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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010608 ID=TCONS_00010608|Name=TCONS_00010608|organism=Clytia hemisphaerica|type=transcript|length=1287bp
gttgtATTGCCAGTATTCATAATTTGATAATTAAAAATCTTATCTTAGTT
TGTGTGTTAGAATTTGTTAGTACTACTtataaaatgaagatgaaaaagga
aGCAGAATAGTAAGTTATATTTATAGTACAAAGGTCCTTTTATATTAAAG
CCTTCTGAGTTCATTTATGTAGAATTCTAACGAGAGAAAGTTATAGGCTC
TTGAAGGTATAATTTGTTAGAGTATGGTAAAACCTTTGAGCTTATAATTT
TCGATATGATTATTCTGTGTAAAAGTAGCATAATTTTTCTAGCCTTTTCT
TCTGTGTTCTTCACGTTTCAAAGTAATATTGGggagggggctgaagttta
ggggggaatttgaaaatttgagctctagattgttgaaaatgcactcaaaa
taaaatgtttccGAGTAAAAACAACATAGAATTTTTGTCCTACATTTCCA
ATGagcattttttgggtttttgcaTCTCCATAAGCTTGTTTTGGGCCTGA
GATACAAAAGTGATCGATACATCGGTTTTTTCAATTCAGCAAGTCAATCA
CTTGGGAATGTATTAAATTTACTTCATTGTATAGACGATTGATTTTGGTC
AAGTCTCGATCCAGCTCCTTTAAAGTGTCTACTGATACTTTGTAGTTCCT
TGCATGAAATAAGCACACACCAAAAGAGAATATTGAGCTAAATGCTCCTA
GTAATTTAGTGGAATCTGTTAACAACTCCCATGTGTTGAATAACTGATAG
AACTGATCGATAGCATTCACAACGCATGTAGCACCGTCCATCAAACTGGA
ATCCTTGACTGAGCAAACTTCTCTGATATGGCCGTCAATCTTCACCTTTT
cacgaccaatcaaatttgaaGTTCCCGTAAATTTGATGTTAAGTATAGTT
ATTTTACGGTCAATTCGCTGATCGTTTGGGTTCTCCTCAAACATGGAGAT
GATTTCTTCTAACATCACATTCATTCGCGCGATCtcattttcaatcaaat
gaAATTTCTCTTCATCTCTAACGTAATTTgaagcttttgaaattttgtcc
cAAGCGTTTATGATTTTAACGAATTGTACCACTGATATGCTCAATGAAGC
TTTAGATAGTTCATGTACCATATCATTTGCTTGCTGCGTTCGATACTTCT
CTAAAATCGTCGTTATCTTATCCTTTTCAGTTTCGTTTTTCACATCATTc
caaaccttttcataaatcgTCTCCGTCCCtccattatttttcttttcttt
catcggtttcattttgtttttGCATTTTTCTTTAATA Run BLAST on NCBI protein sequence of TCONS_00010608-protein >TCONS_00010608-protein ID=TCONS_00010608-protein|Name=TCONS_00010608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
IKEKCKNKMKPMKEKKNNGGTETIYEKVWNDVKNETEKDKITTILEKYRT
QQANDMVHELSKASLSISVVQFVKIINAWDKISKASNYVRDEEKFHLIEN
EIARMNVMLEEIISMFEENPNDQRIDRKITILNIKFTGTSNLIGREKVKI
DGHIREVCSVKDSSLMDGATCVVNAIDQFYQLFNTWELLTDSTKLLGAFS
SIFSFGVCLFHARNYKVSVDTLKELDRDLTKINRLYNEVNLIHSQVIDLL
N Run BLAST on NCBI transcript from alignment at sc0000107:513405..514691 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010608 ID=TCONS_00010608|Name=TCONS_00010608|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at sc0000107:513405..514691 (Clytia hemisphaerica)
TATTAAAGAAAAATGCaaaaacaaaatgaaaccgatgaaagaaaagaaaa
ataatggaGGGACGGAGAcgatttatgaaaaggtttggAATGATGTGAAA
AACGAAACTGAAAAGGATAAGATAACGACGATTTTAGAGAAGTATCGAAC
GCAGCAAGCAAATGATATGGTACATGAACTATCTAAAGCTTCATTGAGCA
TATCAGTGGTACAATTCGTTAAAATCATAAACGCTTgggacaaaatttca
aaagcttcAAATTACGTTAGAGATGAAGAGAAATTtcatttgattgaaaa
tgaGATCGCGCGAATGAATGTGATGTTAGAAGAAATCATCTCCATGTTTG
