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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010596 ID=TCONS_00010596|Name=TCONS_00010596|organism=Clytia hemisphaerica|type=transcript|length=1252bp
aaacttgaTGAATTCAAATACAGTATCCTATCAACGATAAAAGATGAATG
CCAGCAAGCTTTGAAGTCCTATTCAGAAGTCGCCAAATCTGGTCTTCCTC
AGCAGACGAGTGATACAAGCGGAATCAAGATTGCGATAAAACAAGCAAGA
GACGAAGAGATAGCCCACGAGATGGAGAAGAGAAGAAGATGTACAAACGT
CATTGTGCATGGAATGAAAGAACAAGAGCAGGTATGTGATATTAGTGACA
CACCCAATCGTACTAGGGACTGTGAATGGGCTGAAAAATTAGTAAAAGAT
ATTCATGTCACCTCTAAGATaaagaaagtttttagaatAGGGAAGAAGCC
CAACCGTCCAATATGAGGAAGATAAAGATAAGCTAATGGGAAATCTCCCG
TCACTAAAGGGAAATGAATGGTATAAGGGCATAAGTATCACGGAAGACCT
CTGTATATCTGACCGCGAATGCTATAAAGAACTGTCCCAGCAGGCTAAAG
ACCGAAATCGCAATCTCACCACGAATGAGTTCATTTGGAGAGTCCGAGGA
TCCTCAAAAAACGGATTTGACCTAAAGAAGGTTTACAAAAAAACGACACT
AAACAACAGCCGAACCAACGTAACAGACAACAACCCAACCAGCCAATAAG
gccaaacaaaaatgataacgAAGATAGCTCAAATGAAAACCCAACAAACC
AAAACATGAACAAACCTACAGAAACAACCCCAACAATTAGAGAACTTAGG
ACAATTTACACAAACGCTGACCAAATgacaagtaaaaagaaaaatgaact
gtTAAAAACGGTAATCGCAGAACAACCACATATAATTGCCATCACTGAGG
TAAACACCAAACGAGTCTCCGAGAGAAAAGATCAAGACTACTCTTTCGAA
AATTACTCTACACCATATAAAACAAatattggaatgaaaaaaagaagagg
aaTTATAATACTAGTTCACAACTCCATTGAACAACTCATCCTAcaaatag
aaacaaaaattcGATTTGAAGAGGTCTGTCTGATAGAAATAGAAATGCAG
AACAAAGACACGATGTTATTTGGCTGCTTTTACAGAAGCCCAACCAAAAC
CGAAACAAACGACTAcgatgaaaataacaacaacatgAACAAGCTCATAA
GAGATCTCTGCTTAAACCCAAAATACACTCACCTATGTCTTGTAGGAGAC
TTTAACTACGGAAAGATCGATTGGAAACATTGGTCTTCCCCATGCGAAGA
AG Run BLAST on NCBI protein sequence of TCONS_00010596-protein >TCONS_00010596-protein ID=TCONS_00010596-protein|Name=TCONS_00010596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MNKPTETTPTIRELRTIYTNADQMTSKKKNELLKTVIAEQPHIIAITEVN
TKRVSERKDQDYSFENYSTPYKTNIGMKKRRGIIILVHNSIEQLILQIET
KIRFEEVCLIEIEMQNKDTMLFGCFYRSPTKTETNDYDENNNNMNKLIRD
LCLNPKYTHLCLVGDFNYGKIDWKHWSSPCEE Run BLAST on NCBI transcript from alignment at sc0000107:24866..26117 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010596 ID=TCONS_00010596|Name=TCONS_00010596|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at sc0000107:24866..26117 (Clytia hemisphaerica)
CTTCTTCGCATGGGGAAGACCAATGTTTCCAATCGATCTTTCCGTAGTTA
AAGTCTCCTACAAGACATAGGTGAGTGTATTTTGGGTTTAAGCAGAGATC
TCTTATGAGCTTGTTcatgttgttgttattttcatcgTAGTCGTTTGTTT
CGGTTTTGGTTGGGCTTCTGTAAAAGCAGCCAAATAACATCGTGTCTTTG
TTCTGCATTTCTATTTCTATCAGACAGACCTCTTCAAATCgaatttttgt
