TCONS_00010507 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010507
Unique NameTCONS_00010507
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010507 ID=TCONS_00010507|Name=TCONS_00010507|organism=Clytia hemisphaerica|type=transcript|length=610bp
TAATAGTTCAATGTAAAATATGAAAACAACTGATATATGATGTTTAGAAT
AATTCTGGTTGCTCTCCATGTCCTGTATTTTGGAGTAAAAGAATCCTTGT
CACTATTTCCTCAAGAATCAGAGTCCAGAGAGTTGAAGATTTTGGATGGG
TTATGGAATTTTAGAGCTGACAATTCTTCGTCAAGAAATGTTGGTATTAA
GAATAAGTGGTATTCAGACCAGTTGAAAAAGaGTGGCTCTGTTATAACCA
TGCCTGTTCCATCAAGTTATAATGATATCACTCAAGATGCCCACATTCGT
GATTTTGTTGGCTGGGTGTGGTACGATAGAGATTTCTATGCACCAAACTC
CTGGAACGATGAATCTGGGCATAGAAGAGTTGTCCTACGATTTGAAAGCT
GTCATTATTTTTGCATGGTGtGGCTCAATGGAAAGCAAATCATGGAACAT
GATGGTGGCCATTTACCATTTGAAGCTGATGTAACAGAACATTTATCTTT
TGGCAAATCTAACTTGGTCACTGTTGCAGCAAACAATACTTTAACACCAA
AGACACTGCCACCTGGTGATGCCACATTTTTGGAAGGAGGGTAAAAGATT
CAGTTTTTTG
Run BLAST on NCBI

protein sequence of TCONS_00010507-protein

>TCONS_00010507-protein ID=TCONS_00010507-protein|Name=TCONS_00010507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MMFRIILVALHVLYFGVKESLSLFPQESESRELKILDGLWNFRADNSSSR
NVGIKNKWYSDQLKKSGSVITMPVPSSYNDITQDAHIRDFVGWVWYDRDF
YAPNSWNDESGHRRVVLRFESCHYFCMVWLNGKQIMEHDGGHLPFEADVT
EHLSFGKSNLVTVAANNTLTPKTLPPGDATFLEGG
Run BLAST on NCBI

transcript from alignment at sc0000107:104091..105994+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010507 ID=TCONS_00010507|Name=TCONS_00010507|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at sc0000107:104091..105994+ (Clytia hemisphaerica)
TAATAGTTCAATGTAAAATATGAAAACAACTGATATATGATGTTTAGAAT
AATTCTGGTTGCTCTCCATGTCCTGTATTTTGGAGTAAAAGAATCCTTGT
CACTATTTCCTCAAGAATCAGAGTCCAGAGAGTTGAAGATTTTGGATGGG
TTATGGAATTTTAGAGCTGACAATTCTTCGTCAAGAAATGTTGGTATTAA
GAATAAGTGGTATTCAGACCAGTTGAAAAAGgtataaatttttcttttat
ccatTACAATCATACACAATGTTATTGCATATACAGTTAACGATCTGTAA
CTGAATTTTCAAGGGGGATTAGATTTTCATAAGATAAGGGAGCATATTGC
ATATTGAATGGTAGAGCGTTGTTAATGAGGGTTTCTTTTTGCGGGTGGTT
TTTTAATATTATCAAATGATAGAGTGTAATTAGAGATTATCAAGAAATTt
gattgtaatttttaaacttGCCTATCTGAAACTGTTGGTCAGTGATGGCA
GTTCTGGTTTTGGGTTGATGCAACTCCAAATTGTTGATTCAAGAAAGAGT
CCTTTTGATTacagaaaattataaaaaacgatttcaaaaaaaattatcaa
aaacttAAGCTAGCATGAAAACTCTCCTCGAAAAGGGCTACTATTTTTAA
GAGGCGCTTGATAGGGTGGATAGGGCGGGTTGAAATGTGGGTTTGAGCTT
TTTTTAGAGGGGATCCAATGAAGATAAATCCAGTGTTAATCCAGACCTAC
actaattttaaactttttgcgtATTCGAACAGTTGTATATTTGTAAACTA
GGtttgtaatttattttaaaaatagggggtGATGCAATATAAATGGGGTT
GAGATCTCTCTGTACATTATGGACACAACcaataactttttgtttttcta
gaGTGGCTCTGTTATAACCATGCCTGTTCCATCAAGTTATAATGATATCA
CTCAAGATGCCCACATTCGTGATTTTGTTGGCTGGGTGTGGTACGATAGA
GATTTCTATGCACCAAACTCCTGGAACGATGAATCTGGGCATAGAAGAGT
TGTCCTACGATTTGAAAGCTGTCATTATTTTTGCATGGTGGTGAGTTTAC
cttattattttatatttattttgtaTACCTTTGAAAGCATTTACCTCCCT
ATTTGCCCCAATCNATTATATTTTGTATACCTTTGAAAGTATTTACCTCC
CTATTTGCCCCAATCGAATTTTACTGTATTTGTTTTTCGACTTTATGTAG
TATTTTGTAAcattgcaataaaaattttaagcaaaaagaaaagtggatac
atgatttttttataaacataacgcttataagcatatgaaggctcagatct
gcagaatttttaagcataacataagcataaaTGTAGGCCTGAAATATTCA
AGTTGTCATTTGATTGATAAGGTTTgatagaggtcaagtaaaaaaaagac
attccacgtcTAGCTACATTTCAccgctcccaaaatctgaacaaattttt
acaaaatttctgaaatttcactaaaaacttggctcagGGTGATAATCaca
agcatgattcataagcatataataagcataataATGTCTGGATTCACAAG
CTTGGAccaaggggcagacacttgcttataaaaaaacatgtagtgctttc
tttgatttgatttcTTTGAGATTCTGCTATCTGTGACAACTgtgtgaaaa
atatttatttaaagtGGCTCAATGGAAAGCAAATCATGGAACATGATGGT
GGCCATTTACCATTTGAAGCTGATGTAACAGAACATTTATCTTTTGGCAA
ATCTAACTTGGTCACTGTTGCAGCAAACAATACTTTAACACCAAAGACAC
TGCCACCTGGTGATGCCACATTTTTGGAAGGAGGGTAAAAGATTCAGTTT
TTTG

