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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010551 ID=TCONS_00010551|Name=TCONS_00010551|organism=Clytia hemisphaerica|type=transcript|length=1261bp
GAGACAAGGGAGACTCATTGTCATTCAAATGAAGCCCATTCTTTCTCACT
GCAAATGAAATTTAGATAATAAATAGGGAACCTTTGAATGTTTTAACATC
AGTTTTCACTAATTCAGTAAGTGATTCAGCTGTTATCAAAATGATCAGAA
TTTTTCTACTTGTGGTATTTATCGTCATTGCTTCTGATATACAAGGAAGA
GTACTAGAAAAACGTATTATCCATGGAACCGAGGCTAAACCAGGTGCATG
GCCATGGATTGTCTACATCGAAACAAAAAATCGATCCTGTGGTGGTACCA
TCCTTTCACCGACTTGGATTATGACTGCAAGCCATTGCATCGATGACAAC
CCAACAGCAATCACTGTAGTAGCGGGCGCACATAACATCATGGCTATGGA
AGACTCACAACAAGAAAAATGGGCTAAAAGATACATATTGCACCCAAACT
ACAGGAAGGGTAGTTTTGAGTCTGATATTGCCTTGATCGAATTATGGACA
CCTTTCGTATTCAACGATCGAGTTAACAGATCATTACTTCCAGGATGTAA
CGATTACCCACTTGTTGGCACATGGTGTTATATTGCTGGTTGGGGACGAA
CGCAATACGACCCAGTGATACTACCTGATAAATTACAACAAGCATTAATC
CCCATCCGACAACAAAACGAAAAAGATGAACATATCTTGGTAGGGTTTGG
TGTCCaaggaaaaggaaaaggaaacgCATGTCGAGGAGATTCTGGAGGTC
CACTGATGTGTAAGTCTGCTTCAGGTCATTGGATTGTAGAAGGGGCATCG
AGTTGGGGATACAAAGAATGCCATAGTGTCAGTGGTTACACACCATTAAC
CAAATATTTGAACTGGGTCAAACAATATGCCCCAGTATAGTTTTTACATT
ATTTTCTCCCTTCGATATTGAAACGAAAAGAATCTATGAATACTTAACTT
AATTTCGTCATAatcattttttggtattttggttCGCATCAATTTTGATA
GTATTTTCACCCGATCCTTCATTTCCCTTTTTGATCTAAGAAACTTCATA
TTTTTGCCTTTCAAAACTTACTGTAACCTACCGTACTTACGATAGTTCAA
TGCACACCTTGGATTTTACCGAGATTTCAGTAACCCCGTCAAGATTTTCG
GTAGATATTTCAGTTAACATTTTGTAGACCCCTAGGCTTCTGCTCAAAAT
CACAAGGCAAAGTAGCTGCGATGGCAATATTTTGTCTAAAACTTGGGTAT
GTCGTAAGCTT Run BLAST on NCBI transcript from alignment at sc0000107:329805..332770- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010551 ID=TCONS_00010551|Name=TCONS_00010551|organism=Clytia hemisphaerica|type=transcript|length=2966bp|location=Sequence derived from alignment at sc0000107:329805..332770- (Clytia hemisphaerica)
GAGACAAGGGAGACTCATTGTCATTCAAATGAAGCCCATTCTTTCTCACT
GCAAATGAAATTTAGATAATAAATAGGGAACCTTTGAATGTTTTAACATC
AGTTTTCACTAATTCAGTAAGTGATTCAGCTGTTATCAAAATGATCAGAA
TTTTTCTACTTGTGGTATTTATCGTCATTGCTTCTGGTAAGTTCATACGA
CCTTTGTAATTATTTGACATTTTCAACGGATACGATCTCATAAATCATTC
TCCATCCTAGGCATCTGACGAGTACACGTTTTGTTTATAAGAACAATTTT
ATAAAAACACGAGCCTGAAAATTGATCAAAATCTTAGAACAAATTAAGAA
CTATCTAAGCCTCAGATTTCGAAATTACTAAAAAAGTACTGATTTTAACA
GATTTAAAGTTGAAACCCATTTTTAAGAACATCGTAAGAGCATTTATAAG
ACTTAAAATTAAAAAAAAATTAAGAACCAACTCAGTCTGACTAAAAATTT
ACTGTAGTTCTTATTTTGACGTTTTCGTTCTGAAATGTTACAATTCTTCA
AGTCATTTCATTTAAACGCCAATTTATAAGCAATCCTTTAATAATGATTG
AACACGTTAAAGGTATTCTTTGGTATAAATTTTACCTTTCACGAAAATTA
