TCONS_00010535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010535
Unique NameTCONS_00010535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010535 ID=TCONS_00010535|Name=TCONS_00010535|organism=Clytia hemisphaerica|type=transcript|length=529bp
AAAAGGGAGCGGCTCTAACGTTTGGGCTACTAACATTCGAACATAGAGGC
AAACTGAAAATCAGAATACTCAAAGAAGTAAGGATTCTTCATCACAAGTG
GGTGCTTGCATTGTAAATGACGAAAAGAGAATTGTTGGGGTAGGCTACAA
TGGGATGCCAAGTGGATGTGATGATGAAGAACTGCCATGGTCAAGAGTTG
GTGAAACATATTTGGATACAAAATATGCTTATGTGTGCCATGCTGAGATG
AATGCAATCATGAACAAAAATTCTGCTTCTGTCAAGAATTGTACCATATA
TGTAGCTCTTTTTCCTTGCAATGAATGTGCAAAGCTCATTGTCCAATCTG
GAATCAAGGAAGTTGTTTATTACTCAGCAAAAAATGGTGAATCTATGGAA
GCTAAAGCATCCCGAAAAATGTTTGAATTGGCTGGGATTAAGTACAGGCA
GCATATtcctaaagaagaaaaattagtGATCGATTTTTCTGtcatcaata
aaaacaaatctcAACCAACTGGCATGAAG
Run BLAST on NCBI

transcript from alignment at sc0000107:543337..545228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010535 ID=TCONS_00010535|Name=TCONS_00010535|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0000107:543337..545228+ (Clytia hemisphaerica)
AAAAGGGAGCGGCTCTAACGTTTGGGCTACTAACATTCGAACATAGAGGC
AAACTGAAAATCAGAATAGTGAGTAATCTCGTAACTTCAAATGATAATTT
ACCTCACACCTATTATGTAACATTGGGATTCACACCTTGTAAGGAAATTA
CATTTACATTACATTTGATAATTAGGAGTAATCAGAAAGTTTTAGTACAA
ATAGTAGAAAAAATATTCTTGATTATCAAACTTTGTAAGTTTTACCTGTt
ccaaaacaaatatggcaaaTAATNCAAATAGTAGAAAAAATATCCTTGAT
TATCAAACTTTGTAAGTTTTACCTGTtccaaaacaaatatggcaaaTAAT
ggagaaaatgttgaaaaagagcttggttttgataaaattgacaTAAATTC
CAAACGAAAAGAATATTTAAGTTGGGAAGATTATTTTATGGCAACAGCTT
TTCTAGCAGCTCAAAGAAGTAAGGATTCTTCATCACAAGTGGGTGCTTGC
ATTGTAAATGACGAAAAGAGAATTGTTGGGGTAGGCTACAATGGGATGCC
AAGTGGATGTGATGATGAAGAACTGCCATGGTCAAGAGTTGGTGAAACAT
ATTTGGATACAAAATATGCTTATGGTAAGAAAACTTCTTTCTCAGTAACT
TGGGTGGTGCCGACTCAGTGTACTGACCCATAGCTGGTGGGtggtttttt
ttctcaaaataaatttgaattagtATAGTGTACTAAGGGTGGTATCAAAA
CTCTGGTCATGGACAAAAACTAGCACAGTGTGCTAAAAATAAAGGGTGGT
GTTCTGAAttgatgaacaaaaaaattctgTACATCGTACAAAGTTATGAA
ATTTTGGAATAAATGATGAAGATATATGTcgcttttttgggacacactgc
gGCATAGTATAAAGAGCTTACTGTAGAGCTTTTCTATTCTAAATTTGGGC
AGAGAGTTTATAAGATAAGTGAGAGGAACTCCAAGatcttttaaatttca
ttaaatgaCTAATTTGACAAAGAATTTGGTCCAAGGAGGGGTAGGGTCAC
TCAAGTAAAACGGGACTTTCTTATGTATACCTTCTGTAATGGCCTTTTGA
TTGATAGCAAGATAATAACATACTAAAAATGCGAATTTGATTATCTATTA
CAGTGTGCCATGCTGAGATGAATGCAATCATGAACAAAAATTCTGCTTCT
GTCAAGAATTGTACCATATATGTAGCTCTTTTTCCTTGCAATGAATGTGC
AAAGCTCATTGTCCAATCTGGAATCAAGGAAGTTGTTTATTACTCAGCAA
AAAATGGTGAATCTATGGAAGCTAAAGCATCCCGAAAAATGTTTGAATTG
GCTGGGATTAAGTACAGGTATGTGAAGTGTGTgatgcatagccctctttt
ggcgtcaatgcaatgtcttctttcaaaccttttcaagcaaagattttaac
aaccaactttgtgccctctttctgcctactctaacaattagaataggcag
ggcagaaagtcggccgtctaaactNTGTAGTGTTGCTTagcatctttttt
attttcagcgtCTTGGCGAAGGTAAACATTTAGGAATTTTATGTGCTGAG
GTTATTTTAATTTTGCAGATGCTATGAATACTGTACCATTTCTATTCTTA
AGACTTATTTTTGGTCAATTCTTTtggaattcaaaattgaaattatcatT
CAAAGGTTTTAATTTGAGCCTCAATTTTAGGACAATTACATATTATTATC
AattcttttgagaaaaattgagAAGTTTTAAACTCTAAATATCTTCTCCA
CAATTCACAGGCAGCATATtcctaaagaagaaaaattagtGATCGATTTT
