TCONS_00010606 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010606
Unique NameTCONS_00010606
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010606 ID=TCONS_00010606|Name=TCONS_00010606|organism=Clytia hemisphaerica|type=transcript|length=426bp
CAAAACCTGAGCTGGTATCGGATAACCTTTTGATGTATACATATTTGATC
ATGACTTATATTGGGCTATCCAATTCCTGTTGTAATTTctttatatatat
tttgaaagatCCAGAATTTAAAACAGCATGTACAAGATTGCTTCGGAGAA
GTGGCGTGGTTCGACCAAGTAATAACACAATCAGACAGAGCAATGCAAAT
AGTGGAAATATTCAATGAGCTATTGAGTCACAACTTTATACAAGTATTCT
TCATGTCAACCACTCACATATTTTGGCCATTCCAGAGAAGAAAGAAaagg
ctagattcaatccgtaaTTGCCAGTGCAGTGCAATTGTCTTAAGGCTTCA
CCTTTTCCCCCTAAGCAAAACGTCCCGAAAACAGTACTGCTTACTgggaa
agtaacatttttatttaataAGTTAT
Run BLAST on NCBI

transcript from alignment at sc0000107:420074..420499

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010606 ID=TCONS_00010606|Name=TCONS_00010606|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0000107:420074..420499 (Clytia hemisphaerica)
ATAACTtattaaataaaaatgttactttcccAGTAAGCAGTACTGTTTTC
GGGACGTTTTGCTTAGGGGGAAAAGGTGAAGCCTTAAGACAATTGCACTG
CACTGGCAAttacggattgaatctagccttTTCTTTCTTCTCTGGAATGG
CCAAAATATGTGAGTGGTTGACATGAAGAATACTTGTATAAAGTTGTGAC
TCAATAGCTCATTGAATATTTCCACTATTTGCATTGCTCTGTCTGATTGT
GTTATTACTTGGTCGAACCACGCCACTTCTCCGAAGCAATCTTGTACATG
CTGTTTTAAATTCTGGatctttcaaaatatatataaagAAATTACAACAG
GAATTGGATAGCCCAATATAAGTCATGATCAAATATGTATACATCAAAAG
GTTATCCGATACCAGCTCAGGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005941XLOC_005941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010606-exon-sc0000107-1491911889:420074..420499TCONS_00010606-exon-sc0000107-1491911889:420074..420499Clytia hemisphaericaexon
TCONS_00010606-exon-sc0000107-1510915933:420074..420499TCONS_00010606-exon-sc0000107-1510915933:420074..420499Clytia hemisphaericaexon
TCONS_00010606-exon-sc0000107-1575043694:420074..420499TCONS_00010606-exon-sc0000107-1575043694:420074..420499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:420074..420499 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.980951	1.11601	2.59159	2.35437	0	0	0	0	0.551086	0.341304	0	0.217769	0.3262	0.790444	0.0928361	0.398509	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top