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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010581 ID=TCONS_00010581|Name=TCONS_00010581|organism=Clytia hemisphaerica|type=transcript|length=1687bp
gttttgaaaaaagatgaTTTTATAAAAGCCCGTTATCATTTGCTACTGGC
GATGCTTCAAGTTGAACAGGGTTATACTGCGAATTCCTTTTCCAGGGGAA
ACAGTGATACACTGGACGACAATCGAACGACGCCCGTCAAAGTGACAACA
TCCGCTCATTCATCGCCCCAACAGCACGCTATCACGCCCACGACCAGCAA
CAATAATTCAGCGGATAATTCTTTCGATACGGGTTTTGAACCAGCTCAAT
ATGCCGACATCGATGCGACGAACGAGAACATATTACTAGCCTCGTCTCGT
AGAACGCCAGATTTAGACAGTCAAAAACCAATGGCTGTGACACCTGAACT
AACACATTTGCAAAATTACATGCATAGTAAAGACTCTAGTACAGATAGTG
CTGTTTACGTTACGCCAAAGGATCACGTTAACCATCATGTGACTGCATAC
AGTGGCGAAAGTACGGGTAGCTTGAACGACGATTTCGAAAATCACAACTC
TTTGCAATTAGATTCAAATCAGCATACAGAAGAGAACAATTTTAACACTT
TGATTTCTCATGATGAAGCATTACACGAAAATGAAGTCGAAAAGGAAAAA
GAGAAGCCGCAACGTACAATAAATCGTAAAAAGAAAGACTCGGGACCGAT
CAGTAGAAATAGTTCTTGCGTAAGCACAGACTCAACTACAAGCACGGCTA
CCGTAGACTCCGGAATTGTTGTAAGGCTCGATTCCAGTCCCCGAGACAGC
CCGATTTCGAGTAGTCAGTATTATAGTAATAAAGACTTATCCACGTCACG
TGAAACTTTAGATGATGACGTCAGAGCTTTGGAAGAAAGCGAGAAAAATA
ATGCAACTGCTCATTGCTATGGCGACGATGATTCCATTTTACCCAATGAC
GGTCTACAAGAAGAAAGTCTCCCTTCAACACCGACCAGCATTGATGATCT
CGACAACGAAAAGAGCAAATTGATTGACAGTATGCGAGAAAAGATCAACG
AGTTACGCGACCAGGAGCAAGAAATTGCTGAAGAAATCAAAATGAACGAG
GAACTCGGCAAAAAGGTACTCGGCATGGTCGAATCTAAAGCAACTCAAAG
CGAATTTTCAAAATACGAGTTGTTTATTGGCGAGTTGAACAAGATTGTAG
CTTTATTGTTATCTTTAACTCAACGTTTGCATCGATACGAGATGATGTTA
CAAGATTTGGACATGACTAATGAAAGTGATAAACTGAAAAAGGATGGTCT
CATCTCGAAGATCGACAAATTAAAAAGCCAACACGAAGAAGCGTGTTATT
TACGCGATGTAAACGACAAACGTGGCGATAACGTGTCTAATTTCCTCGCT
AAATATTGTGACGAGGAAgaattttccgattttcaatACTACGTTGACAT
GAAATCACAACTCGCTCTCATGCAATCTGAAATCCGTGAGAAAGTCAAAC
TGGGCGAAGAACGTTTGAAAGCTCTTGAACAAACCGGATCGGATTGGGGT
ATCGGTTGATATTGGATTACTTTTCATCGGAATTGGTtttatttgtgaaa
aaaaaattgaaaatgtgagAGTAGTGTatgtgttttttggacctaccccg
gtggggtagaggtcctataaattaaccgatgtccgtccgtccgtccgttc
gttcgtccgtccgtctgttaccagcttttctcaggNN Run BLAST on NCBI transcript from alignment at sc0000107:480946..486491- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010581 ID=TCONS_00010581|Name=TCONS_00010581|organism=Clytia hemisphaerica|type=transcript|length=5546bp|location=Sequence derived from alignment at sc0000107:480946..486491- (Clytia hemisphaerica)
GTTTTGAAAAAAGATGATTTTATAAAAGCCCGTTATCATTTGCTACTGGC
GATGCTTCAAGTTGAACAGGGTTATACTGCGAATTCCTTTTCCAGGTATA
TTTTGAGCTTGGGGGTTTGCTTTTTTGTTCAACTACGTTTTTTTTGAAAA
AAAAGGTGATATGCTCTGTTTTGGTAGGGCTGCTTGATTTATAGCCTGAC
TTGCATTTTTGACATTGTGGTGAAACCTAGACTTTGTCTACGGTAGATTG
CTGGAAGATGATTGTTTATTTTACATGGAAGTTCGTGCAGAATAATAAGC
AAGCTGTCTTCGTGCGTGTTTCAACTGAAGAATGATTTCCGCCTGAAGAA
TTGATTGTCCAATTGTTTTATTTAATTTGCTATGGTGATTATCGTACACA
