TCONS_00010599 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010599
Unique NameTCONS_00010599
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1738

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010599 ID=TCONS_00010599|Name=TCONS_00010599|organism=Clytia hemisphaerica|type=transcript|length=1738bp
TAGTGCAATGAATTTATGAAATTCCTGTTCGCCCCAGGAAGCAAAATGGA
ATAGTCTTAAAGTTCAAACTCTAAACATAAATCGTtcttaaatttctatt
ttttttttcagatcaaatcaataacaaaaataaagaataaaaaaagtaaa
acgaaAATATTCACTCAAACCAAGCCCATGTATCAAAGATGAACAACAAT
AGTAGCAGGCGTcgtaaaaatccaaaatcaccTCAAAGACACGTCACCTT
TGAAGATGGAGTCATTGAAAAAGACAAATCCACCTTCACGCCTCGTCAAT
TCTTTACACAACATTCACGAAAATTATTAGTTTTAATCTTATTCACTGGA
ATTGTATATCTTTTATTTGTACCGCCACCCAAGTTTTCACAAGAGGTGCA
ATTCTGGCATGATAGTAGTTATTTGTACAAATTCGGACAGTTCGATATTC
ATTTTCATGATATCCCGAGAATCAAGAAACCGGTTTCTTTAAATCCCGTT
TTATTGATTTTACACGGATTTCCAACAAGCAGTTACGATTGGCGTGACTT
GGTACCTAAATTTCACAAGAAATTTGGGCGAGTTATTATCCCCGATTTTC
TTGGATTTGGTTTCAGTGATAAACCGAAAAAGCACGTTTATTCTATAATG
GAACAAGCTGAAATGGTAGAAAGCTTACTTAAGTATTTAAACATCACTGA
AGTTCATATGCTATCGCATGATTATGGTGATACAGTACTTCAAGAACTTT
TAGCCCGAACCAATGATCCAAGTTACAATCTGAAATTCAAGATTCAAAGT
ATTTGCCTGACAAACGGTGGCATAATACCTTCCCAACATAAACCATTATT
AATACAAAGCTTATTGGTGAAACCTGTTCTTCGTTCCATTTTACCGTACC
TGACAACCCGCTTTATATTCGCTTCACGTTTTAGTTCAGTATTTGCACCA
GATAGAACTCCCAGCAGCCGACTACTGGATGACTTCTACGCTATCATTTC
GTACAAAGGTGGGAATCTCGTTTCGCCTGCTATTTTACGGTATATTGCCG
AGAGACATGACCACGAAGAACGATGGGTTGGAGCCTTACAGGAAACAAAA
ATCCCGATTCATTTGATATACGGACCTTTAGATCCGATTAATACTCCGGA
CGGATTTCTAAAAACTTACGAAGAGTTAGTTCCGCATTCTACGGTATCCG
TATTAGAGGGTATTGGACATTATCCTCAACTTGAGGCACCAACTGGTTTT
GTTAAAGCTTAcgagaaatttttgaaacaaattaaTATCTAATGACAATA
TTTTACACGTATAATGTATTAATGTAAGAATTTTGAATTTGTAATTTTCG
Agcttgatttttgaattaataatttgaaattttacagaattttttggacc
atttgtTTTGTAACTATCAATAAGCTACTTAATATTTATGATTTTctgtt
tctttttatattttatagtcTTTATTTAGTCTGTGGGGATGATAATTTTA
TAGGGttgaaattcttaatttttaattttcaatatttaatgCAATTTATC
TTCTAatattttcttcgaattttctgaatttttttatagCTAGTGAAATT
TTTAAGTACGCTTCAAGGTAATCAATATACATCTTCAAGATAATACTAAA
TTATCCATTAAATAGTTTACCTTTGACACTGTCACATTATCCTcttttca
taacttttgaactactATAGGTGTACTTTCAGTTGTAA
Run BLAST on NCBI

protein sequence of TCONS_00010599-protein

>TCONS_00010599-protein ID=TCONS_00010599-protein|Name=TCONS_00010599-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MNNNSSRRRKNPKSPQRHVTFEDGVIEKDKSTFTPRQFFTQHSRKLLVLI
LFTGIVYLLFVPPPKFSQEVQFWHDSSYLYKFGQFDIHFHDIPRIKKPVS
LNPVLLILHGFPTSSYDWRDLVPKFHKKFGRVIIPDFLGFGFSDKPKKHV
YSIMEQAEMVESLLKYLNITEVHMLSHDYGDTVLQELLARTNDPSYNLKF
KIQSICLTNGGIIPSQHKPLLIQSLLVKPVLRSILPYLTTRFIFASRFSS
VFAPDRTPSSRLLDDFYAIISYKGGNLVSPAILRYIAERHDHEERWVGAL
QETKIPIHLIYGPLDPINTPDGFLKTYEELVPHSTVSVLEGIGHYPQLEA
PTGFVKAYEKFLKQINI
Run BLAST on NCBI

