TCONS_00010563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010563
Unique NameTCONS_00010563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010563 ID=TCONS_00010563|Name=TCONS_00010563|organism=Clytia hemisphaerica|type=transcript|length=304bp
CTTTAATTATATAGCGATACCTGCAACAAAACATTCAGCATCAACTTTAG
GGTGAATTCCTTGTTGAGGAACGCAAGCTCTGACAACACGACTATTCAAT
CGTAAAGGTGATGACAACTCAATAAGTGCAATGTCAGCATTTAAAAAACC
ACCAACGCCATAGCTTTGATGCATGATAATTCGTTTTGGtgtcatttttt
gttgagttCCTTCTCTAGATTTGATGTTATGTGCACCAGCAATGACTCTC
ATGCTTGTTGGTGAGTTCTTGCGGCTGTCAACGCAATGGCTTGCAGTCaa
aatc
Run BLAST on NCBI

transcript from alignment at sc0000107:357998..360878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010563 ID=TCONS_00010563|Name=TCONS_00010563|organism=Clytia hemisphaerica|type=transcript|length=2881bp|location=Sequence derived from alignment at sc0000107:357998..360878- (Clytia hemisphaerica)
CTTTAATTATATAGCGATACCTGCAACAAAACATTCAGCATCAACTTTAG
GGTGAATTCCTTGTTGAGGAACGCAAGCTCTGACAACACGACTATTCAAT
CGTAAAGGTGATGACAACTCAATAAGCGCAATGTCAGCATGCAAGTGTCC
GTCATTATCATAATGAGGATGCATGATAATTCGTTTGGCTGCAATTTTTT
GTTGGCTTGCTTCCTTGATCTTGATATTATGTGCACCAGCAACTACATTC
AATTGTCTCGGTGTGTTCTTACGACTTGCCACACAATGACTGGCTGTTAG
AATCTAAAGAATAGATACATCTGTGGCTTTAATTTTAAAGGTTGCTTATA
TGGGAGTGTTCTTAGCTTTTTGTTTCATTGATATTTATTGCAGAAAATTG
AATTGTTTTTAGGTTTTTCGAAGTTAGATTTTACTTTGGTCTAACATCGA
CTTTTTTATAACTTTCTCTAGAATATATCAGGCCCTTTACCTATAAATGT
ACCTATTGTTATTCAAAAGATCAAAATAGGAAGGAAAACTTAGCTCACCC
AGTTTGGTGTCAAGATTGAGCCACCGCAGAAATGAAATCCACTGGAAGTT
TGCAATGAGACAATCCATGGCCAAGCTCCTTCTTTTGCGTCAACTCCATT
CACAACTCGACTTTGTGAGACCTTGGATACACCACATTGACCTATTGTCA
GTTGATGGGTAAATTGTACATAAAACTAAGAAATTGTTTGAAAAACAAAA
ATTAAAAAAACTAAAACAAGTGAATCTATCTAATTGCTAGTACCATAGAA
TCTAGACCATATGTAGAGTGACCAATGGGTTTACACTTGGTTAAGAAAAA
CAAACACCACAATCATGGTCAAAATCTATTGAGAATGTAACTTATTTCCT
CGCTTTTCGAAATTTGGAGTTCGAGCGAGAAAGTCGCTTCTGGGCTAAGA
CTCGCACGTGACGGTTCCGTTTCGCTCCGCAACGAAATGAAGCCATTCTA
TTGGTTAAATTCAAGTGTTACGTCACTTCTAACCAATAGAATGGCTTCAT
TCTGTTTCGGAGCGAAACGGAACCGTCACTTGCAAACATGATCTAATTGA
TAAATTCTGAGCCCTATTGGACCATTCTTGAACTTTTCTTAAGTCTAGCA
TTAAAACTCAGAGTTAAAACTCTACCCTTCCAACATAATTTAAAGCGCTT
CTAAATCGTTTGTGTTAGAAATTTCCCTTTTTTCTCAAATATTATGACCA
TGATTGCAGCTATTACAAAGAAGCTGGTGTAAAGTACGGCATAAAGATTG
GCAAATGTCGAGGAAAATTTTAAATGAGTGATACTTACATGCTACGCTGG
TAAGAAACGTAAATGCCAATACCAATCGTAACATCCTCGTGGTGATTTTA
AACGAAAAAAAATGATTCATAAAATCCTAATAGCGTTTCCGCTTTTATAG
TGCAATTGAAATTGAATACAACTTTGTACAGCTACGCAAAATATTATTCA
AATATTCTTGTTAAAAGCCTAATTTTTCACTACAAATTTCAATCGTATTT
AATAAAAGTATCAATATTAACAACAACCTGATCAAATTTTATGATCATTT
AGGGTGGAAAATTACCTATTTGTATTAAATAAAAATGAATTTTTTGAATT
