TCONS_00010605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010605
Unique NameTCONS_00010605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010605 ID=TCONS_00010605|Name=TCONS_00010605|organism=Clytia hemisphaerica|type=transcript|length=445bp
NNGTCCTTATTAGAATTAGGTATTTTTGACGCCAGGTTTTTACCTATCGA
GGAGAAGAAATCGTTGAAAGTTTCAGCTATGGCGGGTTTTTGACTGAGaa
tttgatttttgtattttaattctTGTGGAAATTGTATAGCTGATCTTGAC
CTTCCGATTATGTCTTTGATGATATTCCAGATTTGTTTTGAAttcgcgta
aggcgcgtcatttaacagactcttATTTCTAGGGTAAAACTGGGGTATTT
TCGATTTGGTATGCTGTTTTCACCAATTTGACTCTTAAATTCTTAATAAA
ATTCAGCCATAAAAATAGAGGGGTGATAAAAAACTCAAATACCAAGATTT
TCCAAGATTTTTCTAATGTCATCCACGTTCGaaatgttaaacaaaaatga
CTTGTAAAATTATATCAAATATCTGGTAATGAAAGTCAATGATTA
Run BLAST on NCBI

transcript from alignment at sc0000107:400783..401227

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010605 ID=TCONS_00010605|Name=TCONS_00010605|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000107:400783..401227 (Clytia hemisphaerica)
TAATCATTGACTTTCATTACCAGATATTTGATATAATTTTACAAGtcatt
tttgtttaacatttCGAACGTGGATGACATTAGAAAAATCTTGGAAAATC
TTGGTATTTGAGTTTTTTATCACCCCTCTATTTTTATGGCTGAATTTTAT
TAAGAATTTAAGAGTCAAATTGGTGAAAACAGCATACCAAATCGAAAATA
CCCCAGTTTTACCCTAGAAATaagagtctgttaaatgacgcgccttacgc
gaaTTCAAAACAAATCTGGAATATCATCAAAGACATAATCGGAAGGTCAA
GATCAGCTATACAATTTCCACAagaattaaaatacaaaaatcaaattCTC
AGTCAAAAACCCGCCATAGCTGAAACTTTCAACGATTTCTTCTCCTCGAT
AGGTAAAAACCTGGCGTCAAAAATACCTAATTCTAATAAGGACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005940XLOC_005940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010605-exon-sc0000107-1491911889:400783..401227TCONS_00010605-exon-sc0000107-1491911889:400783..401227Clytia hemisphaericaexon
TCONS_00010605-exon-sc0000107-1510915933:400783..401227TCONS_00010605-exon-sc0000107-1510915933:400783..401227Clytia hemisphaericaexon
TCONS_00010605-exon-sc0000107-1575043694:400783..401227TCONS_00010605-exon-sc0000107-1575043694:400783..401227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:400783..401227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.166525	1.01364	0.707637	1.27118	1.55194	0.506719	0.784566	1.21843	0.200237	0.799835	0.622977	0.256086	0.183213	0.139703	0.115669	0.319607	0.501669	0	0.425371	0	0.313409	0.740427	1.15238	0.412263	0	0.236701	0.169998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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