transcript from alignment at sc0000107:131731..133468

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010599 ID=TCONS_00010599|Name=TCONS_00010599|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at sc0000107:131731..133468 (Clytia hemisphaerica)
TTACAACTGAAAGTACACCTATagtagttcaaaagttatgaaaagAGGAT
AATGTGACAGTGTCAAAGGTAAACTATTTAATGGATAATTTAGTATTATC
TTGAAGATGTATATTGATTACCTTGAAGCGTACTTAAAAATTTCACTAGc
tataaaaaaattcagaaaattcgaagaaaatatTAGAAGATAAATTGcat
taaatattgaaaattaaaaattaagaatttcaaCCCTATAAAATTATCAT
CCCCACAGACTAAATAAAgactataaaatataaaaagaaacagAAAATCA
TAAATATTAAGTAGCTTATTGATAGTTACAAAacaaatggtccaaaaaat
tctgtaaaatttcaaattattaattcaaaaatcaagcTCGAAAATTACAA
ATTCAAAATTCTTACATTAATACATTATACGTGTAAAATATTGTCATTAG
ATAttaatttgtttcaaaaatttctcgTAAGCTTTAACAAAACCAGTTGG
TGCCTCAAGTTGAGGATAATGTCCAATACCCTCTAATACGGATACCGTAG
AATGCGGAACTAACTCTTCGTAAGTTTTTAGAAATCCGTCCGGAGTATTA
ATCGGATCTAAAGGTCCGTATATCAAATGAATCGGGATTTTTGTTTCCTG
TAAGGCTCCAACCCATCGTTCTTCGTGGTCATGTCTCTCGGCAATATACC
GTAAAATAGCAGGCGAAACGAGATTCCCACCTTTGTACGAAATGATAGCG
TAGAAGTCATCCAGTAGTCGGCTGCTGGGAGTTCTATCTGGTGCAAATAC
TGAACTAAAACGTGAAGCGAATATAAAGCGGGTTGTCAGGTACGGTAAAA
TGGAACGAAGAACAGGTTTCACCAATAAGCTTTGTATTAATAATGGTTTA
TGTTGGGAAGGTATTATGCCACCGTTTGTCAGGCAAATACTTTGAATCTT
GAATTTCAGATTGTAACTTGGATCATTGGTTCGGGCTAAAAGTTCTTGAA
GTACTGTATCACCATAATCATGCGATAGCATATGAACTTCAGTGATGTTT
AAATACTTAAGTAAGCTTTCTACCATTTCAGCTTGTTCCATTATAGAATA
AACGTGCTTTTTCGGTTTATCACTGAAACCAAATCCAAGAAAATCGGGGA
TAATAACTCGCCCAAATTTCTTGTGAAATTTAGGTACCAAGTCACGCCAA
TCGTAACTGCTTGTTGGAAATCCGTGTAAAATCAATAAAACGGGATTTAA
AGAAACCGGTTTCTTGATTCTCGGGATATCATGAAAATGAATATCGAACT
GTCCGAATTTGTACAAATAACTACTATCATGCCAGAATTGCACCTCTTGT
GAAAACTTGGGTGGCGGTACAAATAAAAGATATACAATTCCAGTGAATAA
GATTAAAACTAATAATTTTCGTGAATGTTGTGTAAAGAATTGACGAGGCG
TGAAGGTGGATTTGTCTTTTTCAATGACTCCATCTTCAAAGGTGACGTGT
CTTTGAggtgattttggatttttacgACGCCTGCTACTATTGTTGTTCAT
CTTTGATACATGGGCTTGGTTTGAGTGAATATTttcgttttacttttttt
attctttatttttgttattgatttgatctgaaaaaaaaaatagaaattta
agaACGATTTATGTTTAGAGTTTGAACTTTAAGACTATTCCATTTTGCTT
CCTGGGGCGAACAGGAATTTCATAAATTCATTGCACTA

