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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010535 ID=TCONS_00010535|Name=TCONS_00010535|organism=Clytia hemisphaerica|type=transcript|length=529bp
AAAAGGGAGCGGCTCTAACGTTTGGGCTACTAACATTCGAACATAGAGGC
AAACTGAAAATCAGAATACTCAAAGAAGTAAGGATTCTTCATCACAAGTG
GGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGGGGTAGGCTACAA
TGGGATGCCAAGTGGATGTGATGATGAAGAACTGCCATGGTCAAGAGTTG
GTGAAACATATTTGGATACAAAATATGCTTATGTGTGCCATGCTGAGATG
AATGCAATCATGAACAAAAATTCTGCTTCTGTCAAGAATTGTACCATATA
TGTAGCTCTTTTTCCTTGCAATGAATGTGCAAAGCTCATTGTCCAATCTG
GAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCTATGGAA
GCTAAAGCATCCCGAAAAATGTTTGAATTGGCTGGGATTAAGTACAGGCA
GCATATtcctaaagaagaaaaattagtGATCGATTTTTCTGtcatcaata
aaaacaaatctcAACCAACTGGCATGAAG Run BLAST on NCBI transcript from alignment at sc0000107:543337..545228+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010535 ID=TCONS_00010535|Name=TCONS_00010535|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000107:543337..545228+ (Clytia hemisphaerica)
AAAAGGGAGCGGCTCTAACGTTTGGGCTACTAACATTCGAACATAGAGGC
AAACTGAAAATCAGAATAGTGAGTAATCTCGTAACTTCAAATGATAATTT
ACCTCACACCTATTATGTAACATTGGGATTCACACCTTGTAAGGAAATTA
CATTTACATTACATTTGATAATTAGGAGTAATCAGAAAGTTTTAGTACAA
ATAGTAGAAAAAATATTCTTGATTATCAAACTTTGTAAGTTTTACCTGTt
ccaaaacaaatatggcaaaTAATNCAAATAGTAGAAAAAATATCCTTGAT
TATCAAACTTTGTAAGTTTTACCTGTtccaaaacaaatatggcaaaTAAT
ggagaaaatgttgaaaaagagcttggttttgataaaattgacaTAAATTC
CAAACGAAAAGAATATTTAAGTTGGGAAGATTATTTTATGGCAACAGCTT
TTCTAGCAGCTCAAAGAAGTAAGGATTCTTCATCACAAGTGGGTGCTTGC
ATTGTAAATGACGAAAAGAGAATTGTTGGGGTAGGCTACAATGGGATGCC
AAGTGGATGTGATGATGAAGAACTGCCATGGTCAAGAGTTGGTGAAACAT
ATTTGGATACAAAATATGCTTATGGTAAGAAAACTTCTTTCTCAGTAACT
TGGGTGGTGCCGACTCAGTGTACTGACCCATAGCTGGTGGGtggtttttt
ttctcaaaataaatttgaattagtATAGTGTACTAAGGGTGGTATCAAAA
CTCTGGTCATGGACAAAAACTAGCACAGTGTGCTAAAAATAAAGGGTGGT
GTTCTGAAttgatgaacaaaaaaattctgTACATCGTACAAAGTTATGAA
ATTTTGGAATAAATGATGAAGATATATGTcgcttttttgggacacactgc
gGCATAGTATAAAGAGCTTACTGTAGAGCTTTTCTATTCTAAATTTGGGC
AGAGAGTTTATAAGATAAGTGAGAGGAACTCCAAGatcttttaaatttca
ttaaatgaCTAATTTGACAAAGAATTTGGTCCAAGGAGGGGTAGGGTCAC
TCAAGTAAAACGGGACTTTCTTATGTATACCTTCTGTAATGGCCTTTTGA
TTGATAGCAAGATAATAACATACTAAAAATGCGAATTTGATTATCTATTA
CAGTGTGCCATGCTGAGATGAATGCAATCATGAACAAAAATTCTGCTTCT
GTCAAGAATTGTACCATATATGTAGCTCTTTTTCCTTGCAATGAATGTGC
AAAGCTCATTGTCCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAA
AAAATGGTGAATCTATGGAAGCTAAAGCATCCCGAAAAATGTTTGAATTG
GCTGGGATTAAGTACAGGTATGTGAAGTGTGTgatgcatagccctctttt
ggcgtcaatgcaatgtcttctttcaaaccttttcaagcaaagattttaac
aaccaactttgtgccctctttctgcctactctaacaattagaataggcag
ggcagaaagtcggccgtctaaactNTGTAGTGTTGCTTagcatctttttt
attttcagcgtCTTGGCGAAGGTAAACATTTAGGAATTTTATGTGCTGAG
GTTATTTTAATTTTGCAGATGCTATGAATACTGTACCATTTCTATTCTTA
AGACTTATTTTTGGTCAATTCTTTtggaattcaaaattgaaattatcatT
CAAAGGTTTTAATTTGAGCCTCAATTTTAGGACAATTACATATTATTATC
AattcttttgagaaaaattgagAAGTTTTAAACTCTAAATATCTTCTCCA
CAATTCACAGGCAGCATATtcctaaagaagaaaaattagtGATCGATTTT
TCTGtcatcaataaaaacaaatctcAACCAACTGGCATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010535-exon-sc0000107-1491911889:543337..543404 | TCONS_00010535-exon-sc0000107-1491911889:543337..543404 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1510915933:543337..543404 | TCONS_00010535-exon-sc0000107-1510915933:543337..543404 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1575043694:543337..543404 | TCONS_00010535-exon-sc0000107-1575043694:543337..543404 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1491911889:543796..543960 | TCONS_00010535-exon-sc0000107-1491911889:543796..543960 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1510915933:543796..543960 | TCONS_00010535-exon-sc0000107-1510915933:543796..543960 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1575043694:543796..543960 | TCONS_00010535-exon-sc0000107-1575043694:543796..543960 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1491911889:544490..544703 | TCONS_00010535-exon-sc0000107-1491911889:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1510915933:544490..544703 | TCONS_00010535-exon-sc0000107-1510915933:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1575043694:544490..544703 | TCONS_00010535-exon-sc0000107-1575043694:544490..544703 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1491911889:545147..545228 | TCONS_00010535-exon-sc0000107-1491911889:545147..545228 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1510915933:545147..545228 | TCONS_00010535-exon-sc0000107-1510915933:545147..545228 | Clytia hemisphaerica | exon |
| TCONS_00010535-exon-sc0000107-1575043694:545147..545228 | TCONS_00010535-exon-sc0000107-1575043694:545147..545228 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:543337..545228 + |
Blast
BLAST of TCONS_00010535 vs. Swiss-Prot (Human)
Match: DCTD (Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2) HSP 1 Score: 212.616 bits (540), Expect = 1.280e-69 Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 2
Query: 65 NTQRSKDSSSQVGACIVNDEKRIVGVGYNGMPSGCDDEELPWSRVGETYLDTKYAYVCHAEMNAIMNKNSASVKNCTIYVALFPCNECAKLIVQSGIKEVVYYSAKNGESMEAKASRKMFELAGIKYRQHIPKEEKLVIDFSVINKNKSQ 514
+ QRSKD +SQVGACIVN E +IVG+GYNGMP+GC D+ LPW R E LDTKY YVCHAE+NAIMNKNS VK C++YVALFPCNECAKLI+Q+GIKEV++ S K +S EA A+R +F +AG+ +R+ IPK K+VIDF IN SQ
Sbjct: 26 SAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVIDFDSINSRPSQ 175
The following BLAST results are available for this feature:
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