Coding sequence (CDS) from alignment at sc0000107:104091..105994+

>TCONS_00010507 ID=TCONS_00010507|Name=TCONS_00010507|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000107:104091..105994+ (Clytia hemisphaerica)
ATGATGTTTAGAATAATTCTGGTTGCTCTCCATGTCCTGTATTTTGGAGT
AAAAGAATCCTTGTCACTATTTCCTCAAGAATCAGAGTCCAGAGAGTTGA
AGATTTTGGATGGGTTATGGAATTTTAGAGCTGACAATTCTTCGTCAAGA
AATGTTGGTATTAAGAATAAGTGGTATTCAGACCAGTTGAAAAAGaGTGG
CTCTGTTATAACCATGCCTGTTCCATCAAGTTATAATGATATCACTCAAG
ATGCCCACATTCGTGATTTTGTTGGCTGGGTGTGGTACGATAGAGATTTC
TATGCACCAAACTCCTGGAACGATGAATCTGGGCATAGAAGAGTTGTCCT
ACGATTTGAAAGCTGTCATTATTTTTGCATGGTGtGGCTCAATGGAAAGC
AAATCATGGAACATGATGGTGGCCATTTACCATTTGAAGCTGATGTAACA
GAACATTTATCTTTTGGCAAATCTAACTTGGTCACTGTTGCAGCAAACAA
TACTTTAACACCAAAGACACTGCCACCTGGTGATGCCACATTTTTGGAAG
GAGGGTAAATGATGTTTAGAATAATTCTGGTTGCTCTCCATGTCCTGTAT
TTTGGAGTAAAAGAATCCTTGTCACTATTTCCTCAAGAATCAGAGTCCAG
AGAGTTGAAGATTTTGGATGGGTTATGGAATTTTAGAGCTGACAATTCTT
CGTCAAGAAATGTTGGTATTAAGAATAAGTGGTATTCAGACCAGTTGAAA
AAGaGTGGCTCTGTTATAACCATGCCTGTTCCATCAAGTTATAATGATAT
CACTCAAGATGCCCACATTCGTGATTTTGTTGGCTGGGTGTGGTACGATA
GAGATTTCTATGCACCAAACTCCTGGAACGATGAATCTGGGCATAGAAGA
GTTGTCCTACGATTTGAAAGCTGTCATTATTTTTGCATGGTGtGGCTCAA
TGGAAAGCAAATCATGGAACATGATGGTGGCCATTTACCATTTGAAGCTG
ATGTAACAGAACATTTATCTTTTGGCAAATCTAACTTGGTCACTGTTGCA
GCAAACAATACTTTAACACCAAAGACACTGCCACCTGGTGATGCCACATT
TTTGGAAGGAGGGTAAATGATGTTTAGAATAATTCTGGTTGCTCTCCATG
TCCTGTATTTTGGAGTAAAAGAATCCTTGTCACTATTTCCTCAAGAATCA
GAGTCCAGAGAGTTGAAGATTTTGGATGGGTTATGGAATTTTAGAGCTGA
CAATTCTTCGTCAAGAAATGTTGGTATTAAGAATAAGTGGTATTCAGACC
AGTTGAAAAAGaGTGGCTCTGTTATAACCATGCCTGTTCCATCAAGTTAT
AATGATATCACTCAAGATGCCCACATTCGTGATTTTGTTGGCTGGGTGTG
GTACGATAGAGATTTCTATGCACCAAACTCCTGGAACGATGAATCTGGGC
ATAGAAGAGTTGTCCTACGATTTGAAAGCTGTCATTATTTTTGCATGGTG
tGGCTCAATGGAAAGCAAATCATGGAACATGATGGTGGCCATTTACCATT
TGAAGCTGATGTAACAGAACATTTATCTTTTGGCAAATCTAACTTGGTCA
CTGTTGCAGCAAACAATACTTTAACACCAAAGACACTGCCACCTGGTGAT
GCCACATTTTTGGAAGGAGGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005895XLOC_005895Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010507-proteinTCONS_00010507-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010507-exon-sc0000107-1491911889:104091..104321TCONS_00010507-exon-sc0000107-1491911889:104091..104321Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1510915933:104091..104321TCONS_00010507-exon-sc0000107-1510915933:104091..104321Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1575043694:104091..104321TCONS_00010507-exon