ATTTCATATTTTGAAGCTTATGAGTTGGGAAAACATAAGTTCAAATCTTC
AAGATCATTATTTTTTGGCTTAATTATTTAGATATACAAGGAAGAGTACT
AGAAAAACGTATTATCCATGGAACCGAGGCTAAACCAGGTGCATGGCCAT
GGATTGTCTACATCGAAACAAAAAATCGATCCTGTGGTGGTACCATCCTT
TCACCGACTTGGGTAAATTTAATTAAGGATTTGCCATGCAAATATAACTT
ATGCAACCATTATCTATAATTCCTACTTTTCTTTTTTTACGAACCAAAAC
ATCTTTATAACCAAAACAAAGCATACAAAGTATCTAAAAATCTGAATCCA
AAAATGAATGCCTCTATTAAAAACTTATTTTTTACAAAATTCTGACAACA
AAACCCGGTATTTATATCAAAATCCAACTGATCCACAACAACGTCTTTCC
ATAGATTATGACTGCAAGCCATTGCATCGATGACAACCCAACAGCAATCA
CTGTAGTAGCGGGCGCACATAACATCATGGCTATGGAAGACTCACAACAA
GAAAAATGGGCTAAAAGATACATATTGCACCCAAACTACAGGAAGGGTAG
TTTTGAGTCTGATATTGCCTTGATCGAATTATGGACACCTTTCGTATTCA
ACGATCGAGTTAACAGATCATTACTTCCAGGATGTAACGATTACCCACTT
GTTGGCACATGGTGTTATATTGCTGGTGAGATATTATTTCTTTTGGAGAC
TCAAATTTTACCTCCCCTTTTCACAGATCTGGTAAGATTTTTTAGCAAGT
GGGGTAAAAATATCGGACCAAAATCAACGGCAATTGATATTCCCATGTTT
TTATGGCTGGGGATTTGAATTCCATTGTTTTCGAGTCATAAAACTCAGTG
GTTATGGGATAAATAACACAATATTTTACAGCAATGATTTGCTTATCTGA
TTATTTTTAGCGGGGACAAAAATTAGAGTATAATTTTCCACAGTATTTTG
GCCAATTTTTTCAGTGGGAAGGGGTCAGAGTGGGTCTGTGAGAAGAGGGT
GTGATTTTGTTGCATAGGGTTAGTACGTGTCACAAATAAACGTATATTTT
TATTACTTCAATATTACAGGTTCTATTACTTGACAGTTATTTTACAAACT
TTGAAGAGTATAATTTCCCCGGGTATATTTTACTGGACTTTTTAATCATT
TTCCTATTCGTATTTTGTTTTTCGTTTCTTAGGTCTGTTTATAACTCACT
TATTTCGGAATTCTTCTTTGATTAAAATCACTAAGAGCACCCATTTAATT
TCTGAGATTGGAATTCCACTATAGACCTAAATTTAAACGTATTTGTCAGA
ACTGGGTTTGCTATTTTGGTTTAGTTACANACCCATTTAATTTCTGAGAT
TGGAATTCCACTATAGACCTAAATTTAAACGTATTTGTCAGAACTGGGTT
TGCTATTTTGGTTTAGTTACAAATTCAACAGTTATTAGGGCACAAGGAGA
TATTGAAACTGTCGGAGAAACTAGTATGTATTAAAAACTTATTTTGAGGG
AGGGGGTAGGAGTCTAACTGCACCCACACCCATCAAAATAAGATGAGAAA
AATACTTTTATTAATTAATATTATTATTTTTTTACTCTGAAAGGTTGGGG
ACGAACGCAATACGACCCAGTGATACTACCTGATAAATTACAACAAGCAT
TAATCCCCATCCGACAACAAAACGAAAAAGATGAACATATCTTGGTAGGG
TTTGGTGTCCAAGGAAAAGGAAAAGGAAACGCATGTCGAGGAGATTCTGG
AGGTCCACTGATGTGTAAGTCTGCTTCAGGTCATTGGATTGTAGAAGGGG
CATCGAGTTGGGGATACAAAGAATGCCATAGTGTCAGTGGTTACACACCA
TTAACCAAATATTTGAACTGGGTCAAACAATATGCCCCAGTATAGTTTTT
ACATTATTTTCTCCCTTCGATATTGAAACGAAAAGAATCTATGAATACTT
AACTTAATTTCGTCATAATCATTTTTTGGTATTTTGGTTCGCATCAATTT
TGATAGTATTTTCACCCGATCCTTCATTTCCCTTTTTGATCTAAGAAACT
TCATATTTTTGCCTTTCAAAACTTACTGTAACCTACCGTACTTACGATAG
TTCAATGCACACCTTGGATTTTACCGAGATTTCAGTAACCCCGTCAAGAT
TTTCGGTAGATATTTCAGTTAACATTTTGTAGACCCCTAGGCTTCTGCTC
AAAATCACAAGGCAAAGTAGCTGCGATGGCAATATTTTGTCTAAAACTTG
GGTATGTCGTAAGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010551-exon-sc0000107-1575043694:332585..332770 | TCONS_00010551-exon-sc0000107-1575043694:332585..332770 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1575043694:331909..332039 | TCONS_00010551-exon-sc0000107-1575043694:331909..332039 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1575043694:331396..331666 | TCONS_00010551-exon-sc0000107-1575043694:331396..331666 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1575043694:329805..330477 | TCONS_00010551-exon-sc0000107-1575043694:329805..330477 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1510915933:332585..332770 | TCONS_00010551-exon-sc0000107-1510915933:332585..332770 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1510915933:331909..332039 | TCONS_00010551-exon-sc0000107-1510915933:331909..332039 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1510915933:331396..331666 | TCONS_00010551-exon-sc0000107-1510915933:331396..331666 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1510915933:329805..330477 | TCONS_00010551-exon-sc0000107-1510915933:329805..330477 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1491911889:332585..332770 | TCONS_00010551-exon-sc0000107-1491911889:332585..332770 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1491911889:331909..332039 | TCONS_00010551-exon-sc0000107-1491911889:331909..332039 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1491911889:331396..331666 | TCONS_00010551-exon-sc0000107-1491911889:331396..331666 | Clytia hemisphaerica | exon |
| TCONS_00010551-exon-sc0000107-1491911889:329805..330477 | TCONS_00010551-exon-sc0000107-1491911889:329805..330477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:329805..332770 - |
Blast
BLAST of TCONS_00010551 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.511e-36 Identity = 80/233 (34.33%), Postives = 126/233 (54.08%), Query Frame = 3
Query: 210 KRIIHGTEAKPGAWPWIVYIETKN--RSCGGTILSPTWIMTASHCIDDNPTAITVVAGAHNIMAMEDSQQEKWAKRYILHPNYRKGSFESDIALIELWTPFVFNDRVNRSLLPGCNDYPLVGTWCYIAGWGRTQYDPVILPDKLQQALIPIRQQNE-------KDEHILVGFGVQGKGKGNACRGDSGGPLMCKSASGHWIVEGASSWGYKECHSVSG--YTPLTKYLNWVKQ 875
RI++G +A PG+WPW V ++ K CGG+++S W++TA+HC T+ VVAG + + E++ Q + +P + + +DI L++L TP F+ V+ LP +D GT C GWG+T+Y+ PDKLQQA +P+ E + +++ G G ++C GDSGGPL+C+ G W + G SWG C + S Y +TK + WV++
Sbjct: 32 SRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVRTSDVVVAGEFDQGSDEENIQVLKIAKVFKNPKFSILTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMICAGASGV---SSCMGDSGGPLVCQK-DGAWTLVGIVSWGSDTCSTSSPGVYARVTKLIPWVQK 258
The following BLAST results are available for this feature:
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