT
GATAGTATGAATGGCTTCTATTTTGGAACCAAAAACACTTTAACTGTGGA
TAAAAGGGTATCGTAAAACGAATGATGGAATCCGACAAAGAAGAATTCAA
ATCGCAGTCGTGGGGTgtataa Run BLAST on NCBI transcript from alignment at sc0000108:3456..7082+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010612 ID=TCONS_00010612|Name=TCONS_00010612|organism=Clytia hemisphaerica|type=transcript|length=3627bp|location=Sequence derived from alignment at sc0000108:3456..7082+ (Clytia hemisphaerica)
CAAGAAGTTAGTATATTCCTATCTTTTCTTGTAGTTGCTTTGCCAATCAG
CTGACTGATTAGTGTTTGATTTTTAATGGAAATGTTAAGATAAGTTGATT
GATAGTATGAATGGCTTCTATTTTGGAACCAAAAACACTTTAACTGTGGA
TAAAAGGGGTaaaatctttaactttttttggctgTTCTAATCTAGCTaaa
caaattatattttcatcAGCTCTTATCTGACAAATTAGAGAAGACTCTAA
GATATTGTATATAGTTTTACCAAGCctagactttttgataaaatatacCA
AAGTTAGTCTTTAAACAAAATGAAAGTAGACATACAGGCACAAGTGCCTG
GCTATATATTTATCTAGAGTATTTTTGTAGTGGGAAATTCTGAGACAAAT
ATTTATgtatttttgcttctttttcaaGTATAGTAGTGATATGATATTTA
TACTACAACTCTGTCTAGACATCCTGTACTTGACAGTCTTGTGCTGTTGT
GCCAAAGGAGGCAGGCCAGGTATCCCAAAATTCACTGGATACAACAGAGT
GCGTGTAAAAATGGCGGAACGTCACGGTAAAATATTAGTCTTAACACTGG
ACAAAGGGGCCCATCCATTTAGAACTACATACTGAGGGGTAGAGAGGggg
ggttaagcaaaagtgcaTTCATTTGTTCTATCTATTTATGATAATAGCGT
GGCAAAAACTTTTTATTGTGATTGCTATATGTCAgacagacgtccgcgct
cgataggatcgatcatcggaacggctcgatgacggatcgatatgtgatcg
atggattacttaacgatccggataggagatcNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNttgatccattatcgagctagtatttcaatcgagtatatcgattcg
tcatcgatcgttaatcgatttgttatcgatcgtaaatcgagtatgagtcg
atagggtcgataagatcgataaaagatcgataactaatcataagctttaa
aaaatcttgagtatcgatcctctatcgatctcctatccggatcgttaagt
aatccatcgatccgtcatcgagccgttccgatggtcgatcctatcgagcg
cggacgtctggtatATGGATGACGCCAAAGTCTGAAAGTGTATAATTTAG
TTTTGCACGTGACTTTTTCTGTTTCCAATCTAGTgcatatctgacagggt
tgtatattttttgtcattatatTGATGTTGAAGTTAGTGGCTGGAGTGTT
TCATTATTCAATGATATGATAATATTGGTTACAGTTGGCTAGAAAAAGTA
TGGTCATTTCTATGGCTAGCTTTACTCTCTCGTGTACTACCAAATTGCTG
GGGGTTGGAATAAGTGAGAATTCCTAaatgtaaaatttgtaaaaagaaGG
CTtttacagcagaattagggcaaaagagggaactttcaaaaacatttttc
caaaaatttatgAGCGGAGGGGTGGAAATAAGaattttgggtgaaaaaat
taattagctgGGGCGCTTATAAGGTATCAGAGAGTACGTAATTTCACTGT
TTTGAGATTTCTGTTACAATTTTTCACAGAGAATAgatttgctcaaattt
tttgtttttttttaattacgtAGTGGTTCATGGTCATTAAGGTGGCTAga
ataggcatggtcatttcgatggctagctttgcgtaatttcaattttttag
gagaattttgttacaatttttcatagagttttgctcaaatgttttttttt
caaataacgtAGTGGTTCATGGTCACTAAGGTGGCTAgaataggcatggt
catttcgatggctagctttacgtaattttgatttttttggagaattttgt
tacaacttttcATTGAGTTTtgctcaaatgttttttttttttcaaataac
gtAGTGGTTCATGGTCACTAAGATGGCTAgaataggcatggtcatttcaa
tggctagctttacgtaattttgattcttatacAGAATTTTGCTACAATTT
TTCATAGAGATTtgctcaaatgttttttttttcaaataacagAGTGGTTC