ATATCTTAACATAGATCTCTTGTTTCCTTATCCCTTTTTAATTTCTTATT
CTCTTTGTTAAAATTTTTGATGCTAAATATGGAAAGCAAAATGACCTTAA
TTTGCGTTTTGATTTACGTATAATGATATTATCCCGAACCTTTTCCGTTG
CCAAGGAATTATTGGTTTTGTACGTTGCACAGATTTTGTTTTTCGCTGGA
TGATTTTCATAGAGTATATTCTTTTGTGAGCAATCTCAAAATTGTGATCA
AAGTTCGTGCTCTCTTTTCCAATGGTCTTGACTTAGTTGGCTGGAATTTA
AACTCAACAAGGACCTTCGCAACGTCTAAAGTAACCCCCCTCACCAATAC
CAAAGGATAATTGATTACGTACGCTGTACAGATTTTGTTTTCGATTTTTG
GATTGATTTTCTGCCAGATTCACCCATCTCTAAATAACAATCAAATGACT
GGCAGTTATTTTAGTGGATACCTTTGTCACACATAAAGTTCTAAATCAGG
ACCTTCTCTCTCAAAGATCTAACTCGAATCTTTATCTCAAAATTCTTGCT
AAATTGATGTACTCGGTGTATGCCCGGGTAGAGCTGACTCTTCCTTGGAT
CGATTGGCCTATCTTACAGTAGACAGTTGAATTGCAGGTTTTATTGATTG
TTTTGGAATTTATTTACCAATTTATTATGATCGATGCATGGTAAATCAAT
CTTGCTATTTATTGTTTTGACTGTATCACTTTCTTAGTAAATTAACTTAA
ATTTTCTTAAGTTGAGTTTGGAATGTTAATCTCTTAGTGGGCTCACGTCG
GGTGGTAGAAAATATCTCGAAAATCATATTAAAAAGTCAAAATTTGATGT
TTGTTTTTCGGAAACTATTTTGGATTTGCTCTGGAACTGTTTGTTGTTAA
ATATTGTGATTGGTCATTTTCAATTTCCCAGGGAGTTTAACCAAAGCATT
GCGAAAACAATGAATCTTTAAAACTCACCAACATTGATGTAGCCCTATCT
GATTCTTTAATGTTAACAGAGATCACTACCTTGAGAAAGTTTTTTTATCA
TTTCATCATGAATGACAATTTCATCAATAGTTTTAAACATTAATCGTGAC
AGCCTCGGGTCTTTCGTGGGTGTCTCTTTATAGCTAAAGCGTTACATCAT
AGACGAAGTTATAAACGCAAATCTTTAACATTAACACTGTTTTCTATTTC
TTTTAAACAGGGGAAACAGTGATACACTGGACGACAATCGAACGACGCCC
GTCAAAGTGACAACATCCGCTCATTCATCGCCCCAACAGCACGCTATCAC
GCCCACGACCAGCAACAATAATTCAGCGGATAATTCTTTCGATACGGGTT
TTGAACCAGCTCAATATGCCGACATCGATGCGACGAACGAGAACATATTA
CTAGCCTCGTCTCGTAGAACGCCAGATTTAGACAGTCAAAAACCAATGGC
TGTGACACCTGAACTAACACATTTGCAAAATTACATGCATAGTAAAGACT
CTAGTACAGATAGTGCTGTTTACGTTACGCCAAAGGATCACGTTAACCAT
CATGTGACTGCATACAGTGGCGAAAGTACGGGTAGCTTGAACGACGATTT
CGAAAATCACAACTCTTTGCAATTAGATTCAAATCAGCATACAGAAGAGA
ACAATTTTAACACTTTGATTTCTCATGATGAAGCATTACACGAAAATGAA
GTCGAAAAGGAAAAAGAGAAGCCGCAACGTACAATAAATCGTAAAAAGAA
AGACTCGGGACCGATCAGTAGAAATAGTTCTTGCGTAAGCACAGACTCAA
CTACAAGCACGGCTACCGTAGACTCCGGAATTGTTGTAAGGCTCGATTCC
AGTCCCCGAGACAGCCCGATTTCGAGTAGTCAGTATTATAGTAATAAAGA
CTTATCCACGTCACGTGAAACTTTAGATGATGACGTCAGAGCTTTGGAAG
AAAGCGAGAAAAATAATGCAACTGCTCATTGCTATGGCGACGATGATTCC
ATTTTACCCAATGACGGTCTACAAGAAGAAAGTCTCCCTTCAACACCGAC
CAGCATTGATGATCTCGACAACGAAAAGGTAGTTATCTTCTTATGAATTT
CCTCTTATGTTTAAGGCTCTTCCCTCTTAGACGGATTTCCGTCTCAGCCA
TTTTAAAGATGGCATTCCCGTCTCTAAATTCAACAAGCTCTGAGGCGACT
TTGTTATCTGTTGTGAATTCCTATTCTGTTAACTCTCTCAAATCGATCTT
CAAAAGACAAAGAACTTTCTTCGGATTATAGAAAGATTTTTATTTCGAAG
AGTATTTTGTATGACTTTTCATGGCAATCTTTTACTTCGAATTACAGAAA
GATTCGAATAAAAGAGGTTCGAATTAGAGAGAGAGTTGACTGTATTTCAT
CATTCCTGTCAACCTGGAAAGAAAGACGTCAAATTTTAATCTTTAATGAT
AAAATCATTGTATTCATGATATGCACCATTGCAATGTCTTCTGACATTAC
ATCACGGACCCAATAGCTGATCGGTTGTAAGTGACGTAAAATCACTTAAT
ACGTCACTTTCAATAAATCAACTGTTTGGTCCGTGTAAGACATTGCGATG
