TCONS_00010558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010558
Unique NameTCONS_00010558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010558 ID=TCONS_00010558|Name=TCONS_00010558|organism=Clytia hemisphaerica|type=transcript|length=1116bp
ATATAATGGAGTGgtatttttggaactttttaaCTTAATGTCCCGTCAAA
TTGTTATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCG
AGTATAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGgat
tcattttttcattatgaTGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAG
CACCTTATGTAGAAGGAAGAGGTGGTATCTCTAAAGTTCAAGAAAAACGA
ATCGTTAATGGAGTTGAAGTAAACCCAGAAGGTAAATGGCCGTGGATCGT
GTCAATATCGATACAAAATCAAGTTGCAAAAAGAAACTGTGGTGGTAGTA
TTTTGACAAGTACCTGGATTTTGACAGCCGCTCATTGCTTCGATGCTCGT
CCTCCAAATTTTCCTCATCCACCTGTAGCTACGGATATCACAGTAGTAGC
CGGTGCACATAATATTCAACGTCAAGAAAGATCACAACAAAGTAGAGGGG
CTACAAGATATATCCTGCACCCAAACTACAATCCTCATACTCTAACAGCT
GACATTGCTTTGATCCAGTTATCGAGTCCATTAATTTTCAATCAGCGAGT
TAAAAGAGCTCGTATTCAAGCCAAAGACGTCTATCCGAAAATGAATAAGA
ATTGTTATGCTGCTGGCTGGGGACTGACCAATGTGCATCCAAAGATCTCA
CCCGCAACATTGCAAGAGGCACGGCTCCCTATCATCCAGAAGAACGTCCA
TAATGAGCATATCTATGCAGGACATGAACAGCCGGCAAACACGTGGCCAA
GCACATGCATGGGCGATTCTGGTGGTCCATTGATGTGTGAGAGGTCTACT
GACAAGGCATGGGTAGTAAAAGGAGTATTATCTCATGGTGCAACAGATTG
TACCGTTTACAGTGCATTTACACCGGTAGCCACGTACTTGAACTGGATTA
AAACATTCAACGTTGGGGATATTAAAACTTAGAATTTCTTACAtatgttt
gatttgaaataaaatgagTCTACAGTAACAATGATAATTTtgttgtatta
aaaaaaaaactttactcCACGCCTTAttctatacacgttttttgtaagaa
caaactatataagaaa
Run BLAST on NCBI

transcript from alignment at sc0000107:335778..339428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010558 ID=TCONS_00010558|Name=TCONS_00010558|organism=Clytia hemisphaerica|type=transcript|length=3651bp|location=Sequence derived from alignment at sc0000107:335778..339428- (Clytia hemisphaerica)
ATATAATGGAGTGGTATTTTTGGAACTTTTTAACTTAATGTCCCGTCAAA
TTGTTATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCG
AGTATAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGGAT
TCATTTTTTCATTATGATGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAG
CACCTTGTAAGTATTTTGATACCTAGCTTCGAATTTCAAAATAACTACCT
TGGCTTTTTGCTTTTACTTTTTACCCTTTAACTGTCATGCGCTCGACCTA
TTTGCCAAATGTCGGCATATGCCGACATGAGCGAACACAAAGTTTACCAT
CACATTTACTCTTATTTTCTGAAAAATATCAGAAATATGAGTGATATGTG
TTTGCTTTGAGTTGAAAAAGATATAATGATTTTCAATTTTCATATATTAT
GAAAAACATTTTTTAAATATAATTTAATTACTAAACTTTCTCAAAATCGA
ACTTTTAATAAATTTCAAAAAAAACACTACAAAGAATGGAAAGTGCTCAT
GTCGGCAAATGCCGTCATCGGCAAAGAAATCAAAAGCGCCCTCCATGTCA
ACATTCTTTTCTTTTCTTTTCTTTTTTTTAAAAATGATATAATATTCACT
AAAATAATGCGGTAGACTTTCATTTCTTATCGATGGTCTCAAATTATTTG
AGACAGACAGAGCTCGAGTTTAACATAAGTTTTTCAAATGTTACACGCAT
TATATTATTGCCGGCATTAAATATCACACATATAGAATAAGCAATGATCA
NAATATTCCAGACGTTGAACAAATATTTAGCCATGGGAAAGGTTTATTTC
TCTTCTTAAAAGTCCATAATATTTATCCAGCATTCAATTGGTCGAAACAT
TATTATTCCACCAAATAGGCATTTAAACAGGCGTTTATACTGTTCATTTA
TTTACAGGAAAATATTCTAGACTTTGTTATTTTACAGGTCTGTGATTAAT
ATATTTTCGAAGACGCTGAACAAATGTTTAGCCATGGCAAAGGTCTGGGA