ATGGTCACTAAGGTGGCTAGAATAGGCATGGTTATTTTAATGGCTAGCTT
tacataatttcaatttttttggagaattttgttacaattttcataaagtt
ttgttcaatgtttttttattcaaataacGTAGTGATTCATAGTCACTAAG
GTGGCTAGAATAGACATGGTCATTTCGATGGCTAGCTTTAcgtaatttca
atttctttggaGAATTTAGTTCAAATAACATAGTGGTTCTTGTTCACACA
GGTTACTAGGATCATCCTTTAAGCGATTGATCTACCAATTTTGTTTGATG
tctattttagcttttttccCGTCACTTTCCATGGCTATAACAAAATTTTt
ctgaagtaaacaaaagaaaaaactgcTGGATTAAGTGTCAATCAAAAGTG
TCATCTCCTAAAAAATTAAcgcaatttcaattttttttaaagatttttca
aaatgattacTTTTTTATTGCTAGCCTTGcataattttaaatgtttttga
taCATTCATTACAATTTGTCAAAAGTATTTGATCAAATTAATTAATATTC
TAATGGTTCTTGGtcacaaaaaagaaaagcaatgGTCTTCTATGGCTAGC
TTTACCTTAATTTAgagattttgacaaaaaatgatttGGTAGTAACCATC
TGTTATCTTTTACACAATCACAAGACCTTGCAAAATGAGATTTGGGCTGT
TTCAGGCTGTTCGGGCTAAAATTTCCTCTTTTTaggcaattttaaaattt
gagattttaCTTGCAGgtgtttttcaaatattgattccttcaaagttttt
tgttttaaaattaaattagataaaaaaacaGTATGATGCAGTTCCTAATG
CTATCAATAATGGTAGGACTAGTACTAGTAGTAGTCATGTAGATTGTGAA
TACATAATAAGGGAAAGTgtaatataattttttacctttttttaatgTGT
CTAAAACTGATAGAAATTAGGGATGTTATAGctagttttttgcaaaattg
acATGAAAAGTAAAGGTAATTTTCTTATATAGTGTAACTTCCAGTGGGAT
TTCATTCATATCTTCAGCACAGAAAGTTATTTACTGTTAGTTGACTCTTT
TTTATTGAAAGCTGCTACATTTTTTCTTGGGATTTCGAAATTGCTCTAAT
ATACCTTTCATTCCGTAAAGTGAAATTTTTAcctctttggaaagaaaaat
tgagtggactattttaaagctttgtTAAGCGATAATTAGCaaagtttttc
ttctatttGTCCAGTGAAAATTGTCCTTATTTTTCAGCGTCCTTTTTTCC
CTTGGTTGGTATTTTTATCCTATTAATATCGTGTTATAATGTAATTTATT
CTATATTTTCTAGTATCGTAAAACGAATGATGGAATCCGACAAAGAAGAA
TTCAAATCGCAGTCGTGGGGTgtataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010612-exon-sc0000108-1491911889:3456..3613 | TCONS_00010612-exon-sc0000108-1491911889:3456..3613 | Clytia hemisphaerica | exon |
| TCONS_00010612-exon-sc0000108-1510915933:3456..3613 | TCONS_00010612-exon-sc0000108-1510915933:3456..3613 | Clytia hemisphaerica | exon |
| TCONS_00010612-exon-sc0000108-1575043694:3456..3613 | TCONS_00010612-exon-sc0000108-1575043694:3456..3613 | Clytia hemisphaerica | exon |
| TCONS_00010612-exon-sc0000108-1491911889:7019..7082 | TCONS_00010612-exon-sc0000108-1491911889:7019..7082 | Clytia hemisphaerica | exon |
| TCONS_00010612-exon-sc0000108-1510915933:7019..7082 | TCONS_00010612-exon-sc0000108-1510915933:7019..7082 | Clytia hemisphaerica | exon |
| TCONS_00010612-exon-sc0000108-1575043694:7019..7082 | TCONS_00010612-exon-sc0000108-1575043694:7019..7082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000108 | supercontig | sc0000108:3456..7082 + |
Blast
The following BLAST results are available for this feature:
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