GTGCATATCATCATGAATTGACGAGACATTTGACATTTCAACGTCAATCC
TATCTGGTAAACACAACTCAGTCTCCTCAAGCTTTACTGGTTGATTAGTG
TATTTTGTTTTTTTTCTTCAAAAATGTTTAGTTTGTCTCTTGGCGCGTCT
CGTTTGCGGTTTCACTTGTTGGCGTTTGGTGGTTAGCGTTAATTACGTTT
GTGCTATTACGACATAGGATGGTCGTTGGCATCAGATTATTATACTCTAA
TTGAGCAATTTTAGTTCCGTTTCGTTCTACGTAAGAGTTTGAAACAGGGT
TTTCAGAATCGCATACACGTCACTGAGAATAAGAATAAGGCCTTTGCGTT
CTCAACAATCAATTAAATACCAAATAATTATATCTTTTGGTATTATGATC
AGATTTTGTGGTTACTCAATTTTGCAATATTTCAGATGGAGGTTTCATTG
GCTTAGTTACAGGAAAATAAATTTCAGGATTTCAAGTAAAAGATGTTTTT
TATGTCATGTTCTGGAAAGCGAACTGATTGGGCTCAATTAAATTTCTCAA
ATTTTTAACTTTTTTAAATTTTAGCAGACATTCCGGGGGTATTACGGATG
AATGATATGTTTTTAATTTCGAAAATTCTACGAGTTTAAAACCTTTGACA
AATGAACATCATGGCATGAGATATGTATTTTTCGTCAACAAGTTTCGCAG
TTCGAAACCTTACTCACTCTCTCATGAGCGTCATAAGCCAATGACCTCAC
AACAAACTACACACGAGCCTAGCGCGAAAAAAATGATATAGATTTTCGTA
TGTAGTGTCATAATGCTGGCATGAGGTACACAGTCGTTTACAAAGCCAAT
TGAAACCTATATCTTTTTTTTAAGACATCATGTTTTTGTTATAATCCTAT
ATTTATCTTAATTGTTAATTCGGTTCAATACCACACTCTATTAGTTGTTT
ATGCCTTTATCATCCATCATCGTGTTTTGGTTTGTTTCTAAAAAAAGTTG
TTTTTATGACTATAGAAACAACAGAACCGTTAGGTGTATGACACATGAAC
TGCAGTTTTCACATCTTACTGTTTTAAGTGTATATCTTCTTTCGACCGTT
GATAAGATATATTCATTTAAAGGGTATATAGTTTTGCAAAGAGTTGAGAT
CATTTCATGAAATTTGTTTACTCGGTTGAAAATAAANTAAGACTTGTAAA
ATTACCGAGAAAGGGTATATAGTTTTGCAAAGAGTTGAGATCATTTCATG
AAATTTGTTTACTCGGTTGAAAATAAATACTCGAACGACCGAATTTATTT
AGAATTGTTTTATGAACTTTTGTTTTTATTTTCGTCATGTTTCAGAGCAA
ATTGATTGACAGTATGCGAGAAAAGATCAACGAGTTACGCGACCAGGAGC
AAGAAATTGCTGAAGAAATCAAAATGAACGAGGAACTCGGCAAAAAGGTA
CTCGGCATGGTCGAATCTAAAGCAACTCAAAGCGAATTTTCAAAATACGA
GTTGTTTATTGGCGAGTTGAACAAGATTGTAGCTTTATTGTTATCTTTAA
CTCAACGTTTGCATCGATACGAGATGATGTTACAAGATTTGGACATGACT
AATGAAAGTGATAAACTGAAAAAGGTATAACTGATGCTCTTTTTTATATC
TTTCCAGATCTTTCCCTAGTTATGGTAAACTTTTGGTACAGAAAGAAACT
TTACTTTTTTACATTTTCAAAGCACAAATGCACGTTTTTTTAGTAGAACA
TCAAAAATTCCTTCGGATGTTCTTAACTTTTTGAGTTGTTTTCCCAAAGA
TGTTTTTGAAATGTTTTTATTTTCACCATTTTGTGAGTATTTTTGTTCGA
TTTCCTAAGAAATCGGGTGTTTTAGAGTCTGCTAAGCCTTAATATATTTT
GGCCTTCAAAGCCTTATGTTCTTACATAGTTTGTCCTCGTTAAAAAGGTA
ATTTACGGTTGGAAATACCGTATATATTTGAGAAGAATGATCTGGGCTAA
AGATTTTTGAAAATGCTAATAATCTTTTAAGTGTTAGCCAAAATTTAATT
ATTACAGAAGTGTTTTATCCTTATGTTAATGACCCTTTTTTCATTATTTA
GGATGGTCTCATCTCGAAGATCGACAAATTAAAAAGCCAACACGAAGAAG
CGTGTTATTTACGCGATGTAAACGACAAACGTGGCGATAACGTGTCTAAT
TTCCTCGCTAAATATTGTGACGAGGAAGAATTTTCCGATTTTCAATACTA
CGTTGACATGAAATCACAACTCGCTCTCATGCAATCTGAAATCCGTGAGA
AAGTCAAACTGGGCGAAGAACGTTTGAAAGCTCTTGAACAAACCGGATCG
GATTGGGGTATCGGTTGATATTGGATTACTTTTCATCGGAATTGGTTTTA
TTTGTGAAAAAAAAATTGAAAATGTGAGAGTAGTGTATGTGTTTTTTGGA
CCTACCCCGGTGGGGTAGAGGTCCTATAAATTAACCGATGTCCGTCCGTC
CGTCCGTTCGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010581-exon-sc0000107-1575043694:486397..486491 | TCONS_00010581-exon-sc0000107-1575043694:486397..486491 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1575043694:484014..484881 | TCONS_00010581-exon-sc0000107-1575043694:484014..484881 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1575043694:481868..482146 | TCONS_00010581-exon-sc0000107-1575043694:481868..482146 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1575043694:480946..481390 | TCONS_00010581-exon-sc0000107-1575043694:480946..481390 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1510915933:486397..486491 | TCONS_00010581-exon-sc0000107-1510915933:486397..486491 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1510915933:484014..484881 | TCONS_00010581-exon-sc0000107-1510915933:484014..484881 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1510915933:481868..482146 | TCONS_00010581-exon-sc0000107-1510915933:481868..482146 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1510915933:480946..481390 | TCONS_00010581-exon-sc0000107-1510915933:480946..481390 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1491911889:486397..486491 | TCONS_00010581-exon-sc0000107-1491911889:486397..486491 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1491911889:484014..484881 | TCONS_00010581-exon-sc0000107-1491911889:484014..484881 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1491911889:481868..482146 | TCONS_00010581-exon-sc0000107-1491911889:481868..482146 | Clytia hemisphaerica | exon |
| TCONS_00010581-exon-sc0000107-1491911889:480946..481390 | TCONS_00010581-exon-sc0000107-1491911889:480946..481390 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:480946..486491 - |
Blast
BLAST of TCONS_00010581 vs. Swiss-Prot (Human)
Match: SHRM2 (Protein Shroom2 OS=Homo sapiens GN=SHROOM2 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.500e-27 Identity = 72/191 (37.70%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 907 QEESLPSTPTSID-DLDNEKSKLIDSMREKINELRDQEQEIAEEIKMNEELGKKVLGMVESKATQSEFSKYELFIGELNKIVALLLSLTQRLHRYEMMLQDLDMTNESDKLKKDGLISKIDKLKSQHEEACYLRDVNDKRGDNVSNFLAKYCDEEEFSDFQYYVDMKSQLALMQSEIREKVKLGEERLKAL 1476
Q+E + + +D DL +K +LI+S+ K+ LR+ + + E+++ N LG +V +V+ SEF K+ +FIG+L+K+V LLLSL+ RL R E L +LD + + + L+ K L QHE+A L++ D+R V + LA Y EE +D++++V MKS L + Q E+ +K+ LGEE+LK L
Sbjct: 1418 QQEHEEDSGSDLDHDLSVKKQELIESISRKLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLSGRLARVENALNNLD--DGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANYLSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCL 1606
The following BLAST results are available for this feature:
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