TATAATGGAGTGGTATTTTTGGAACTTTTTAACTTAATGTCCCGTCAAAT
TGTTATAATTTGTATTAATCAAGCTGTCCAAACCTGGCAAAAGACTTCGA
GTATAAATTGCGTGCGAATCTTTCTGAAAATTTACAATCACTTTTGGATT
CATTTTTTCATTATGATGTTGAAATTGGTTCTAGCAGTTCTTGTTGTAGC
ACCTTGTAAGTATTTTGATACCTAGCTTCGAATTTCAAAATAACTACCTT
GGCTTTTTGCTTTTACTTTTTACCCTTTAACTGTCATGCGCTCGACCTAT
TTGCCAAATGTATATGCCGACATGAGCGAACACAAAGTTTACCATCACAT
TTACTCTTATTTTCTGAAAAATATCAGAAATATGAGTGATATGTGTTTGC
TTTGAGTTGAAAAAGATATAATGATTTTCAATTTTCATATATTATGAAAA
ACATTTTTTAAATACAATTTAATTACTAAACTTTCTCAAAATCGAACTTT
TAATAAATTTCAAAAAAAAACACTACAAAGAATGGAAAGTGCTCATGTCG
GCAAATGCCGTCATCGGCAAAGAAATCAAAAGCGCCCTCCATGTCAACAT
TCTTTTCTTTTCTTTTCTTTTTTTTAAAAATGATATAATATTCACTAAAA
CAATGAGGTAGACTTTCATTTCTTATCGATGGTCTCAAATTATTTGAGAC
AGACAGAGCTCGAGTTTAACATAAGTTTTTCAAATGTTACACGCATTATA
TTATTGACGGCATTAAATATCACACATATAGAATAAGCAATGATCCTTCT
TTACGCATACAGATACATACTATTGGACCTAATTTAGACGTTTTAATTTT
TAGATGTAGAAGGAAGAGGTGGTATCTCTAAAGTTCAAGAAAAACGAATC
GTTAATGGAGTTGAAGTAAACCCAGAAGGTAAATGGCCGTGGATCGTGTC
AATATCGATACAAAATCAAGTTGCAAAAAGAAACTGTGGTGGTAGTATTT
TGACAAGTACCTGGGTACGTTTAGGAATAGTAATTCTGGGATTTAGCTCA
GTAACTTGATAATATAAAACCGATTTTTGAATAATACAACGTATGTTTTC
AATTGAAAAACATAAAACTAGCGAAAGGACTCAAATTCAAAAAAAACTTA
CTCGAGAATATTCAGGGTGGTGTAGCTTGGAAATGACTGGAAAAAAATTA
TTGCAAATTGACGAAAGTCAGGACCGTTAGCAATAGGTGGTCCACCTAAA
CATATTCTAAAATCTTGATGATCACGTGATCAACTTTCAACTGACCCATA
TTAAAAATCCTTTTCATAGATTTTGACAGCCGCTCATTGCTTCGATGCTC
GTCCTCCAAATTTTCCTCATCCACCTGTAGCTACGGATATCACAGTAGTA
GCCGGTGCACATAATATTCAACGTCAAGAAAGATCACAACAAAGTAGAGG
GGCTACAAGATATATCCTGCACCCAAACTACAATCCTCATACTCTAACAG
CTGACATTGCTTTGATCCAGTTATCGAGTCCATTAATTTTCAATCAGCGA
GTTAAAAGAGCTCGTATTCAAGCCAAAGACGTCTATCCGAAAATGAATAA
GAATTGTTATGCTGCTGGTGAGTAAGACTTGTCTCCAAAGTTCAAATGAA
AACTGGAGAATAAATAAATATTTCACTATCGACCTCCCCCTGTAGGCCGA
GAAAAGTTTATTTTAACTTCCTAGAAAAAAGTCTTCTATGGTTACCTTTA
AAAAAATCAATTACTGTGCTTTTCACAGAATTTCATCGAGTGTAATCAAT
TGGAAGACCAGTGTGTGATTCAGGGAAGTGAATGTACCTTCGCCCGGGTC
AATCCATATCATGTGAGTGCAGTTGGGTACAACTACTCTCTGAAACAAGG
GTAGATAATCGTGCCACGACACTTGTCGCTATATGTTCGGTCACGCTATT
AATACCTTTCTTACTATGGTATACGTCATGACAGAGCAATGATTCTGCAG
AGCAATGATTCTGCAGAGCAATGATTCTGCAGCGCAATGATTCTTATTCT
CGCGTGATTAAGACCCATTTCGAGATATCACGGGGCGTATAACCATCCAT
CTTTCGAATTAACCAGAAGTAAAAATAAGTTTGATCATATTTTGTGACAG
GCTGGGGACTGACCAATGTGCATCCAAAGATCTCACCCGCAACATTGCAA
GAGGCACGGCTCCCTATCATCCAGAAGAACGTCCATAATGAGCATATCTA
TGCAGGACATGAACAGCCGGCAAACACGTGGCCAAGCACATGCATGGGCG
ATTCTGGTGGTCCATTGATGTGTGAGAGGTCTACTGACAAGGCATGGGTA
GTAAAAGGAGTATTATCTCATGGTGCAACAGATTGTACCGTTTACAGTGC
ATTTACACCGGTAGCCACGTACTTGAACTGGATTAAAACATTCAACGTTG
GGGATATTAAAACTTAGAATTTCTTACATATGTTTGATTTGAAATAAAAT
GAGTCTACAGTAACAATGATAATTTTGTTGTATTAAAAAAAAAACTTTAC
