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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010538 ID=TCONS_00010538|Name=TCONS_00010538|organism=Clytia hemisphaerica|type=transcript|length=213bp
ctctctctaattcgatctttaaagGGACGAAGAAATTTCTTCGAATCAAA
GAAAGATACTAATTGCTGATGGCGTTTTAAATGACTTTCTAGCTGAGGGG
ATTAACACTGTATGAAGCAAGTTTAATGTGAATGAAGGGAAaatgctaag
aatattttaatcGAAACAATATAGAAAAAATACTAAAACTAAGAAAAAAC
TCCAAGAGGAGGT Run BLAST on NCBI transcript from alignment at sc0000107:587599..591280+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010538 ID=TCONS_00010538|Name=TCONS_00010538|organism=Clytia hemisphaerica|type=transcript|length=3682bp|location=Sequence derived from alignment at sc0000107:587599..591280+ (Clytia hemisphaerica)
ctctctctaattcgatctttaaagGGACGAAGAAATTTCTTCGAATCAAA
GAAAGATACTAATTGCTGATGGCGTTTTAAATGACTTTCTAGCTGAGGTG
ATTACCACTGTATGAAGCAAGGGGAAGCAAGTTTAATGTGAATGAAGGGA
AaatgctaagaatattttaatcGAAACAATATAGAAAAAATACTAAAACT
AAGAAAAAACTTCGAGAGGAGGTTTAAGCGTGAAAAATGAATCACATTAT
CTGAATAAAATTCTTCTCCTGACCTTCTTGATACACATCAAGTTGATAAG
TTTTCGCGTGGACTTTATTTCGCTATCGAAAtcaattttcgcgtggattt
taTTTCGCTATCGAAATCAATTTTCGCATAGACTTTCTTTCGCTATCGAA
ATcaattttcgcgtggacaaatCCACTTTTTATGGCTCTTTTTCACCCAA
TTTATCTTATTTTCCCTAgaagttttttgcaaaaatccaGATTTTTAGTT
TTTCGCGCGATCtgaatttcgcgaaaatggtcaaaaatcttatatctcaa
aaactgaaattcTTACGTTATTATCGGCGTTTCATTTATCATTCCTGAAG
ATGAGACAGCACGGGCTAAAGGTTGATAAGTAAGaattctattttttgaa
aaataatccacgcgaaatttaatccgctAAATTTTGGTCGTTAAAAATAC
CAGCACAAAAAGGGCTGATAGTGTAGAACCGTCGTTAAAAAAGCTCTAGA
CTAAAGAAtgtaaaatgttatttttaacgcttttataaaaaaagaacatc
ctactcTTCATATAAGTAATAtgcaaaaaattgtattattatatattttt
tagaaatacgAAGTAAATATTAATACTCTTTTCTATTATTTTGTAAGGTC
TAAAATAATAATATTCTCATTAAATGTGAacctaaaataataaaaagatg
aCTAAAACGAAAGAACAGGTGACAATGAAATGTCTCTTTTCCAAAAGAAG
Caaacttcttataaaaaatcaaaataaaaaaaacgaaatgattaaaataa
agcaaaaaaaaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNttaaaagtgttaaagaatctaaaacataacttttatgttcagatact
aaaatcaattttctgactatggtcagagcccttaagttaaaatttttttc
cggccggccgcatgagagcttttttccttcacccgcattctggaaacact
acattttttcattttcgcctaaatatcaaaattttgtataCACTTTGTGT
GGATAAAGGCGGATCTgaatttgtttaaagaaaaatcttcaaaatttatg
cttattttgttacagttgactctctctaattcgaactttaaaagaaccaa
gaaatttcttcaaattaaagaaagattcgaattgctGAGGGCGTTTTAAA
TTACTTTCCAGCTTAGGGGATTAACACTGTATGAAGCAAGTTTAATGTGA
ATGAAGGGAAaatgctaagaatattttaatcGAAACAATATAGAAAAAAT
ACTAAAACTAAGAAAAAACTCCAAGAGGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010538-exon-sc0000107-1491911889:587599..587695 | TCONS_00010538-exon-sc0000107-1491911889:587599..587695 | Clytia hemisphaerica | exon |
| TCONS_00010538-exon-sc0000107-1510915933:587599..587695 | TCONS_00010538-exon-sc0000107-1510915933:587599..587695 | Clytia hemisphaerica | exon |
| TCONS_00010538-exon-sc0000107-1575043694:587599..587695 | TCONS_00010538-exon-sc0000107-1575043694:587599..587695 | Clytia hemisphaerica | exon |
| TCONS_00010538-exon-sc0000107-1491911889:591165..591280 | TCONS_00010538-exon-sc0000107-1491911889:591165..591280 | Clytia hemisphaerica | exon |
| TCONS_00010538-exon-sc0000107-1510915933:591165..591280 | TCONS_00010538-exon-sc0000107-1510915933:591165..591280 | Clytia hemisphaerica | exon |
| TCONS_00010538-exon-sc0000107-1575043694:591165..591280 | TCONS_00010538-exon-sc0000107-1575043694:591165..591280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:587599..591280 + |
Blast
The following BLAST results are available for this feature:
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