TCTGtcatcaataaaaacaaatctcAACCAACTGGCATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005906XLOC_005906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010535-exon-sc0000107-1491911889:543337..543404TCONS_00010535-exon-sc0000107-1491911889:543337..543404Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1510915933:543337..543404TCONS_00010535-exon-sc0000107-1510915933:543337..543404Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1575043694:543337..543404TCONS_00010535-exon-sc0000107-1575043694:543337..543404Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1491911889:543796..543960TCONS_00010535-exon-sc0000107-1491911889:543796..543960Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1510915933:543796..543960TCONS_00010535-exon-sc0000107-1510915933:543796..543960Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1575043694:543796..543960TCONS_00010535-exon-sc0000107-1575043694:543796..543960Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1491911889:544490..544703TCONS_00010535-exon-sc0000107-1491911889:544490..544703Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1510915933:544490..544703TCONS_00010535-exon-sc0000107-1510915933:544490..544703Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1575043694:544490..544703TCONS_00010535-exon-sc0000107-1575043694:544490..544703Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1491911889:545147..545228TCONS_00010535-exon-sc0000107-1491911889:545147..545228Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1510915933:545147..545228TCONS_00010535-exon-sc0000107-1510915933:545147..545228Clytia hemisphaericaexon
TCONS_00010535-exon-sc0000107-1575043694:545147..545228TCONS_00010535-exon-sc0000107-1575043694:545147..545228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:543337..545228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.55443	7.81371	5.39127	4.56682	21.0402	12.8603	0	1.7468	2.10901	1.45602	0.342132	0.241339	0.565622	1.0771	1.43081	1.25936	3.30662	2.36171	0.23571	0.380016	3.82599	2.98943	4.67156	4.75579	0.528554	0.246174	0.544216	0.17437	2.27416	2.1015
Blast
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BLAST of TCONS_00010535 vs. Swiss-Prot (Human)
Match: DCTD (Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.280e-69
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 2 
Query:   65 NTQRSKDSSSQVGACIVNDEKRIVGVGYNGMPSGCDDEELPWSRVGETYLDTKYAYVCHAEMNAIMNKNSASVKNCTIYVALFPCNECAKLIVQSGIKEVVYYSAKNGESMEAKASRKMFELAGIKYRQHIPKEEKLVIDFSVINKNKSQ 514
            + QRSKD +SQVGACIVN E +IVG+GYNGMP+GC D+ LPW R  E  LDTKY YVCHAE+NAIMNKNS  VK C++YVALFPCNECAKLI+Q+GIKEV++ S K  +S EA A+R +F +AG+ +R+ IPK  K+VIDF  IN   SQ
Sbjct:   26 SAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVIDFDSINSRPSQ 175
The following BLAST results are available for this feature:
BLAST of TCONS_00010535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCTD1.280e-6964.67Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD ... [more]
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