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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010510 ID=TCONS_00010510|Name=TCONS_00010510|organism=Clytia hemisphaerica|type=transcript|length=629bp
AGGGCAATAATCGATTACACGCGTCAGTTGGATGGATCAAGACCAATCAC
TTTCGTTTCTCATATGAGCCCTTACGATGACAAAGCGGTCAAATACGTGG
ACGTGGTTTGTTTCAATCGCTACTACACGTGGTACAGTGATAGCGGCTAC
ATCGATCTCATTCCTTATCAGTTGGAACGCGAGTTGAAGTTATGGTATCA
AATTCATGGCAAACTTCTTCTCATGACTGAGTATGGAGCTGATGCGGTCG
CAGGCTTGTATCagatttacagtccaggcacacgagggcctctaaACCAA
TCTATCGTGTACAATTACAAAGATCTTGATTCGTAGCGCAATGGATATTC
CATCCATGCCTTGGTTAGTTCTTCCTTGAACGCTTCGATGCTAGTAGCGT
TAACATTCTCTTTTGGTAGCTGGCTCCATGCTGTCACACATCGATAATAA
AACGACTTGGTCTGGACACTTCTGAATCCATCGTCTGCAAAGTTTGGTAT
CAGTTCGTAATCGTGAATTCGAGATGGACGCACCCTGCGAATAAACTTTT
CAACTGTGGTGTCCTTATCGTAGAAGTGCAAGTGTTTGTAGATCTGAACC
ATGTCTCCGAAGTGTCTTCTGAATTCGAG Run BLAST on NCBI protein sequence of TCONS_00010510-protein >TCONS_00010510-protein ID=TCONS_00010510-protein|Name=TCONS_00010510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
RAIIDYTRQLDGSRPITFVSHMSPYDDKAVKYVDVVCFNRYYTWYSDSGY
IDLIPYQLERELKLWYQIHGKLLLMTEYGADAVAGLYQIYSPGTRGPLNQ
SIVYNYKDLDS Run BLAST on NCBI transcript from alignment at sc0000107:115991..118100+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010510 ID=TCONS_00010510|Name=TCONS_00010510|organism=Clytia hemisphaerica|type=transcript|length=2110bp|location=Sequence derived from alignment at sc0000107:115991..118100+ (Clytia hemisphaerica)
AGGGCAATAATCGATTACACGCGTCAGTTGGATGGATCAAGACCAATCAC
TTTCGTTTCTCATATGAGCCCTTACGATGACAAAGCGGTAAGCATCTTTA
GTTGGTTTCGTCGTTTaggtttttgaataaaataaagTTTGTGCTTTCtc
aaataacaaatttgctCAAACTATTTAGGATAAGGTCAGGACAAGCCCGA
GAAATTAACTCCAATTTAAAATgcattcgctttaagtgtgcactaatctt
tgttttgcttcCCCTTTTTCAACGAATGCTACTATTCTAACATATTACAT
AATATAcggttggaaagataattcagagcgCTATATTCTCTGAgataaat
tattcaaaattttaagaaattgaCTTGAACCCCTTGAAAGAATTTTGGTG
TTCTGAGGAAACTTCATTAAGGATTTTTGCCTCCCGTGATAACTCTCTGA
TTAATAGACTTTAATGGCCATTCACCATATTAAGTTGTAAGCCCTTTAAT
AGGTTGTTATTTTTGCTCAAAAGTTTGTTTGGGCCTTGGTTATTTTGCTA
AGTCTGGGActgtttgttattgtttatgAACCTGAATCATTTTTATTCCG
TAAAATCCAGTacaattttttaattcgatAGTACATTTATGATCAGCTTG
TCACGGAGTTCTTTCAATTCTGTTCAACCGATTAACCTAAAAGTAAAGAG
ATCTCCAATGACAGTTATTAAAAAGATGTATGTCGTAAAAAGGGTGGGTA
CAAGTTAAAGCTAAAATTAACTGCTGAGCGTGGCTTGCCAACTGAGAaga
ttgaattgaattttgcAGGGATCAAAGTGCAGTTTTAGGGCATGTTTCAT
CGGAGTTCAAAGGGACACTAGGAcagattttttatataagaCAGTAGAAA
GTGATACATTGTCTTCCTCAAGTCACggaaaattaatcaaaataatGTGC
TGCCCATGCTAAGTAGACCATAGTAGACCACAGCCAAATAAACAAACAAC
TGTCACGGTGGGAAACGAGGAGTCGAGAGAATGGGCGTGATTGATCAAAT
TGCAAGCACCGAGCTTATCCCGTATTTTTGATAAGATATttgttgaattt
aaaaaaacttcatatATAAaagcaatataatatttttcaaacgcAGGTCA
AATACGTGGACGTGGTTTGTTTCAATCGCTACTACACGTGGTACAGTGAT
AGCGGCTACATCGATCTCATTCCTTATCAGTTGGAACGCGAGTTGAAGTT
ATGGTATCAAATTCATGGCAAACTTCTTCTCATGACTGAGTATGGAGCTG
ATGCGGTCGCAGGCTTGTATCaggtaaattttttgaaaaagctgCTATAA
GAATTGAAGACACATCAAAAGTGTGGCCAAAATGACTTACTTAACTTATC
AGCTAAGGAATTTGTTCCCCTTTGCTCTTCCATTATTCCTTCCTCACCGT
AGGCAGTGGGAGTCCAGTATCTTTCCTTGTGATTCTAGTGATCTAGCCAA
AATGTCAGGTTTTAGTTTTGAAGGGGAAGACCCgatgttatttttttatg
atgatAACCCAGCTGGCATAATAAGTTCTTttgacgttcatctaacgttt
tacAAACTCCAAATAGACGTTACTATGACGTTTTGCGCCGGCTGGGAATT
TTCCGTGGAAAGTCcaacttatttttttttatgaagatttacattccagg
