TCONS_00010508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010508
Unique NameTCONS_00010508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010508 ID=TCONS_00010508|Name=TCONS_00010508|organism=Clytia hemisphaerica|type=transcript|length=529bp
NNAGGTACATCTGGGAACGACCTGTACAAAGGAGGTATCGATGTCCCTAA
TGTTAACCTATGGTGGCCGGTTGGAATGGGCCATAAACCAGCATATCTTT
ACACGTTAAAGGTCACAGTGAAAGGTAGTGGAGATGTACAAGATGATGTT
TACAGAATCAAATTTGGGTTCCGCACAATCAAAGTGACTGACAAAGCATT
TCTTATCAACGGAATgcctttttatttcaaaggatTTGGAATGCATGAGG
ATGCTGATGTAAGGGATGATATATTTGCTCTTCATTACTAAAATACTACA
ATACTAAAATTTGCTCTCCATACAAAATCCTTCCGAAGTTTTGGACTGAG
AATGGTGTTGTAACctatttggaaagaaaaacttttcctgAAGTTTGATT
TTGCTTTCAACTATGTAGCTTTTCACTTCTTTGTCAATGCTGTCTAACTT
TCAAATTCATCCATTTGCTTTCattcttattattattattacaccGGTag
gtaaagaaaaataaatcaagATAAAGTAT
Run BLAST on NCBI

transcript from alignment at sc0000107:108091..108961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010508 ID=TCONS_00010508|Name=TCONS_00010508|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at sc0000107:108091..108961+ (Clytia hemisphaerica)
NNAGGTACATCTGGGAACGACCTGTACAAAGGAGGTATCGATGTCCCTAA
TGTTAACCTATGGTGGCCGGTTGGAATGGGCCATAAACCAGCATATCTTT
ACACGTTAAAGGTAAACCGCGTACATTAAAAGTTACAATACCTTAAAAAA
TATTACCTATAGGCCTTTAAGACTATGTTTGAGCGAAGTGGTAGAAGTCA
AGTTAGCATTCAATTTTATACTGATGTACTATTATTAATATGTTCAAGCA
CTCGGTCATTGTGAAAAATGTTAAAGAAGCCAGAATAATTATTTTCcttg
tcttttgaaaatttattgatatTCAGAGTTTCAATTTAAGAGAaacaaat
cattaaaaaaatcttgatatttttatttcttgtaacaatcttCTAATGCA
GCATCCATACAAGGAGATTCTCAAAACTGATTTTCCTTATTTTACCTTTT
CAGGTCACAGTGAAAGGTAGTGGAGATGTACAAGATGATGTTTACAGAAT
CAAATTTGGGTTCCGCACAATCAAAGTGACTGACAAAGCATTTCTTATCA
ACGGAATgcctttttatttcaaaggatTTGGAATGCATGAGGATGCTGAT
GTAAGGGATGATATATTTGCTCTTCATTACTAAAATACTACAATACTAAA
ATTTGCTCTCCATACAAAATCCTTCCGAAGTTTTGGACTGAGAATGGTGT
TGTAACctatttggaaagaaaaacttttcctgAAGTTTGATTTTGCTTTC
AACTATGTAGCTTTTCACTTCTTTGTCAATGCTGTCTAACTTTCAAATTC
ATCCATTTGCTTTCattcttattattattattacaccGGTaggtaaagaa
aaataaatcaagATAAAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005896XLOC_005896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010508-exon-sc0000107-1491911889:108091..108201TCONS_00010508-exon-sc0000107-1491911889:108091..108201Clytia hemisphaericaexon
TCONS_00010508-exon-sc0000107-1510915933:108091..108201TCONS_00010508-exon-sc0000107-1510915933:108091..108201Clytia hemisphaericaexon
TCONS_00010508-exon-sc0000107-1575043694:108091..108201TCONS_00010508-exon-sc0000107-1575043694:108091..108201Clytia hemisphaericaexon
TCONS_00010508-exon-sc0000107-1491911889:108544..108961TCONS_00010508-exon-sc0000107-1491911889:108544..108961Clytia hemisphaericaexon
TCONS_00010508-exon-sc0000107-1510915933:108544..108961TCONS_00010508-exon-sc0000107-1510915933:108544..108961Clytia hemisphaericaexon
TCONS_00010508-exon-sc0000107-1575043694:108544..108961TCONS_00010508-exon-sc0000107-1575043694:108544..108961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:108091..108961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.997812	1.08114	1.12977	1.47374	6.87753	5.67101	4.27615	7.33934	8.22151	7.29058	10.6708	8.86049	6.5624	4.21159	7.61749	13.7822	6.65825	8.70123	3.29994	3.94646	7.18196	6.58793	8.13562	7.51203	2.73778	3.29329	3.95257	3.73156	14.3974	7.5224
Blast
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BLAST of TCONS_00010508 vs. Swiss-Prot (Human)
Match: BGLR (Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.615e-19
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   28 KGGIDVPNVNLWWPVGMGHKPAYLYTLKV--TVKGSGDVQDDVYRIKFGFRTIKVTDKAFLINGMPFYFKGFGMHEDADVRDDIF 276
            +G + VP V+LWWP  M  +PAYLY+L+V  T + S     D Y +  G RT+ VT   FLING PFYF G   HEDAD+R   F
Sbjct:  277 QGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKGF 361
The following BLAST results are available for this feature:
BLAST of TCONS_00010508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGLR1.615e-1949.41Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV... [more]
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