AGGAGAACCCAAACGATCAGCGAATTGACCGTAAAATAACTATACTTAAC
ATCAAATTTACGGGAACttcaaatttgattggtcgtgAAAAGGTGAAGAT
TGACGGCCATATCAGAGAAGTTTGCTCAGTCAAGGATTCCAGTTTGATGG
ACGGTGCTACATGCGTTGTGAATGCTATCGATCAGTTCTATCAGTTATTC
AACACATGGGAGTTGTTAACAGATTCCACTAAATTACTAGGAGCATTTAG
CTCAATATTCTCTTTTGGTGTGTGCTTATTTCATGCAAGGAACTACAAAG
TATCAGTAGACACTTTAAAGGAGCTGGATCGAGACTTGACCAAAATCAAT
CGTCTATACAATGAAGTAAATTTAATACATTCCCAAGTGATTGACTTGCT
GAATTGAAAAAACCGATGTATCGATCACTTTTGTATCTCAGGCCCAAAAC
AAGCTTATGGAGAtgcaaaaacccaaaaaatgctCATTGGAAATGTAGGA
CAAAAATTCTATGTTGTTTTTACTCggaaacattttattttgagtgcatt
ttcaacaatctagagctcaaattttcaaattcccccctaaacttcagccc
cctccCCAATATTACTTTGAAACGTGAAGAACACAGAAGAAAAGGCTAGA
AAAATTATGCTACTTTTACACAGAATAATCATATCGAAAATTATAAGCTC
AAAGGTTTTACCATACTCTAACAAATTATACCTTCAAGAGCCTATAACTT
TCTCTCGTTAGAATTCTACATAAATGAACTCAGAAGGCTTTAATATAAAA
GGACCTTTGTACTATAAATATAACTTACTATTCTGCttcctttttcatct
tcattttataAGTAGTACTAACAAATTCTAACACACAAACTAAGATAAGA
TTTTTAATTATCAAATTATGAATACTGGCAATacaac Coding sequence (CDS) from alignment at sc0000107:513405..514691 >TCONS_00010608 ID=TCONS_00010608|Name=TCONS_00010608|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0000107:513405..514691 (Clytia hemisphaerica)
ATTAAAGAAAAATGCaaaaacaaaatgaaaccgatgaaagaaaagaaaaa
taatggaGGGACGGAGAcgatttatgaaaaggtttggAATGATGTGAAAA
ACGAAACTGAAAAGGATAAGATAACGACGATTTTAGAGAAGTATCGAACG
CAGCAAGCAAATGATATGGTACATGAACTATCTAAAGCTTCATTGAGCAT
ATCAGTGGTACAATTCGTTAAAATCATAAACGCTTgggacaaaatttcaa
aagcttcAAATTACGTTAGAGATGAAGAGAAATTtcatttgattgaaaat
gaGATCGCGCGAATGAATGTGATGTTAGAAGAAATCATCTCCATGTTTGA
GGAGAACCCAAACGATCAGCGAATTGACCGTAAAATAACTATACTTAACA
TCAAATTTACGGGAACttcaaatttgattggtcgtgAAAAGGTGAAGATT
GACGGCCATATCAGAGAAGTTTGCTCAGTCAAGGATTCCAGTTTGATGGA
CGGTGCTACATGCGTTGTGAATGCTATCGATCAGTTCTATCAGTTATTCA
ACACATGGGAGTTGTTAACAGATTCCACTAAATTACTAGGAGCATTTAGC
TCAATATTCTCTTTTGGTGTGTGCTTATTTCATGCAAGGAACTACAAAGT
ATCAGTAGACACTTTAAAGGAGCTGGATCGAGACTTGACCAAAATCAATC
GTCTATACAATGAAGTAAATTTAATACATTCCCAAGTGATTGACTTGCTG
AATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010608-exon-sc0000107-1491911889:513405..514691 | TCONS_00010608-exon-sc0000107-1491911889:513405..514691 | Clytia hemisphaerica | exon |
| TCONS_00010608-exon-sc0000107-1510915933:513405..514691 | TCONS_00010608-exon-sc0000107-1510915933:513405..514691 | Clytia hemisphaerica | exon |
| TCONS_00010608-exon-sc0000107-1575043694:513405..514691 | TCONS_00010608-exon-sc0000107-1575043694:513405..514691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:513405..514691 . |
Blast
The following BLAST results are available for this feature:
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