cacacgagggcctctaaaccgatctATCGTCTACAATTNATGAAgattta
cagtccaggcacacgagggcctctaaACCAATCTATCGTGTACAATTACA
AAGATCTTGATTCGTAGCGCAATGGATATTCCATCCATGCCTTGGTTAGT
TCTTCCTTGAACGCTTCGATGCTAGTAGCGTTAACATTCTCTTTTGGTAG
CTGGCTCCATGCTGTCACACATCGATAATAAAACGACTTGGTCTGGACAC
TTCTGAATCCATCGTCTGCAAAGTTTGGTATCAGTTCGTAATCGTGAATT
CGAGATGGACGCACCCTGCGAATAAACTTTTCAACTGTGGTGTCCTTATC
GTAGAAGTGCAAGTGTTTGTAGATCTGAACCATGTCTCCGAAGTGTCTTC
TGAATTCGAG Coding sequence (CDS) from alignment at sc0000107:115991..118100+ >TCONS_00010510 ID=TCONS_00010510|Name=TCONS_00010510|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000107:115991..118100+ (Clytia hemisphaerica)
AGGGCAATAATCGATTACACGCGTCAGTTGGATGGATCAAGACCAATCAC
TTTCGTTTCTCATATGAGCCCTTACGATGACAAAGCGGTCAAATACGTGG
ACGTGGTTTGTTTCAATCGCTACTACACGTGGTACAGTGATAGCGGCTAC
ATCGATCTCATTCCTTATCAGTTGGAACGCGAGTTGAAGTTATGGTATCA
AATTCATGGCAAACTTCTTCTCATGACTGAGTATGGAGCTGATGCGGTCG
CAGGCTTGTATCagatttacagtccaggcacacgagggcctctaaACCAA
TCTATCGTGTACAATTACAAAGATCTTGATTCGTAGAGGGCAATAATCGA
TTACACGCGTCAGTTGGATGGATCAAGACCAATCACTTTCGTTTCTCATA
TGAGCCCTTACGATGACAAAGCGGTCAAATACGTGGACGTGGTTTGTTTC
AATCGCTACTACACGTGGTACAGTGATAGCGGCTACATCGATCTCATTCC
TTATCAGTTGGAACGCGAGTTGAAGTTATGGTATCAAATTCATGGCAAAC
TTCTTCTCATGACTGAGTATGGAGCTGATGCGGTCGCAGGCTTGTATCag
atttacagtccaggcacacgagggcctctaaACCAATCTATCGTGTACAA
TTACAAAGATCTTGATTCGTAGAGGGCAATAATCGATTACACGCGTCAGT
TGGATGGATCAAGACCAATCACTTTCGTTTCTCATATGAGCCCTTACGAT
GACAAAGCGGTCAAATACGTGGACGTGGTTTGTTTCAATCGCTACTACAC
GTGGTACAGTGATAGCGGCTACATCGATCTCATTCCTTATCAGTTGGAAC
GCGAGTTGAAGTTATGGTATCAAATTCATGGCAAACTTCTTCTCATGACT
GAGTATGGAGCTGATGCGGTCGCAGGCTTGTATCagatttacagtccagg
cacacgagggcctctaaACCAATCTATCGTGTACAATTACAAAGATCTTG
ATTCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010510-exon-sc0000107-1491911889:115991..116077 | TCONS_00010510-exon-sc0000107-1491911889:115991..116077 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1510915933:115991..116077 | TCONS_00010510-exon-sc0000107-1510915933:115991..116077 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1575043694:115991..116077 | TCONS_00010510-exon-sc0000107-1575043694:115991..116077 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1491911889:117137..117313 | TCONS_00010510-exon-sc0000107-1491911889:117137..117313 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1510915933:117137..117313 | TCONS_00010510-exon-sc0000107-1510915933:117137..117313 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1575043694:117137..117313 | TCONS_00010510-exon-sc0000107-1575043694:117137..117313 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1491911889:117736..118100 | TCONS_00010510-exon-sc0000107-1491911889:117736..118100 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1510915933:117736..118100 | TCONS_00010510-exon-sc0000107-1510915933:117736..118100 | Clytia hemisphaerica | exon |
| TCONS_00010510-exon-sc0000107-1575043694:117736..118100 | TCONS_00010510-exon-sc0000107-1575043694:117736..118100 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:115991..118100 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006103 | Glyco_hydro_2_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
The following BLAST results are available for this feature:
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