TCCACGCCTTATTCTATACACGTTTTTTGTAAGAACAAACTATATAAGAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005916XLOC_005916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010558-exon-sc0000107-1575043694:339223..339428TCONS_00010558-exon-sc0000107-1575043694:339223..339428Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1575043694:337365..337525TCONS_00010558-exon-sc0000107-1575043694:337365..337525Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1575043694:336762..337059TCONS_00010558-exon-sc0000107-1575043694:336762..337059Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1575043694:335778..336228TCONS_00010558-exon-sc0000107-1575043694:335778..336228Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1510915933:339223..339428TCONS_00010558-exon-sc0000107-1510915933:339223..339428Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1510915933:337365..337525TCONS_00010558-exon-sc0000107-1510915933:337365..337525Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1510915933:336762..337059TCONS_00010558-exon-sc0000107-1510915933:336762..337059Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1510915933:335778..336228TCONS_00010558-exon-sc0000107-1510915933:335778..336228Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1491911889:339223..339428TCONS_00010558-exon-sc0000107-1491911889:339223..339428Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1491911889:337365..337525TCONS_00010558-exon-sc0000107-1491911889:337365..337525Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1491911889:336762..337059TCONS_00010558-exon-sc0000107-1491911889:336762..337059Clytia hemisphaericaexon
TCONS_00010558-exon-sc0000107-1491911889:335778..336228TCONS_00010558-exon-sc0000107-1491911889:335778..336228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:335778..339428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.020956	0	0	0	0	0	0	0	0	0	11.5073	4.79106	0.160894	0.25904	0	0	435.227	406.645	0	0	0	0	0	0.0663246	0	0	0	0
Blast
[Close]
BLAST of TCONS_00010558 vs. Swiss-Prot (Human)
Match: CTRB2 (Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 2.916e-31
Identity = 77/246 (31.30%), Postives = 122/246 (49.59%), Query Frame = 2 
Query:  248 RIVNGVEVNPEGKWPWIVSISIQNQVAKRNCGGSILTSTWILTAAHCFDARPPNFPHPPVATDITVVAGAHNIQRQERSQQSRGATRYILHPNYNPHTLTADIALIQLSSPLIFNQRVKRARIQAKDVYPKMNKNCYAAGWGLTNVHPKISPATLQEARLPIIQ---------KNVHNEHIYAGHEQPANTWPSTCMGDSGGPLMCERSTDKAWVVKGVLSHGATDC--TVYSAFTPVATYLNWIK 952
            RIVNG +  P G WPW   +S+Q++     CGGS+++  W++TAAHC            V T   VVAG  +    E + Q     +   +P ++  T+  DI L++L++P  F+Q V    + + D        C   GWG T  +   +P  LQ+A LP++          + + +  I AG         S+CMGDSGGPL+C++  D AW + G++S G+  C  T  + +  VA  + W++
Sbjct:   33 RIVNGEDAVP-GSWPW--QVSLQDKTGFHFCGGSLISEDWVVTAAHC-----------GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASG-----VSSCMGDSGGPLVCQK--DGAWTLVGIVSWGSRTCSTTTPAVYARVAKLIPWVQ 257
The following BLAST results are available for this feature:
BLAST of TCONS_00010558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB22.916e-3131.30Chymotrypsinogen B2 OS=Homo sapiens GN=CTRB2 PE=2 ... [more]
back to top