-sc0000107-1575043694:104091..104321Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1491911889:104992..105180TCONS_00010507-exon-sc0000107-1491911889:104992..105180Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1510915933:104992..105180TCONS_00010507-exon-sc0000107-1510915933:104992..105180Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1575043694:104992..105180TCONS_00010507-exon-sc0000107-1575043694:104992..105180Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1491911889:105805..105994TCONS_00010507-exon-sc0000107-1491911889:105805..105994Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1510915933:105805..105994TCONS_00010507-exon-sc0000107-1510915933:105805..105994Clytia hemisphaericaexon
TCONS_00010507-exon-sc0000107-1575043694:105805..105994TCONS_00010507-exon-sc0000107-1575043694:105805..105994Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000107supercontigsc0000107:104091..105994 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56572	2.24316	2.70469	1.27406	22.4305	18.762	19.9056	18.2094	17.1476	20.7783	21.0643	12.9041	11.7093	7.76055	13.8154	19.84	16.1392	15.9295	9.12275	9.84154	14.8841	17.6492	12.5788	16.785	8.54908	11.6991	4.85257	6.08508	22.782	20.1098
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006104Glyco_hydro_2_N
IPR008979Galactose-bd-like
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
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BLAST of TCONS_00010507 vs. Swiss-Prot (Human)
Match: BGLR (Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 7.761e-51
Identity = 91/180 (50.56%), Postives = 117/180 (65.00%), Query Frame = 1 
Query:   61 ALHVLYFGVKESLS---LFPQESESRELKILDGLWNFRADNSSSRNVGIKNKWYSDQLKKSGSVITMPVPSSYNDITQDAHIRDFVGWVWYDRDFYAPNSWNDESGHRRVVLRFESCHYFCMVWLNGKQIMEHDGGHLPFEADVTEHLSFG--KSNL-VTVAANNTLTPKTLPPGDATFL 582
            AL  L +G    L    L+PQES SRE K LDGLW+FRAD S +R  G + +WY   L +SG  + MPVPSS+NDI+QD  +R FVGWVWY+R+   P  W  +    RVVLR  S H + +VW+NG   +EH+GG+LPFEAD++  +  G   S L +T+A NNTLTP TLPPG   +L
Sbjct:   11 ALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFEEQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDL-RTRVVLRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTTLPPGTIQYL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00010507 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BGLR7.761e-5150.56Beta-glucuronidase OS=Homo sapiens GN=GUSB PE=1 SV... [more]
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