Coding sequence (CDS) from alignment at sc0000107:131731..133468

>TCONS_00010599 ID=TCONS_00010599|Name=TCONS_00010599|organism=Clytia hemisphaerica|type=CDS|length=1104bp|location=Sequence derived from alignment at sc0000107:131731..133468 (Clytia hemisphaerica)
TTAGATAttaatttgtttcaaaaatttctcgTAAGCTTTAACAAAACCAG
TTGGTGCCTCAAGTTGAGGATAATGTCCAATACCCTCTAATACGGATACC
GTAGAATGCGGAACTAACTCTTCGTAAGTTTTTAGAAATCCGTCCGGAGT
ATTAATCGGATCTAAAGGTCCGTATATCAAATGAATCGGGATTTTTGTTT
CCTGTAAGGCTCCAACCCATCGTTCTTCGTGGTCATGTCTCTCGGCAATA
TACCGTAAAATAGCAGGCGAAACGAGATTCCCACCTTTGTACGAAATGAT
AGCGTAGAAGTCATCCAGTAGTCGGCTGCTGGGAGTTCTATCTGGTGCAA
ATACTGAACTAAAACGTGAAGCGAATATAAAGCGGGTTGTCAGGTACGGT
AAAATGGAACGAAGAACAGGTTTCACCAATAAGCTTTGTATTAATAATGG
TTTATGTTGGGAAGGTATTATGCCACCGTTTGTCAGGCAAATACTTTGAA
TCTTGAATTTCAGATTGTAACTTGGATCATTGGTTCGGGCTAAAAGTTCT
TGAAGTACTGTATCACCATAATCATGCGATAGCATATGAACTTCAGTGAT
GTTTAAATACTTAAGTAAGCTTTCTACCATTTCAGCTTGTTCCATTATAG
AATAAACGTGCTTTTTCGGTTTATCACTGAAACCAAATCCAAGAAAATCG
GGGATAATAACTCGCCCAAATTTCTTGTGAAATTTAGGTACCAAGTCACG
CCAATCGTAACTGCTTGTTGGAAATCCGTGTAAAATCAATAAAACGGGAT
TTAAAGAAACCGGTTTCTTGATTCTCGGGATATCATGAAAATGAATATCG
AACTGTCCGAATTTGTACAAATAACTACTATCATGCCAGAATTGCACCTC
TTGTGAAAACTTGGGTGGCGGTACAAATAAAAGATATACAATTCCAGTGA
ATAAGATTAAAACTAATAATTTTCGTGAATGTTGTGTAAAGAATTGACGA
GGCGTGAAGGTGGATTTGTCTTTTTCAATGACTCCATCTTCAAAGGTGAC
GTGTCTTTGAggtgattttggatttttacgACGCCTGCTACTATTGTTGT
TCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005934XLOC_005934Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010599-proteinTCONS_00010599-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010599-exon-sc0000107-1491911889:131731..133468TCONS_00010599-exon-sc0000107-1491911889:131731..133468Clytia hemisphaericaexon
TCONS_00010599-exon-sc0000107-1510915933:131731..133468TCONS_00010599-exon-sc0000107-1510915933:131731..133468Clytia hemisphaericaexon
TCONS_00010599-exon-sc0000107-1575043694:131731..133468TCONS_00010599-exon-sc0000107-1575043694:131731..133468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:131731..133468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.5552	11.2003	2.73228	2.03053	18.7745	15.4788	25.1181	28.8774	17.3239	19.5451	10.6961	8.40655	5.84863	4.47126	6.91717	8.25741	7.29838	6.82003	2.81187	4.25877	2.82671	3.02016	24.343	20.0512	6.77614	6.38105	5.31331	4.24439	14.4479	15.6122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000639Epox_hydrolase-like
IPR029058AB_hydrolase
IPR000073AB_hydrolase_1
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00010599 vs. Swiss-Prot (Human)
Match: MEST (Mesoderm-specific transcript homolog protein OS=Homo sapiens GN=MEST PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 9.580e-79
Identity = 141/310 (45.48%), Postives = 187/310 (60.32%), Query Frame = 3 
Query:  363 LFVPPPKFSQEVQFWHDSSYLYKFGQFDIHFHDIPRIKKPVSLNPVLLILHGFPTSSYDWRDLVPKFHKKFGRVIIPDFLGFGFSDKPKKHVYSIMEQAEMVESLLKYLNITE--VHMLSHDYGDTVLQELLARTNDPSYNLKFKIQSICLTNGGIIPSQHKPLLIQSLLVKP-VLRSILPYLTTRFIFASRFSSVFAPDRTPSSRLLDDFYAIISYKGGNLVSPAILRYIAERHDHEERWVGALQETKIPIHLIYGPLDPINTPDGFLKTYEELVPHSTVSVLEG-IGHYPQLEAPTGFVKAYEKFLKQ 1280
            L +PPP+ S  +  W  S   + +    I + D   +   V    ++++LHGFPTSSYDW  +      +F RVI  DFLGFGFSDKP+ H YSI EQA +VE+LL++L +    +++LSHDYGD V QELL R    + + +  I+S+CL+NGGI P  H+PLL+Q LL    VL  IL  L   F+F+   + VF P   PS   L D +A I    GNLV  ++L+YI +R     RWVGAL    IPIH IYGPLDP+N    FL+ Y + +P STVS+L+  I HYPQLE P GF+ AY  F+  
Sbjct:   29 LHIPPPQLSPALHSWKSSGKFFTYKGLRIFYQDSVGV---VGSPEIVVLLHGFPTSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHHYSIFEQASIVEALLRHLGLQNRRINLLSHDYGDIVAQELLYRYKQ-NRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNFFVFSRGLTPVFGPYTRPSESELWDMWAGIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVTIPIHFIYGPLDPVNPYPEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFINS 334
The following BLAST results are available for this feature:
BLAST of TCONS_00010599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEST9.580e-7945.48Mesoderm-specific transcript homolog protein OS=Ho... [more]
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