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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010604 ID=TCONS_00010604|Name=TCONS_00010604|organism=Clytia hemisphaerica|type=transcript|length=1170bp
AACAAATTAGGTCTATGATTTACAAAAACATTGTCGAATTTGAGAATCTT
GTCCCTGAATTCCACTCAACAGGACATCAGGGCGTTGAATaacaatacac
gcttttttttttataagaatacactttataagaatgtccatgatgaaaat
ggccaaaaaattaaaaatttccagtAATCATAAAATCCGGTACGACCGCT
TCTTTGTGTTCGAAGAGATTGCCATGCGTCTTTCGGGTGAAGCAATACAA
ATGTTCCTTTATTAAGAGCGTGCGTGTCCAAACCTTCCGCTTGAAAGTCG
GTGTCATTTTCAACGCGCGCTTTGCCACTGTGGAGGTTCACAAAGAAAAG
ATCATTTTTGAAACAACCAAAGATTTTACGCATGTACAAAAAGCGTTCAT
TTTTGTACAGTTTTTTGTTTTCCATTGCATTGATAATATGTTTATACCAT
TCTTGATACTTTTCATTCGAAATGATATTTGTACCCCATTCTAGCTGTTC
CATCAAAGGTAACTCAAATGGATTAACCACAATTTCATTTGGGTTACCCA
TTTCCTTCGGTCGCTCCTCGActttctttttttgcatttcgATCTCGTTG
CGCAAAGACTCGATGGTCTTTTCCATTTCGTTCTTCATCTTAATCATTTC
GATTTTGTGCATATTTTCTTGCTTAAGAAACTCCTTGTCCTTTTCAAtga
tttccttttctttttccgCCATACCTATCATCATTTCTTTGTCCTTTAAG
GCAATTTCTTCGTCCTTTACCTTTACTAGGTCTCGAAACTCGAGTTCCTT
GGCAGCCATTTGTCTTTCTAAGTTTGAATCGACCAAAAGTTTGTTGGATT
GTAGCTCATGAGCACTCTTTACTTTCATTAACTCATTTTCATGCTTAAGc
gattgattttctttttgcaaCTCTAacatctttgttttgttgtcaTTTTC
TTGTTTCGACATTTTGTTGTCCAATTCCAAAAGTTGAATTTTGTGTTCCA
ACTTCAATGTTTGGATTTGTCTTTCATATTCTCCTTTGAGTTTTGTTACA
TCATGGTTGGCAGCTTGCTGAGGGTGGCTCGTTGCTGTAGCAGCACAATG
AGCCAAATTTCTTTCACCTGAGTGAACGGAACTCATCTTTGAAGCGATAC
AAGTATGAGTGACTCAAATA Run BLAST on NCBI protein sequence of TCONS_00010604-protein >TCONS_00010604-protein ID=TCONS_00010604-protein|Name=TCONS_00010604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MSSVHSGERNLAHCAATATSHPQQAANHDVTKLKGEYERQIQTLKLEHKI
QLLELDNKMSKQENDNKTKMLELQKENQSLKHENELMKVKSAHELQSNKL
LVDSNLERQMAAKELEFRDLVKVKDEEIALKDKEMMIGMAEKEKEIIEKD
KEFLKQENMHKIEMIKMKNEMEKTIESLRNEIEMQKKKVEERPKEMGNPN
EIVVNPFELPLMEQLEWGTNIISNEKYQEWYKHIINAMENKKLYKNERFL
YMRKIFGCFKNDLFFVNLHSGKARVENDTDFQAEGLDTHALNKGTFVLLH
PKDAWQSLRTQRSGRTGFYDYWKFLIFWPFSSWTFL Run BLAST on NCBI transcript from alignment at sc0000107:284298..285467 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010604 ID=TCONS_00010604|Name=TCONS_00010604|organism=Clytia hemisphaerica|type=transcript|length=1170bp|location=Sequence derived from alignment at sc0000107:284298..285467 (Clytia hemisphaerica)
TATTTGAGTCACTCATACTTGTATCGCTTCAAAGATGAGTTCCGTTCACT
CAGGTGAAAGAAATTTGGCTCATTGTGCTGCTACAGCAACGAGCCACCCT
CAGCAAGCTGCCAACCATGATGTAACAAAACTCAAAGGAGAATATGAAAG
ACAAATCCAAACATTGAAGTTGGAACACAAAATTCAACTTTTGGAATTGG
ACAACAAAATGTCGAAACAAGAAAAtgacaacaaaacaaagatgtTAGAG
ttgcaaaaagaaaatcaatcgCTTAAGCATGAAAATGAGTTAATGAAAGT
AAAGAGTGCTCATGAGCTACAATCCAACAAACTTTTGGTCGATTCAAACT
TAGAAAGACAAATGGCTGCCAAGGAACTCGAGTTTCGAGACCTAGTAAAG