ttctatttgTAGGATGAGTTGTTCAATGGAGTTGTGAACTAGTATTATAA
ttcctcttctttttttcattccaatatTTGTTTTATATGGTGTAGAGTAA
TTTTCGAAAGAGTAGTCTTGATCTTTTCTCTCGGAGACTCGTTTGGTGTT
TACCTCAGTGATGGCAATTATATGTGGTTGTTCTGCGATTACCGTTTTTA
acagttcatttttctttttacttgtcATTTGGTCAGCGTTTGTGTAAATT
GTCCTAAGTTCTCTAATTGTTGGGGTTGTTTCTGTAGGTTTGTTCATGTT
TTGGTTTGTTGGGTTTTCATTTGAGCTATCTTcgttatcatttttgtttg
gcCTTATTGGCTGGTTGGGTTGTTGTCTGTTACGTTGGTTCGGCTGTTGT
TTAGTGTCGTTTTTTTGTAAACCTTCTTTAGGTCAAATCCGTTTTTTGAG
GATCCTCGGACTCTCCAAATGAACTCATTCGTGGTGAGATTGCGATTTCG
GTCTTTAGCCTGCTGGGACAGTTCTTTATAGCATTCGCGGTCAGATATAC
AGAGGTCTTCCGTGATACTTATGCCCTTATACCATTCATTTCCCTTTAGT
GACGGGAGATTTCCCATTAGCTTATCTTTATCTTCCTCATATTGGACGGT
TGGGCTTCTTCCCTattctaaaaactttctttATCTTAGAGGTGACATGA
ATATCTTTTACTAATTTTTCAGCCCATTCACAGTCCCTAGTACGATTGGG
TGTGTCACTAATATCACATACCTGCTCTTGTTCTTTCATTCCATGCACAA
TGACGTTTGTACATCTTCTTCTCTTCTCCATCTCGTGGGCTATCTCTTCG
TCTCTTGCTTGTTTTATCGCAATCTTGATTCCGCTTGTATCACTCGTCTG
CTGAGGAAGACCAGATTTGGCGACTTCTGAATAGGACTTCAAAGCTTGCT
GGCATTCATCTTTTATCGTTGATAGGATACTGTATTTGAATTCAtcaagt
tt Coding sequence (CDS) from alignment at sc0000107:24866..26117 >TCONS_00010596 ID=TCONS_00010596|Name=TCONS_00010596|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000107:24866..26117 (Clytia hemisphaerica)
TTCTTCGCATGGGGAAGACCAATGTTTCCAATCGATCTTTCCGTAGTTAA
AGTCTCCTACAAGACATAGGTGAGTGTATTTTGGGTTTAAGCAGAGATCT
CTTATGAGCTTGTTcatgttgttgttattttcatcgTAGTCGTTTGTTTC
GGTTTTGGTTGGGCTTCTGTAAAAGCAGCCAAATAACATCGTGTCTTTGT
TCTGCATTTCTATTTCTATCAGACAGACCTCTTCAAATCgaatttttgtt
tctatttgTAGGATGAGTTGTTCAATGGAGTTGTGAACTAGTATTATAAt
tcctcttctttttttcattccaatatTTGTTTTATATGGTGTAGAGTAAT
TTTCGAAAGAGTAGTCTTGATCTTTTCTCTCGGAGACTCGTTTGGTGTTT
ACCTCAGTGATGGCAATTATATGTGGTTGTTCTGCGATTACCGTTTTTAa
cagttcatttttctttttacttgtcATTTGGTCAGCGTTTGTGTAAATTG
TCCTAAGTTCTCTAATTGTTGGGGTTGTTTCTGTAGGTTTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010596-exon-sc0000107-1491911889:24866..26117 | TCONS_00010596-exon-sc0000107-1491911889:24866..26117 | Clytia hemisphaerica | exon |
| TCONS_00010596-exon-sc0000107-1510915933:24866..26117 | TCONS_00010596-exon-sc0000107-1510915933:24866..26117 | Clytia hemisphaerica | exon |
| TCONS_00010596-exon-sc0000107-1575043694:24866..26117 | TCONS_00010596-exon-sc0000107-1575043694:24866..26117 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:24866..26117 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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