GAATTCTACCAAACCATAATTTTATCTATAATTTTTGTTTCTTAGGCAGC
GTTAAATGGCAGTTTAGGGTGTTGCTAAGCCAGACGCTACTGGTGGAACT
TGGAAAATAATAAGCAAATAACATTCAAATTCAAAAAATATATATTTTTC
ATTCATAAATTAATCTTTTAATGACCTTCAATGTATATATTATATAAATT
ACAAGTTTGGAACATATCGTTTAACCCAGCTCAAATATTTATTGAGTGGG
GAGTAAGCGCTAATACCATAACATCCACGGTAGACATAACTTGCAGCACC
TTCGACTTGCCATGATTTTCCATCAGATTTCAAACACATCAATGGACCAC
CAGAATCTCCTTGGCAAGCATTGGCTTTTCCTCGGACACCATGACCAGCG
ATAACTTGTTCTTTACCTTTGTTGTTCATAATTGGGAGTTTTGCTTGTTG
AAGTTTTTCAGGTGACCTTCTTGGATTGTATGAAATTCTTCCCCAGCCTG
AATGAAATAAAATAACATATCCAAGATTCAGATGGTTATTTTATATTAAC
AACAGATTCCCACTGAGTACCACTCATTACTCTGCAACTTCTGCAACTAT
TGGCTCAACCACGGGTCTTTGGCAAACAGGTTGCGTAGTGTTGGCTTCAC
CGCAAGTGAGGGTGGTACAAGGGGTACCCCCTGGACATAAAGGTTAAGCT
AATGTTGCTTCTCAGTTACGGAAACAGCCAGCTAACTGATTGATTGAGAT
CAGATTCAAATGAGGAAGTTCATTTACTCAGGGACAATTTTTGGATAGTT
ATAGCTTCATATTCTTCCTAACCTTGAAATTTTTCAAGAACTTTAGACAG
TTCAGAGAAAACTGAAACCTATTTAAAGGCTTAAATTCAGAAAGTTTTCT
TTCTTCTCCGAAACCTCAAATCGTAAAACCAAGAAAACCAATCTTACCGG
CGATATAACATTTTGTTCCAACTTTAGGGTAGACTCCTTGTTGAGGAACA
CAAGCTCTGACAACACGATCATTCAATCGTAAAGGTGATGACAACTCAAT
AAGTGCAATGTCAGCATTTAAAAAACCACCAACGCCATAGCTTTGATGCA
TGATAATTCGTTTTGGTGTCATTTTTTGTTGAGTTCCTTCTCTAGATTTG
ATGTTATGTGCACCAGCAATGACTCTCATGCTTGTTGGTGAGTTCTTGCG
GCTGTCAACGCAATGGCTTGCAGTCAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005918XLOC_005918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010563-exon-sc0000107-1575043694:360772..360878TCONS_00010563-exon-sc0000107-1575043694:360772..360878Clytia hemisphaericaexon
TCONS_00010563-exon-sc0000107-1575043694:357998..358194TCONS_00010563-exon-sc0000107-1575043694:357998..358194Clytia hemisphaericaexon
TCONS_00010563-exon-sc0000107-1510915933:360772..360878TCONS_00010563-exon-sc0000107-1510915933:360772..360878Clytia hemisphaericaexon
TCONS_00010563-exon-sc0000107-1510915933:357998..358194TCONS_00010563-exon-sc0000107-1510915933:357998..358194Clytia hemisphaericaexon
TCONS_00010563-exon-sc0000107-1491911889:360772..360878TCONS_00010563-exon-sc0000107-1491911889:360772..360878Clytia hemisphaericaexon
TCONS_00010563-exon-sc0000107-1491911889:357998..358194TCONS_00010563-exon-sc0000107-1491911889:357998..358194Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:357998..360878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214053	0	0	1.59432	0	0	0	0.000822217	0.120087	0.0746806	0	0.130351	104.772	72.7764	0.560611	0.515125	70.3666	96.239	309.506	327.872	309.873	322.774	360.3	395.621	0	0	0	0	0.197549	0.583088
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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