GTAAAGGACGAAGAAATTGCCTTAAAGGACAAAGAAATGATGATAGGTAT
GGcggaaaaagaaaaggaaatcaTTGAAAAGGACAAGGAGTTTCTTAAGC
AAGAAAATATGCACAAAATCGAAATGATTAAGATGAAGAACGAAATGGAA
AAGACCATCGAGTCTTTGCGCAACGAGATcgaaatgcaaaaaaagaaagT
CGAGGAGCGACCGAAGGAAATGGGTAACCCAAATGAAATTGTGGTTAATC
CATTTGAGTTACCTTTGATGGAACAGCTAGAATGGGGTACAAATATCATT
TCGAATGAAAAGTATCAAGAATGGTATAAACATATTATCAATGCAATGGA
AAACAAAAAACTGTACAAAAATGAACGCTTTTTGTACATGCGTAAAATCT
TTGGTTGTTTCAAAAATGATCTTTTCTTTGTGAACCTCCACAGTGGCAAA
GCGCGCGTTGAAAATGACACCGACTTTCAAGCGGAAGGTTTGGACACGCA
CGCTCTTAATAAAGGAACATTTGTATTGCTTCACCCGAAAGACGCATGGC
AATCTCTTCGAACACAAAGAAGCGGTCGTACCGGATTTTATGATTactgg
aaatttttaattttttggccattttcatcatggacattcttataaagtgt
attcttataaaaaaaaaagcgtgtattgttATTCAACGCCCTGATGTCCT
GTTGAGTGGAATTCAGGGACAAGATTCTCAAATTCGACAATGTTTTTGTA
AATCATAGACCTAATTTGTT Coding sequence (CDS) from alignment at sc0000107:284298..285467 >TCONS_00010604 ID=TCONS_00010604|Name=TCONS_00010604|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0000107:284298..285467 (Clytia hemisphaerica)
ATGAGTTCCGTTCACTCAGGTGAAAGAAATTTGGCTCATTGTGCTGCTAC
AGCAACGAGCCACCCTCAGCAAGCTGCCAACCATGATGTAACAAAACTCA
AAGGAGAATATGAAAGACAAATCCAAACATTGAAGTTGGAACACAAAATT
CAACTTTTGGAATTGGACAACAAAATGTCGAAACAAGAAAAtgacaacaa
aacaaagatgtTAGAGttgcaaaaagaaaatcaatcgCTTAAGCATGAAA
ATGAGTTAATGAAAGTAAAGAGTGCTCATGAGCTACAATCCAACAAACTT
TTGGTCGATTCAAACTTAGAAAGACAAATGGCTGCCAAGGAACTCGAGTT
TCGAGACCTAGTAAAGGTAAAGGACGAAGAAATTGCCTTAAAGGACAAAG
AAATGATGATAGGTATGGcggaaaaagaaaaggaaatcaTTGAAAAGGAC
AAGGAGTTTCTTAAGCAAGAAAATATGCACAAAATCGAAATGATTAAGAT
GAAGAACGAAATGGAAAAGACCATCGAGTCTTTGCGCAACGAGATcgaaa
tgcaaaaaaagaaagTCGAGGAGCGACCGAAGGAAATGGGTAACCCAAAT
GAAATTGTGGTTAATCCATTTGAGTTACCTTTGATGGAACAGCTAGAATG
GGGTACAAATATCATTTCGAATGAAAAGTATCAAGAATGGTATAAACATA
TTATCAATGCAATGGAAAACAAAAAACTGTACAAAAATGAACGCTTTTTG
TACATGCGTAAAATCTTTGGTTGTTTCAAAAATGATCTTTTCTTTGTGAA
CCTCCACAGTGGCAAAGCGCGCGTTGAAAATGACACCGACTTTCAAGCGG
AAGGTTTGGACACGCACGCTCTTAATAAAGGAACATTTGTATTGCTTCAC
CCGAAAGACGCATGGCAATCTCTTCGAACACAAAGAAGCGGTCGTACCGG
ATTTTATGATTactggaaatttttaattttttggccattttcatcatgga
cattcttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010604-exon-sc0000107-1491911889:284298..285467 | TCONS_00010604-exon-sc0000107-1491911889:284298..285467 | Clytia hemisphaerica | exon |
| TCONS_00010604-exon-sc0000107-1510915933:284298..285467 | TCONS_00010604-exon-sc0000107-1510915933:284298..285467 | Clytia hemisphaerica | exon |
| TCONS_00010604-exon-sc0000107-1575043694:284298..285467 | TCONS_00010604-exon-sc0000107-1575043694:284298..285467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:284298..285467 . |
Blast
The following BLAST results are available for this feature:
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